HHsearch alignment for GI: 254781215 and conserved domain: PRK13342
>PRK13342 recombination factor protein RarA; Reviewed.
Probab=90.27 E-value=1.2 Score=22.63 Aligned_cols=120 Identities=12% Similarity=0.078 Sum_probs=65.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 46502576597899999999999808996699980858999999999999999855000134443222222333444321
Q gi|254781215|r 80 GAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLH 159 (511)
Q Consensus 80 ~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~~Q~~~ilw~Ei~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (511)
T Consensus 40 ~Il~GPPG~GKTTlA~iiA~~~-----~~~f~~lnA~~~gv-----~dir~ii~~a~~~--------------------- 88 (417)
T PRK13342 40 MILWGPPGTGKTTLARIIAGAT-----DAEFEALSAVTSGV-----KDLREVIEEAKQS--------------------- 88 (417)
T ss_pred EEEECCCCCCHHHHHHHHHHHH-----CCCEEEEECCCCCH-----HHHHHHHHHHHHH---------------------
T ss_conf 9988969998999999999986-----89889961410388-----9999999998863---------------------
Q ss_pred CCCCCCCCEEEEEECCCCCCCCCHHHHCCCCCCEEEEECCHHCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHH
Q ss_conf 11235786169853035755610021202676149997111029978898888885079981389982389987655676
Q gi|254781215|r 160 CSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYE 239 (511)
Q Consensus 160 ~~~~~~~~~~~~~~~~~s~~~~ea~~G~h~~~~~lvI~DEAsgI~d~i~e~i~~~Lt~~g~~~~~i~~~nP~~~~g~fy~ 239 (511)
T Consensus 89 ------------------------~---~~~~-tilfiDEIHRfnK~QQD~LLp~vE~-g-~i--iLIgATTEN--P~f~ 134 (417)
T PRK13342 89 ------------------------R---LGRR-TILFIDEIHRFNKAQQDALLPHVED-G-TI--TLIGATTEN--PSFE 134 (417)
T ss_pred ------------------------H---CCCC-EEEEEECHHHCCHHHHHHHHHHHHC-C-CE--EEEEECCCC--CHHH
T ss_conf ------------------------1---4896-5999978200588999999875112-6-56--999741579--2253
Q ss_pred HHHCCCCCCEEEEECCCCCCCCCHHHHHHH
Q ss_conf 530352474179840433677897789999
Q gi|254781215|r 240 IFNKPLDDWKRFQIDTRTVEGIDPSFHEGI 269 (511)
Q Consensus 240 ~~~~~~~~w~~~~i~~~~~p~~~~~~ie~~ 269 (511)
T Consensus 135 in~aLlSRc~vf~l~-----~L~~~di~~i 159 (417)
T PRK13342 135 VNPALLSRAQVFELK-----PLSEEDLEQL 159 (417)
T ss_pred CCHHHHHHHHHEECC-----CCCHHHHHHH
T ss_conf 489898565700205-----8999999999