HHsearch alignment for GI: 254781215 and conserved domain: pfam05970
>pfam05970 DUF889 PIF1 helicase. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated.
Probab=96.37 E-value=0.014 Score=34.86 Aligned_cols=97 Identities=23% Similarity=0.087 Sum_probs=52.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHH-HHHHHHHHHHHCHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 576597899999999999808996699980858999999-9999999998550001344432222223334443211123
Q gi|254781215|r 85 GRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTT-LWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLG 163 (511)
Q Consensus 85 grG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~~Q~~~i-lw~Ei~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (511)
T Consensus 2 ~AGTGKS~ll~~i~~~l~--~~~~~v~vtA~TGiAA~~i~gG~TiHs~---------~gi--------~--~~------- 53 (418)
T pfam05970 2 YGGTGKTFLWNALSARIR--SRGKIVLNVASSGIAALLLPGGRTAHSR---------FGI--------P--LD------- 53 (418)
T ss_pred CCCCCHHHHHHHHHHHHH--HCCCEEEEECCHHHHHHCCCCCEEHHHC---------CCC--------C--CC-------
T ss_conf 798879999999999997--6898899989689998516998739852---------698--------9--88-------
Q ss_pred CCCCEEEEEECCCCCCCCCHHHHCCCCCCEEEEECCHHCCCHHHHHHHHHHHC
Q ss_conf 57861698530357556100212026761499971110299788988888850
Q gi|254781215|r 164 IDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLT 216 (511)
Q Consensus 164 ~~~~~~~~~~~~~s~~~~ea~~G~h~~~~~lvI~DEAsgI~d~i~e~i~~~Lt 216 (511)
T Consensus 54 ~~~~~-~~~~~--~--~~~~~~~~~~--~~vLIIDEiSMv~~~lfd~id~~lr 99 (418)
T pfam05970 54 IDEDS-TCKIK--R--GSKLAELLKK--ASLIIWDEAPMTHRHCFEALDRTLR 99 (418)
T ss_pred CCCCC-CEEEC--C--CHHHHHHHHH--CCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 77420-11213--3--7788998740--8799985411357899999999999