HHsearch alignment for GI: 254781215 and conserved domain: cd01128

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.

Probab=91.02  E-value=0.58  Score=24.65  Aligned_cols=36  Identities=31%  Similarity=0.350  Sum_probs=27.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf             246502576597899999999999808996699980
Q gi|254781215|r   79 KGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLA  114 (511)
Q Consensus        79 r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtA  114 (511)
T Consensus        18 R~gI~g~~gvGKT~Ll~~i~~~~~~~~~~~~~v~~l   53 (249)
T cd01128          18 RGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLL   53 (249)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEEE
T ss_conf             778878999889999999999999858984999999