HHsearch alignment for GI: 254781215 and conserved domain: TIGR01447
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit; InterPro: IPR006344 This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. C-terminal part of the protein matches a domain found in viral RNA helicase, superfamily 1, IPR000606 from INTERPRO. ; GO: 0008854 exodeoxyribonuclease V activity, 0009338 exodeoxyribonuclease V complex.
Probab=98.10 E-value=3.8e-05 Score=51.05 Aligned_cols=154 Identities=17% Similarity=0.144 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCC-----CEEEEEECCHHHHHHHHHH
Q ss_conf 58999999999998740565554210124650257659789999999999980899-----6699980858999999999
Q gi|254781215|r 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPG-----ISVICLANSETQLKTTLWA 126 (511)
Q Consensus 52 ~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~-----~kv~vtApt~~Q~~~ilw~ 126 (511)
T Consensus 229 ~D~Q~~a~~~aL~~~f------------~li~GGPGTGKTTTv~~LL~al~~~~~~~G~~~~~I~l~APTGKAa~RL-~e 295 (753)
T TIGR01447 229 TDWQKVAVALALKSNF------------SLITGGPGTGKTTTVARLLLALIKQSPKQGKPRLRIALAAPTGKAAARL-AE 295 (753)
T ss_pred HHHHHHHHHHHHHCCE------------EEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHH-HH
T ss_conf 3799999999860876------------8998798897789999999999998986499740478866844799999-99
Q ss_pred HHHHHHHHCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHCCCCCCEEEEECCHHCCCHH
Q ss_conf 99999985500013444322222233344432111235786169853035755610021202676149997111029978
Q gi|254781215|r 127 EVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDV 206 (511)
Q Consensus 127 Ei~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ea~~G~h~~~~~lvI~DEAsgI~d~ 206 (511)
T Consensus 296 sl~~~~~~L~~~~~-aid~~~~~~~~~~~~----TiHrLLG~~~I~~~~fr~h~-~N-----~L~~DVLvvDEaSMVdl~ 364 (753)
T TIGR01447 296 SLRKAVKKLAAENM-AIDEDLIAALPSEAT----TIHRLLGIKPIDTKRFRHHE-RN-----PLPLDVLVVDEASMVDLP 364 (753)
T ss_pred HHHHHHHHHHHHCC-CCCHHHHCCCCHHHH----HHHHHHCCCCCCCCCCCCCC-CC-----CCCCCEEEECCCHHCCHH
T ss_conf 99988632234236-658798548720456----88886166147876776777-78-----898552787060022679
Q ss_pred HHHHHHHHHCCCCCC------EEEEEECCC
Q ss_conf 898888885079981------389982389
Q gi|254781215|r 207 INLGILGFLTERNAN------RFWIMTSNP 230 (511)
Q Consensus 207 i~e~i~~~Lt~~g~~------~~~i~~~nP 230 (511)
T Consensus 365 lm~kL~~A~~~-~~k~~KLy~~~LIllGD~ 393 (753)
T TIGR01447 365 LMAKLLKALPP-NTKDKKLYADRLILLGDK 393 (753)
T ss_pred HHHHHHHHCCC-CCCCCCHHHCCCCEECCC
T ss_conf 99999972263-001320101020012267