HHsearch results for GI: 254781215 and protein with PDBid: 2chq_A

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=95.29  E-value=0.04  Score=30.65  Aligned_cols=135  Identities=18%  Similarity=0.110  Sum_probs=71.5

Q ss_pred             CCCCC--CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf             45577--7565557845899999999999874056555421012465025765978999999999998089966999808
Q gi|254781215|r   38 WGEKG--TPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLAN  115 (511)
Q Consensus        38 w~~~~--~~~~~~~~P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtAp  115 (511)
                      |-++-  ..+..+.|    |.++.+.+.....++..   |.   +-..+..|+|||+++-.++-...+......+...-.
T Consensus         7 w~~ky~P~~~~diig----~~~~~~~l~~~i~~~~~---~~---~L~~Gp~G~GKttla~~la~~l~~~~~~~~~~~~~~   76 (319)
T 2chq_A            7 WVEKYRPRTLDEVVG----QDEVIQRLKGYVERKNI---PH---LLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNA   76 (319)
T ss_dssp             TTTTTSCSSGGGSCS----CHHHHHHHHTTTTTTCC---CC---EEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEET
T ss_pred             HHHCCCCCCHHHHCC----HHHHHHHHHHHHHCCCC---CE---EEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEC
T ss_conf             224179998999139----59999999999977999---87---998897999999999999997344567876477535


Q ss_pred             CHHHHHHHHHHHHHHHHHHCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHCCCCCCEEE
Q ss_conf             58999999999999999855000134443222222333444321112357861698530357556100212026761499
Q gi|254781215|r  116 SETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAI  195 (511)
Q Consensus       116 t~~Q~~~ilw~Ei~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ea~~G~h~~~~~lv  195 (511)
                      +...-.+....++...                                         +..         ....+.....+
T Consensus        77 ~~~~~~~~~~~~~~~~-----------------------------------------~~~---------~~~~~~~~~~i  106 (319)
T 2chq_A           77 SDERGIDVVRHKIKEF-----------------------------------------ART---------APIGGAPFKII  106 (319)
T ss_dssp             TSTTCTTTSSHHHHHH-----------------------------------------HHS---------CCSSSCCCEEE
T ss_pred             CCCCCHHHHHHHHHHH-----------------------------------------HHH---------HHCCCCCEEEE
T ss_conf             6777637899999998-----------------------------------------874---------44069964899


Q ss_pred             EECCHHCCCHHHHHHHHHHHCCCCCCEEEEEECCCCC
Q ss_conf             9711102997889888888507998138998238998
Q gi|254781215|r  196 INDEASGTPDVINLGILGFLTERNANRFWIMTSNPRR  232 (511)
Q Consensus       196 I~DEAsgI~d~i~e~i~~~Lt~~g~~~~~i~~~nP~~  232 (511)
                      ++||+..+......++...+........++.+.|...
T Consensus       107 iide~d~l~~~~q~~ll~~le~~~~~~~~i~~~~~~~  143 (319)
T 2chq_A          107 FLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVS  143 (319)
T ss_dssp             EEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGG
T ss_pred             EEECCCCCCHHHHHHHHHHHHCCCCCCEECCCCCCCC
T ss_conf             9725331679999999877612786511102568501