HHsearch results for GI: 254781215 and protein with PDBid: 2eyq_A
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=96.99 E-value=0.016 Score=33.10 Aligned_cols=157 Identities=11% Similarity=0.037 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999998740565554210124650257659789999999999980899669998085899999999999999985
Q gi|254781215|r 55 QLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSL 134 (511)
Q Consensus 55 Q~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~~Q~~~ilw~Ei~k~~~~ 134 (511)
|.+++.+|-.....+..+ ..-|.+--|+|||.++...++-. ...+..+++.+||..=+.+. +..+++....
T Consensus 608 q~~a~~~i~~~~~~~~~~------~~L~~g~tGsGKT~v~~~a~~~a--~~~g~qv~il~PT~~La~Q~-~~~~~~~~~~ 678 (1151)
T 2eyq_A 608 QAQAINAVLSDMCQPLAM------DRLVCGDVGFGKTEVAMRAAFLA--VDNHKQVAVLVPTTLLAQQH-YDNFRDRFAN 678 (1151)
T ss_dssp HHHHHHHHHHHHHSSSCC------EEEEECCCCTTTHHHHHHHHHHH--HTTTCEEEEECSSHHHHHHH-HHHHHHHSTT
T ss_pred HHHHHHHHHHHHHCCCHH------HHEEECCCCCCHHHHHHHHHHHH--HHCCCEEEEEECCHHHHHHH-HHHHHHHHHC
T ss_conf 999999998876068556------66434078986699999999998--63586489994849999999-9999997511
Q ss_pred CHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHH-CCCCCCEEEEECCHHCCCHHHHHHHHH
Q ss_conf 5000134443222222333444321112357861698530357556100212-026761499971110299788988888
Q gi|254781215|r 135 LPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVG-HHNTYGMAIINDEASGTPDVINLGILG 213 (511)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ea~~G-~h~~~~~lvI~DEAsgI~d~i~e~i~~ 213 (511)
.+.+-. .................+..+.-. +..+ .++.+.. +.-.+.-|+|+||+.-......+.+..
T Consensus 679 ~~~~v~----~l~~~~~~~e~~~~l~~~~~G~i~-iiig------T~~~l~~~~~f~~Lgl~iiDE~h~f~~~~~~~~k~ 747 (1151)
T 2eyq_A 679 WPVRIE----MISRFRSAKEQTQILAEVAEGKID-ILIG------THKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKA 747 (1151)
T ss_dssp TTCCEE----EESTTSCHHHHHHHHHHHHTTCCS-EEEE------CTHHHHSCCCCSSEEEEEEESGGGSCHHHHHHHHH
T ss_pred CCCEEE----EEECCCCHHHHHHHHHHHCCCCCC-EEEC------CHHHCCCCCCCCCCCEEEECHHHHHHHHHHHHHHH
T ss_conf 597899----851776288999999874389834-4742------58880276021556734624255521989999985
Q ss_pred HHCCCCCCEEEEEECCCCCCC
Q ss_conf 850799813899823899876
Q gi|254781215|r 214 FLTERNANRFWIMTSNPRRLS 234 (511)
Q Consensus 214 ~Lt~~g~~~~~i~~~nP~~~~ 234 (511)
... +.. .+.++.+|.-.+
T Consensus 748 ~~~--~~~-~l~~sATp~prt 765 (1151)
T 2eyq_A 748 MRA--NVD-ILTLTATPIPRT 765 (1151)
T ss_dssp HHT--TSE-EEEEESSCCCHH
T ss_pred HCC--CCC-EEEECCCCCHHH
T ss_conf 078--975-885105687789