HHsearch alignment for GI: 254781215 and conserved domain: pfam04851
>pfam04851 ResIII Type III restriction enzyme, res subunit.
Probab=98.37 E-value=4.5e-06 Score=56.90 Aligned_cols=99 Identities=26% Similarity=0.329 Sum_probs=69.3
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHH
Q ss_conf 45899999999999874056555421012465025765978999999999998089966999808589999999999999
Q gi|254781215|r 51 PRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSK 130 (511)
Q Consensus 51 P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~~Q~~~ilw~Ei~k 130 (511)
T Consensus 4 LR~yQ~~a~~~~~~~~------------~~~i~~pTGsGKT~~~~~~i~~~~--~~~~~~lvlvp~~~L~~Q~------- 62 (103)
T pfam04851 4 LRPYQIEAIRNLLEKK------------RGLIVMATGSGKTLTAAKLIARLL--KGKKKVLFLVPRKDLLEQA------- 62 (103)
T ss_pred CCHHHHHHHHHHHHCC------------CEEEEECCCCCHHHHHHHHHHHHH--HCCCCEEEEECCHHHHHHH-------
T ss_conf 7299999999999639------------869995899987999999999998--4699299990829999999-------
Q ss_pred HHHHCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHCCCCCCEEEEECCHHCCCH-HHHH
Q ss_conf 998550001344432222223334443211123578616985303575561002120267614999711102997-8898
Q gi|254781215|r 131 WLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPD-VINL 209 (511)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ea~~G~h~~~~~lvI~DEAsgI~d-~i~e 209 (511)
T Consensus 63 -~~~----------------------------------------------------------~lii~DE~H~~~a~~~~~ 83 (103)
T pfam04851 63 -LEE----------------------------------------------------------FVIIIDEAHHSSAKTKYR 83 (103)
T ss_pred -HHH----------------------------------------------------------HHHHHHHHHHCCCHHHHH
T ss_conf -996----------------------------------------------------------564601635235378999
Q ss_pred HHHHHHCCCCCCEEEEEECCCCC
Q ss_conf 88888507998138998238998
Q gi|254781215|r 210 GILGFLTERNANRFWIMTSNPRR 232 (511)
Q Consensus 210 ~i~~~Lt~~g~~~~~i~~~nP~~ 232 (511)
T Consensus 84 ~l~~~~---~~~~~lGlTATP~R 103 (103)
T pfam04851 84 KILEYF---KPAFLLGLTATPER 103 (103)
T ss_pred HHHHHC---CCCEEEEEEECCCC
T ss_conf 999957---72608998008889