HHsearch alignment for GI: 254781215 and conserved domain: smart00488
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=97.82 E-value=0.0002 Score=46.52 Aligned_cols=81 Identities=28% Similarity=0.465 Sum_probs=56.9
Q ss_pred HHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHH-HHHHHHHHHHHH---CCC
Q ss_conf 7764214557775655578458999999999998740565554210124650257659789-999999999980---899
Q gi|254781215|r 32 VLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTT-LNAWLVLWLMST---RPG 107 (511)
Q Consensus 32 ~~~~~~w~~~~~~~~~~~~P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~-l~a~l~lw~l~~---~p~ 107 (511)
T Consensus 1 ~~~~FPy~-----------py~~Q~e~m~~v~~~l~~~~--------~~llEaPTGtGKTlalL~~al~~~~~~~~~~~~ 61 (289)
T smart00488 1 LLFYFPYE-----------PYPIQYEFMEELKRVLDRGK--------IGILESPTGTGKTLSLLCLTLTWLRSFPERIQK 61 (289)
T ss_pred CEECCCCC-----------CCHHHHHHHHHHHHHHHCCC--------EEEEECCCCHHHHHHHHHHHHHHHHHCHHCCCC
T ss_conf 93278999-----------99899999999999997499--------799989996518999999999999967010245
Q ss_pred CEEEEEECCHHHHHHHHHHHHHHHH
Q ss_conf 6699980858999999999999999
Q gi|254781215|r 108 ISVICLANSETQLKTTLWAEVSKWL 132 (511)
Q Consensus 108 ~kv~vtApt~~Q~~~ilw~Ei~k~~ 132 (511)
T Consensus 62 ~ki~~~t~t~~~~~~~-~~elr~~~ 85 (289)
T smart00488 62 IKLIYLSRTVSEIEKR-LEELRKLM 85 (289)
T ss_pred CEEEEEECCHHHHHHH-HHHHHHHC
T ss_conf 6168761537889999-99998632