HHsearch alignment for GI: 254781215 and conserved domain: pfam07652
>pfam07652 Flavi_DEAD Flavivirus DEAD domain.
Probab=97.17 E-value=0.0067 Score=36.90 Aligned_cols=133 Identities=20% Similarity=0.062 Sum_probs=74.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 57659789999999999980899669998085899999999999999985500013444322222233344432111235
Q gi|254781215|r 85 GRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGI 164 (511)
Q Consensus 85 grG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~~Q~~~ilw~Ei~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (511)
T Consensus 10 HPGaGKTr~vLP~~v~~~i~-~~lRtlVLaPTRVV-----~~Em~eAL~g~~vr~~t~a~~~~----------------- 66 (146)
T pfam07652 10 HPGAGKTRKVLPELVRECID-RRLRTLVLAPTRVV-----LAEMEEALRGLPIRYHTPAVSSE----------------- 66 (146)
T ss_pred CCCCCCCCHHHHHHHHHHHH-CCCEEEEECCHHHH-----HHHHHHHHCCCCCEEECHHHHCC-----------------
T ss_conf 89999702248999999997-28618997727999-----99999997589946752343136-----------------
Q ss_pred CCCEEEEEECCCCCCCCCHHHHCCCCCCEEEEECCHHCCCHHHH--HHHHHHHCCCCCCEEEEEECCCCCCCCHHHHH
Q ss_conf 78616985303575561002120267614999711102997889--88888850799813899823899876556765
Q gi|254781215|r 165 DSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVIN--LGILGFLTERNANRFWIMTSNPRRLSGKFYEI 240 (511)
Q Consensus 165 ~~~~~~~~~~~~s~~~~ea~~G~h~~~~~lvI~DEAsgI~d~i~--e~i~~~Lt~~g~~~~~i~~~nP~~~~g~fy~~ 240 (511)
T Consensus 67 ~~~~~ivdvmCHAT~t~r~l~~~~~~ny~viIMDE~H~~DP~SIAarG~~~~~~~~g~~a~i~mTATPPG~~~~fp~S 144 (146)
T pfam07652 67 HTGREIVDVMCHATFTQRLLSPVRVPNYEVIIMDEAHFTDPASIAARGYISTLVELGEAAAIFMTATPPGTSDPFPES 144 (146)
T ss_pred CCCCCEEEEECHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCC
T ss_conf 688841889715988889736888564479998512238989999889999885438657999956899989989888