HHsearch alignment for GI: 254781215 and conserved domain: pfam05970

>pfam05970 DUF889 PIF1 helicase. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated.
Probab=96.37  E-value=0.014  Score=34.86  Aligned_cols=97  Identities=23%  Similarity=0.087  Sum_probs=52.0

Q ss_pred             CCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHH-HHHHHHHHHHHCHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             576597899999999999808996699980858999999-9999999998550001344432222223334443211123
Q gi|254781215|r   85 GRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTT-LWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLG  163 (511)
Q Consensus        85 grG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~~Q~~~i-lw~Ei~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (511)
T Consensus         2 ~AGTGKS~ll~~i~~~l~--~~~~~v~vtA~TGiAA~~i~gG~TiHs~---------~gi--------~--~~-------   53 (418)
T pfam05970         2 YGGTGKTFLWNALSARIR--SRGKIVLNVASSGIAALLLPGGRTAHSR---------FGI--------P--LD-------   53 (418)
T ss_pred             CCCCCHHHHHHHHHHHHH--HCCCEEEEECCHHHHHHCCCCCEEHHHC---------CCC--------C--CC-------
T ss_conf             798879999999999997--6898899989689998516998739852---------698--------9--88-------


Q ss_pred             CCCCEEEEEECCCCCCCCCHHHHCCCCCCEEEEECCHHCCCHHHHHHHHHHHC
Q ss_conf             57861698530357556100212026761499971110299788988888850
Q gi|254781215|r  164 IDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLT  216 (511)
Q Consensus       164 ~~~~~~~~~~~~~s~~~~ea~~G~h~~~~~lvI~DEAsgI~d~i~e~i~~~Lt  216 (511)
T Consensus        54 ~~~~~-~~~~~--~--~~~~~~~~~~--~~vLIIDEiSMv~~~lfd~id~~lr   99 (418)
T pfam05970        54 IDEDS-TCKIK--R--GSKLAELLKK--ASLIIWDEAPMTHRHCFEALDRTLR   99 (418)
T ss_pred             CCCCC-CEEEC--C--CHHHHHHHHH--CCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             77420-11213--3--7788998740--8799985411357899999999999