HHsearch results for GI: 254781215 and protein with PDBid: 2fwr_A
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=98.05 E-value=0.00012 Score=46.61 Aligned_cols=142 Identities=13% Similarity=0.024 Sum_probs=71.5
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH
Q ss_conf 84589999999999987405655542101246502576597899999999999808996699980858999999999999
Q gi|254781215|r 50 APRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVS 129 (511)
Q Consensus 50 ~P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~~Q~~~ilw~Ei~ 129 (511)
.||+||++++..+..+ . +..|.++-|.|||.++..++.. -+.++++++||..-+.+ .-.++.
T Consensus 93 ~Lr~yQ~eav~~~~~~----~--------~gvi~~pTGsGKT~ial~~i~~-----~~~~~LivvPt~~L~~Q-~~~~~~ 154 (472)
T 2fwr_A 93 SLRDYQEKALERWLVD----K--------RGCIVLPTGSGKTHVAMAAINE-----LSTPTLIVVPTLALAEQ-WKERLG 154 (472)
T ss_dssp CBCHHHHHHHHHHTTT----T--------EEEEECCTTSCHHHHHHHHHHH-----HCSCEEEEESSHHHHHH-HHHHGG
T ss_pred CCCHHHHHHHHHHHHC----C--------CCEEECCCCCCHHHHHHHHHHH-----HCCCEEEEECCHHHHHH-HHHHHH
T ss_conf 9799999999999967----9--------9899978998699999999998-----48999999787999999-999998
Q ss_pred HHHHHCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHCCCCCCEEEEECCHHCCCHHHHH
Q ss_conf 99985500013444322222233344432111235786169853035755610021202676149997111029978898
Q gi|254781215|r 130 KWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINL 209 (511)
Q Consensus 130 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ea~~G~h~~~~~lvI~DEAsgI~d~i~e 209 (511)
++. ... .. .+. .. ........+.+..... ...+. + .....++|+||++.++...+.
T Consensus 155 ~~~----~~~-----v~-~~~----g~-----~~~~~~i~i~t~~~~~-~~~~~---~-~~~~~lvI~DE~h~~~~~~~~ 210 (472)
T 2fwr_A 155 IFG----EEY-----VG-EFS----GR-----IKELKPLTVSTYDSAY-VNAEK---L-GNRFMLLIFDEVHHLPAESYV 210 (472)
T ss_dssp GGC----GGG-----EE-EBS----SS-----CBCCCSEEEEEHHHHH-HTHHH---H-TTTCSEEEEETGGGTTSTTTH
T ss_pred HCC----CCE-----EE-EEC----CC-----CCCCCEEEEEEEHHHH-HCHHH---H-CCCCCEEEEECHHHCCCHHHH
T ss_conf 527----844-----88-852----65-----3445508999616665-35786---4-236678995220200100135
Q ss_pred HHHHHHCCCCCCEEEEEECCCCCCCCH
Q ss_conf 888885079981389982389987655
Q gi|254781215|r 210 GILGFLTERNANRFWIMTSNPRRLSGK 236 (511)
Q Consensus 210 ~i~~~Lt~~g~~~~~i~~~nP~~~~g~ 236 (511)
.+.-. ...+..+..+++|.+..+.
T Consensus 211 ~i~~~---~~~~~~l~ltaT~~r~~~~ 234 (472)
T 2fwr_A 211 QIAQM---SIAPFRLGLTATFEREDGR 234 (472)
T ss_dssp HHHHT---CCCSEEEEEESCCCCTTSG
T ss_pred HHHHC---CCCCEEEEEEEEEECCCCH
T ss_conf 65422---5400476310013035303