HHsearch alignment for GI: 254781215 and conserved domain: pfam04851

>pfam04851 ResIII Type III restriction enzyme, res subunit.
Probab=98.37  E-value=4.5e-06  Score=56.90  Aligned_cols=99  Identities=26%  Similarity=0.329  Sum_probs=69.3

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHH
Q ss_conf             45899999999999874056555421012465025765978999999999998089966999808589999999999999
Q gi|254781215|r   51 PRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSK  130 (511)
Q Consensus        51 P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~~Q~~~ilw~Ei~k  130 (511)
T Consensus         4 LR~yQ~~a~~~~~~~~------------~~~i~~pTGsGKT~~~~~~i~~~~--~~~~~~lvlvp~~~L~~Q~-------   62 (103)
T pfam04851         4 LRPYQIEAIRNLLEKK------------RGLIVMATGSGKTLTAAKLIARLL--KGKKKVLFLVPRKDLLEQA-------   62 (103)
T ss_pred             CCHHHHHHHHHHHHCC------------CEEEEECCCCCHHHHHHHHHHHHH--HCCCCEEEEECCHHHHHHH-------
T ss_conf             7299999999999639------------869995899987999999999998--4699299990829999999-------


Q ss_pred             HHHHCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHCCCCCCEEEEECCHHCCCH-HHHH
Q ss_conf             998550001344432222223334443211123578616985303575561002120267614999711102997-8898
Q gi|254781215|r  131 WLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPD-VINL  209 (511)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ea~~G~h~~~~~lvI~DEAsgI~d-~i~e  209 (511)
T Consensus        63 -~~~----------------------------------------------------------~lii~DE~H~~~a~~~~~   83 (103)
T pfam04851        63 -LEE----------------------------------------------------------FVIIIDEAHHSSAKTKYR   83 (103)
T ss_pred             -HHH----------------------------------------------------------HHHHHHHHHHCCCHHHHH
T ss_conf             -996----------------------------------------------------------564601635235378999


Q ss_pred             HHHHHHCCCCCCEEEEEECCCCC
Q ss_conf             88888507998138998238998
Q gi|254781215|r  210 GILGFLTERNANRFWIMTSNPRR  232 (511)
Q Consensus       210 ~i~~~Lt~~g~~~~~i~~~nP~~  232 (511)
T Consensus        84 ~l~~~~---~~~~~lGlTATP~R  103 (103)
T pfam04851        84 KILEYF---KPAFLLGLTATPER  103 (103)
T ss_pred             HHHHHC---CCCEEEEEEECCCC
T ss_conf             999957---72608998008889