HHsearch alignment for GI: 254781215 and conserved domain: cd00268
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=97.44 E-value=0.0024 Score=39.69 Aligned_cols=72 Identities=19% Similarity=0.122 Sum_probs=52.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHC---CCCEEEEEECCHHHHHHH
Q ss_conf 55784589999999999987405655542101246502576597899999999999808---996699980858999999
Q gi|254781215|r 47 GFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTR---PGISVICLANSETQLKTT 123 (511)
Q Consensus 47 ~~~~P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~---p~~kv~vtApt~~Q~~~i 123 (511)
T Consensus 18 g~~~pt~IQ~~~ip~il~----g~--------dvi~~a~TGSGKTlay~lpil~~l~~~~~~~~~~alil~PTrELa~Qi 85 (203)
T cd00268 18 GFEKPTPIQARAIPPLLS----GR--------DVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQI 85 (203)
T ss_pred CCCCCCHHHHHHHHHHHC----CC--------CEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHH
T ss_conf 999999999999999977----99--------889975799722288886999998616676896699996879999999
Q ss_pred HHHHHHHH
Q ss_conf 99999999
Q gi|254781215|r 124 LWAEVSKW 131 (511)
Q Consensus 124 lw~Ei~k~ 131 (511)
T Consensus 86 -~~~~~~l 92 (203)
T cd00268 86 -AEVARKL 92 (203)
T ss_pred -HHHHHHH
T ss_conf -9999985