HHsearch results for GI: 254781215 and protein with PDBid: 1jr3_A

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=95.25  E-value=0.13  Score=27.41  Aligned_cols=150  Identities=13%  Similarity=0.146  Sum_probs=72.6

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHH
Q ss_conf             77565557845899999999999874056555421012465025765978999999999998089966999808589999
Q gi|254781215|r   42 GTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLK  121 (511)
Q Consensus        42 ~~~~~~~~~P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~~Q~~  121 (511)
                      +..+..+.|    |.++.+.+.....++..-|     -+-..+..|+|||+++-.++-...+..+....-|..  -..-+
T Consensus        12 P~~~~d~ig----~~~~~~~l~~~~~~~~~~h-----~~L~~Gp~G~GKt~~a~~la~~l~~~~~~~~~~~~~--~~~~~   80 (373)
T 1jr3_A           12 PQTFADVVG----QEHVLTALANGLSLGRIHH-----AYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGV--CDNCR   80 (373)
T ss_dssp             CCSTTTSCS----CHHHHHHHHHHHHHTCCCS-----EEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSS--SHHHH
T ss_pred             CCCHHHCCC----HHHHHHHHHHHHHCCCCCC-----EEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCC--CHHHH
T ss_conf             898998059----6999999999997699771-----476579999889999999999867877887676765--35899


Q ss_pred             HHHHHHHHHHHHHCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHCCCCCCEEEEECCHH
Q ss_conf             99999999999855000134443222222333444321112357861698530357556100212026761499971110
Q gi|254781215|r  122 TTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEAS  201 (511)
Q Consensus       122 ~ilw~Ei~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ea~~G~h~~~~~lvI~DEAs  201 (511)
                           ++..  ...+.  .......           ..  ...  +.........      +.....+.+ -++|+||+.
T Consensus        81 -----~~~~--~~~~d--~~~~~~~-----------~~--~~i--~~ir~~~~~~------~~~~~~~~~-kviiide~d  129 (373)
T 1jr3_A           81 -----EIEQ--GRFVD--LIEIDAA-----------SR--TKV--EDTRDLLDNV------QYAPARGRF-KVYLIDEVH  129 (373)
T ss_dssp             -----HHHT--SCCSS--CEEEETT-----------CS--CCS--SCHHHHHHHT------TSCCSSSSS-EEEEEECGG
T ss_pred             -----HHHC--CCCCC--EEEECCC-----------CC--CCH--HHHHHHHHHH------HHCCCCCCC-EEEEEECCC
T ss_conf             -----9975--89971--7985221-----------02--889--9999999998------546657997-699986836


Q ss_pred             CCCHHHHHHHHHHHCCCCCCEEEEEECC-CCCC
Q ss_conf             2997889888888507998138998238-9987
Q gi|254781215|r  202 GTPDVINLGILGFLTERNANRFWIMTSN-PRRL  233 (511)
Q Consensus       202 gI~d~i~e~i~~~Lt~~g~~~~~i~~~n-P~~~  233 (511)
                      .+.....+++..+|-.+....++++++| |.+.
T Consensus       130 ~l~~~a~n~Llk~lEep~~~~~~il~t~~~~~~  162 (373)
T 1jr3_A          130 MLSRHSFNALLKTLEEPPEHVKFLLATTDPQKL  162 (373)
T ss_dssp             GSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGS
T ss_pred             CCCHHHHHHHHHHHHCCCCCEEEEEECCCHHHC
T ss_conf             389999999999985788673898844875654