HHsearch alignment for GI: 254781215 and conserved domain: PRK13889
>PRK13889 conjugal transfer relaxase TraA; Provisional.
Probab=96.30 E-value=0.048 Score=31.51 Aligned_cols=132 Identities=14% Similarity=0.045 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCEEEEEECC-CCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHH
Q ss_conf 99999999999874056555421012465025-76597899999999999808996699980858999999999999999
Q gi|254781215|r 54 WQLEFMEVVDAHCLNSVNNPNPEVFKGAISAG-RGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWL 132 (511)
Q Consensus 54 WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sg-rG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~~Q~~~ilw~Ei~k~~ 132 (511)
T Consensus 350 EQ~~A~~hiT~------------~~~iavVvG~AGtGKStmL~aAReawEa--~GyrV~GaALsGkAAegL-e~~----- 409 (992)
T PRK13889 350 EQADALAHVTD------------GRDLGVVVGYAGTGKSAMLGVAREAWEA--AGYEVRGAALSGIAAENL-EGG----- 409 (992)
T ss_pred HHHHHHHHHCC------------CCCEEEEEECCCCCHHHHHHHHHHHHHH--CCCEEEEECCCHHHHHHH-HHC-----
T ss_conf 99999998647------------8975899833888788999999999997--798898115006899976-534-----
Q ss_pred HHCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHCCCCCCEEEEECCHHCCCHHHHHHHH
Q ss_conf 85500013444322222233344432111235786169853035755610021202676149997111029978898888
Q gi|254781215|r 133 SLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGIL 212 (511)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ea~~G~h~~~~~lvI~DEAsgI~d~i~e~i~ 212 (511)
T Consensus 410 ------sGI~SrTlAs~e~~w~~---------------------------g~~~L~~~--dVlVVDEAGMVgSRqMarll 454 (992)
T PRK13889 410 ------SGIASRTIASLEHGWGQ---------------------------GRDLLTAR--DVLVIDEAGMVGTRQLERVL 454 (992)
T ss_pred ------CCCCCHHHHHHHHHHHC---------------------------CCCCCCCC--CEEEEECCCCCCHHHHHHHH
T ss_conf ------79431679999998746---------------------------73347898--58999676557749999999
Q ss_pred HHHCCCCCCEEEEEECC-----CCCCCCHHHHHHH
Q ss_conf 88507998138998238-----9987655676530
Q gi|254781215|r 213 GFLTERNANRFWIMTSN-----PRRLSGKFYEIFN 242 (511)
Q Consensus 213 ~~Lt~~g~~~~~i~~~n-----P~~~~g~fy~~~~ 242 (511)
T Consensus 455 ~~Ae~AGAKV--VLVGD~~QLq~IeAGaaFral~e 487 (992)
T PRK13889 455 SHAADAGAKV--VLVGDPQQLQAIEAGAAFRSIHE 487 (992)
T ss_pred HHHHHCCCEE--EEECCHHHCCCCCCCHHHHHHHH
T ss_conf 9999849989--99488777188646889999998