HHsearch alignment for GI: 254781215 and conserved domain: pfam00580
>pfam00580 UvrD-helicase UvrD/REP helicase. The Rep family helicases are composed of four structural domains. The Rep family function as dimers. REP helicases catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. Bacillus subtilis addA and Escherichia coli exodeoxyribonuclease V beta have large insertions near to the carboxy-terminus relative to other members of the family.
Probab=92.23 E-value=0.3 Score=26.48 Aligned_cols=50 Identities=16% Similarity=0.218 Sum_probs=38.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHH--CCCCEEEEEECCHHHHHHHHHHHHHHHHH
Q ss_conf 24650257659789999999999980--89966999808589999999999999998
Q gi|254781215|r 79 KGAISAGRGIGKTTLNAWLVLWLMST--RPGISVICLANSETQLKTTLWAEVSKWLS 133 (511)
Q Consensus 79 r~aV~sgrG~GKS~l~a~l~lw~l~~--~p~~kv~vtApt~~Q~~~ilw~Ei~k~~~ 133 (511)
T Consensus 15 ~llV~AgAGSGKT~~L~~Ri~~li~~~~~~p~~IL~lTFT~kAA~-----Em~~Ri~ 66 (494)
T pfam00580 15 PLLVLAGAGTGKTRVLTERIAYLILEGGIDPEEILAVTFTNKAAR-----EMKERIL 66 (494)
T ss_pred CEEEEEECCHHHHHHHHHHHHHHHHHCCCCHHHEEEEECHHHHHH-----HHHHHHH
T ss_conf 979997187068999999999999818999747876702899999-----9999999