HHsearch results for GI: 254781215 and protein with PDBid: 2chq_A
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=95.29 E-value=0.04 Score=30.65 Aligned_cols=135 Identities=18% Similarity=0.110 Sum_probs=71.5
Q ss_pred CCCCC--CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 45577--7565557845899999999999874056555421012465025765978999999999998089966999808
Q gi|254781215|r 38 WGEKG--TPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLAN 115 (511)
Q Consensus 38 w~~~~--~~~~~~~~P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtAp 115 (511)
|-++- ..+..+.| |.++.+.+.....++.. |. +-..+..|+|||+++-.++-...+......+...-.
T Consensus 7 w~~ky~P~~~~diig----~~~~~~~l~~~i~~~~~---~~---~L~~Gp~G~GKttla~~la~~l~~~~~~~~~~~~~~ 76 (319)
T 2chq_A 7 WVEKYRPRTLDEVVG----QDEVIQRLKGYVERKNI---PH---LLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNA 76 (319)
T ss_dssp TTTTTSCSSGGGSCS----CHHHHHHHHTTTTTTCC---CC---EEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEET
T ss_pred HHHCCCCCCHHHHCC----HHHHHHHHHHHHHCCCC---CE---EEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEC
T ss_conf 224179998999139----59999999999977999---87---998897999999999999997344567876477535
Q ss_pred CHHHHHHHHHHHHHHHHHHCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHCCCCCCEEE
Q ss_conf 58999999999999999855000134443222222333444321112357861698530357556100212026761499
Q gi|254781215|r 116 SETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAI 195 (511)
Q Consensus 116 t~~Q~~~ilw~Ei~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ea~~G~h~~~~~lv 195 (511)
+...-.+....++... +.. ....+.....+
T Consensus 77 ~~~~~~~~~~~~~~~~-----------------------------------------~~~---------~~~~~~~~~~i 106 (319)
T 2chq_A 77 SDERGIDVVRHKIKEF-----------------------------------------ART---------APIGGAPFKII 106 (319)
T ss_dssp TSTTCTTTSSHHHHHH-----------------------------------------HHS---------CCSSSCCCEEE
T ss_pred CCCCCHHHHHHHHHHH-----------------------------------------HHH---------HHCCCCCEEEE
T ss_conf 6777637899999998-----------------------------------------874---------44069964899
Q ss_pred EECCHHCCCHHHHHHHHHHHCCCCCCEEEEEECCCCC
Q ss_conf 9711102997889888888507998138998238998
Q gi|254781215|r 196 INDEASGTPDVINLGILGFLTERNANRFWIMTSNPRR 232 (511)
Q Consensus 196 I~DEAsgI~d~i~e~i~~~Lt~~g~~~~~i~~~nP~~ 232 (511)
++||+..+......++...+........++.+.|...
T Consensus 107 iide~d~l~~~~q~~ll~~le~~~~~~~~i~~~~~~~ 143 (319)
T 2chq_A 107 FLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVS 143 (319)
T ss_dssp EEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGG
T ss_pred EEECCCCCCHHHHHHHHHHHHCCCCCCEECCCCCCCC
T ss_conf 9725331679999999877612786511102568501