HHsearch results for GI: 254781215 and protein with PDBid: 1sxj_D
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ ATPase, DNA polymerase; HET: ATG ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.55 E-value=0.014 Score=33.52 Aligned_cols=143 Identities=19% Similarity=0.140 Sum_probs=70.3
Q ss_pred CCCCC--CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHC-CCCEEEE-
Q ss_conf 14557--7756555784589999999999987405655542101246502576597899999999999808-9966999-
Q gi|254781215|r 37 PWGEK--GTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTR-PGISVIC- 112 (511)
Q Consensus 37 ~w~~~--~~~~~~~~~P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~-p~~kv~v- 112 (511)
||-+| ++.+..+.| |.++.+.+.....++.. |. +...++.|+|||+++-.++--..... ....+..
T Consensus 26 pw~eKyrP~~~~divg----~~~~~~~L~~~i~~~~~---~~---lLl~Gp~G~GKTt~a~~la~~~~~~~~~~~~~~~~ 95 (353)
T 1sxj_D 26 PWVEKYRPKNLDEVTA----QDHAVTVLKKTLKSANL---PH---MLFYGPPGTGKTSTILALTKELYGPDLMKSRILEL 95 (353)
T ss_dssp CHHHHTCCSSTTTCCS----CCTTHHHHHHHTTCTTC---CC---EEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEE
T ss_pred CHHHHHCCCCHHHHCC----CHHHHHHHHHHHHCCCC---CE---EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCHHH
T ss_conf 4168658998999139----69999999999976998---75---99889599989999999998447875445440121
Q ss_pred EECCHHHHHHHHHHHHHHHHHHCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHCCCCCC
Q ss_conf 80858999999999999999855000134443222222333444321112357861698530357556100212026761
Q gi|254781215|r 113 LANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYG 192 (511)
Q Consensus 113 tApt~~Q~~~ilw~Ei~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ea~~G~h~~~~ 192 (511)
.+...... ......+....+...... .. ...........
T Consensus 96 ~~~~~~~~-~~~~~~~~~~~~~~~~~~-------------------------------------~~---~~~~~~~~~~~ 134 (353)
T 1sxj_D 96 NASDERGI-SIVREKVKNFARLTVSKP-------------------------------------SK---HDLENYPCPPY 134 (353)
T ss_dssp CSSSCCCH-HHHTTHHHHHHHSCCCCC-------------------------------------CT---THHHHSCCCSC
T ss_pred HCCCCCCC-HHHHHHHHHHHHHHHHHH-------------------------------------HH---HHHHCCCCCCC
T ss_conf 10134573-077889999987744223-------------------------------------56---67650466772
Q ss_pred EEEEECCHHCCCHHHHHHHHHHHCCCCCCEEEEEECCC
Q ss_conf 49997111029978898888885079981389982389
Q gi|254781215|r 193 MAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNP 230 (511)
Q Consensus 193 ~lvI~DEAsgI~d~i~e~i~~~Lt~~g~~~~~i~~~nP 230 (511)
-.+|+||+..+......++..++........++.+.|.
T Consensus 135 kviiiDe~d~l~~~~~~~l~~~~e~~~~~~~~i~~~~~ 172 (353)
T 1sxj_D 135 KIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNY 172 (353)
T ss_dssp EEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESC
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCCCCCCCEEEECCCC
T ss_conf 59999670306899999987520368743223221476