HHsearch results for GI: 254781215 and protein with PDBid: 1gm5_A
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=96.86 E-value=0.015 Score=33.28 Aligned_cols=75 Identities=11% Similarity=0.106 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHH
Q ss_conf 89999999999987405655542101246502576597899999999999808996699980858999999999999999
Q gi|254781215|r 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWL 132 (511)
Q Consensus 53 ~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~~Q~~~ilw~Ei~k~~ 132 (511)
.=|++++.+|......+.. ..+-|.+.-|+|||.++...++..+. .+.++++.|||..=+.++ ..+++++.
T Consensus 371 ~~Q~~~~~~i~~d~~~~~~------~~~Llqa~TGSGKTlv~llpil~~i~--~g~q~lilaPTreLA~Q~-~~~~k~l~ 441 (780)
T 1gm5_A 371 NAQKRAHQEIRNDMISEKP------MNRLLQGDVGSGKTVVAQLAILDNYE--AGFQTAFMVPTSILAIQH-YRRTVESF 441 (780)
T ss_dssp HHHHHHHHHHHHHHHSSSC------CCCEEECCSSSSHHHHHHHHHHHHHH--HTSCEEEECSCHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCC------CEEEEECCCCCCCHHHHHHHHHHHHH--CCCCEEEEECCHHHHHHH-HHHHHHHH
T ss_conf 8899999999998618987------52899817897460999999999986--389559992528999999-99998761
Q ss_pred HHCH
Q ss_conf 8550
Q gi|254781215|r 133 SLLP 136 (511)
Q Consensus 133 ~~~~ 136 (511)
....
T Consensus 442 ~~~~ 445 (780)
T 1gm5_A 442 SKFN 445 (780)
T ss_dssp TCSS
T ss_pred CCCC
T ss_conf 1578