HHsearch alignment for GI: 254781215 and conserved domain: pfam07652

>pfam07652 Flavi_DEAD Flavivirus DEAD domain.
Probab=97.17  E-value=0.0067  Score=36.90  Aligned_cols=133  Identities=20%  Similarity=0.062  Sum_probs=74.2

Q ss_pred             CCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             57659789999999999980899669998085899999999999999985500013444322222233344432111235
Q gi|254781215|r   85 GRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGI  164 (511)
Q Consensus        85 grG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~~Q~~~ilw~Ei~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (511)
T Consensus        10 HPGaGKTr~vLP~~v~~~i~-~~lRtlVLaPTRVV-----~~Em~eAL~g~~vr~~t~a~~~~-----------------   66 (146)
T pfam07652        10 HPGAGKTRKVLPELVRECID-RRLRTLVLAPTRVV-----LAEMEEALRGLPIRYHTPAVSSE-----------------   66 (146)
T ss_pred             CCCCCCCCHHHHHHHHHHHH-CCCEEEEECCHHHH-----HHHHHHHHCCCCCEEECHHHHCC-----------------
T ss_conf             89999702248999999997-28618997727999-----99999997589946752343136-----------------


Q ss_pred             CCCEEEEEECCCCCCCCCHHHHCCCCCCEEEEECCHHCCCHHHH--HHHHHHHCCCCCCEEEEEECCCCCCCCHHHHH
Q ss_conf             78616985303575561002120267614999711102997889--88888850799813899823899876556765
Q gi|254781215|r  165 DSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVIN--LGILGFLTERNANRFWIMTSNPRRLSGKFYEI  240 (511)
Q Consensus       165 ~~~~~~~~~~~~s~~~~ea~~G~h~~~~~lvI~DEAsgI~d~i~--e~i~~~Lt~~g~~~~~i~~~nP~~~~g~fy~~  240 (511)
T Consensus        67 ~~~~~ivdvmCHAT~t~r~l~~~~~~ny~viIMDE~H~~DP~SIAarG~~~~~~~~g~~a~i~mTATPPG~~~~fp~S  144 (146)
T pfam07652        67 HTGREIVDVMCHATFTQRLLSPVRVPNYEVIIMDEAHFTDPASIAARGYISTLVELGEAAAIFMTATPPGTSDPFPES  144 (146)
T ss_pred             CCCCCEEEEECHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCC
T ss_conf             688841889715988889736888564479998512238989999889999885438657999956899989989888