HHsearch alignment for GI: 254781215 and conserved domain: pfam00270
>pfam00270 DEAD DEAD/DEAH box helicase. Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression.
Probab=97.95 E-value=0.00015 Score=47.21 Aligned_cols=68 Identities=19% Similarity=0.145 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHHH
Q ss_conf 89999999999987405655542101246502576597899999999999808-99669998085899999999999999
Q gi|254781215|r 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTR-PGISVICLANSETQLKTTLWAEVSKW 131 (511)
Q Consensus 53 ~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~-p~~kv~vtApt~~Q~~~ilw~Ei~k~ 131 (511)
T Consensus 2 ~~Q~~~i~~~~~----g~--------~~iv~~pTGsGKT~~~~~~~l~~~~~~~~~~~~v~l~Pt~aL~~q~-~~~~~~~ 68 (167)
T pfam00270 2 PIQAEAIPAILE----GK--------DVLVQAPTGSGKTLAFLLPALQALLKNPDGPQALVLAPTRELAEQI-YEELKKL 68 (167)
T ss_pred HHHHHHHHHHHC----CC--------CEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHH-HHHHHHH
T ss_conf 459999999976----99--------7899889997589999999999987477898799990608888899-9886432
Q ss_pred HH
Q ss_conf 98
Q gi|254781215|r 132 LS 133 (511)
Q Consensus 132 ~~ 133 (511)
T Consensus 69 ~~ 70 (167)
T pfam00270 69 GK 70 (167)
T ss_pred HH
T ss_conf 10