HHsearch alignment for GI: 254781215 and conserved domain: TIGR03015
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=94.79 E-value=0.28 Score=26.61 Aligned_cols=146 Identities=18% Similarity=0.117 Sum_probs=73.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHH
Q ss_conf 75655578458999999999998740565554210124650257659789999999999980899669998085899999
Q gi|254781215|r 43 TPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKT 122 (511)
Q Consensus 43 ~~~~~~~~P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~~Q~~~ 122 (511)
T Consensus 16 ~pd~~~~y~s~~h~~al~~L~~~l~~~~g-------~~lltGe~GtGKTtllr~l~~~l--~~~~~~~~~i~~~~l~~~~ 86 (269)
T TIGR03015 16 LPDPDFFYPSKGHKRAMAYLEYGLSQREG-------FILITGEVGAGKTTLIRNLLKRL--DQERVVAAKLVNTRVDAED 86 (269)
T ss_pred CCCHHHCCCCHHHHHHHHHHHHHHHCCCC-------EEEEECCCCCCHHHHHHHHHHHC--CCCCEEEEEECCCCCCHHH
T ss_conf 99845414786699999999999964896-------59997299898899999999845--9345489997699999999
Q ss_pred HHHHHHHHHHHHCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHH--HCCCCCCEEEEECCH
Q ss_conf 999999999985500013444322222233344432111235786169853035755610021--202676149997111
Q gi|254781215|r 123 TLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFV--GHHNTYGMAIINDEA 200 (511)
Q Consensus 123 ilw~Ei~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ea~~--G~h~~~~~lvI~DEA 200 (511)
T Consensus 87 ll-~~i~~~lg~~~~~----~~~~~~~------------------------~~l----~~~L~~~~~~g~-~~vliIDEA 132 (269)
T TIGR03015 87 LL-RMVAADFGLETEG----RDKAALL------------------------REL----EDFLIEQFAAGK-RALLVVDEA 132 (269)
T ss_pred HH-HHHHHHCCCCCCC----CCHHHHH------------------------HHH----HHHHHHHHHCCC-CEEEEEECH
T ss_conf 99-9999985989889----8999999------------------------999----999999996699-469997242
Q ss_pred HCCCHHHHHHHHHHH---CCCCCCEEEEEECCCC
Q ss_conf 029978898888885---0799813899823899
Q gi|254781215|r 201 SGTPDVINLGILGFL---TERNANRFWIMTSNPR 231 (511)
Q Consensus 201 sgI~d~i~e~i~~~L---t~~g~~~~~i~~~nP~ 231 (511)
T Consensus 133 q~L~~~~Le~Lr~L~n~e~~~~~ll~iiL~Gqpe 166 (269)
T TIGR03015 133 QNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE 166 (269)
T ss_pred HHCCHHHHHHHHHHHCCCCCCCCCEEEEEECCHH
T ss_conf 2199999999999970135888704899957867