HHsearch results for GI: 254781215 and protein with PDBid: 2fz4_A
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding protein; HET: DNA; 2.40A {Archaeoglobus fulgidus dsm 4304} SCOP: c.37.1.19
Probab=98.44 E-value=1.9e-06 Score=57.86 Aligned_cols=142 Identities=13% Similarity=0.033 Sum_probs=74.7
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH
Q ss_conf 78458999999999998740565554210124650257659789999999999980899669998085899999999999
Q gi|254781215|r 49 SAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEV 128 (511)
Q Consensus 49 ~~P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~~Q~~~ilw~Ei 128 (511)
..||+||.+++..+.. + .+..|.+.-|.|||.++..++. .-+.++++++|+..-+.+ ...++
T Consensus 92 ~~Lr~yQ~eai~~~~~----~--------~~gll~~pTGsGKT~ial~~i~-----~~~~~~LvvvP~~~L~~Q-w~~~~ 153 (237)
T 2fz4_A 92 ISLRDYQEKALERWLV----D--------KRGCIVLPTGSGKTHVAMAAIN-----ELSTPTLIVVPTLALAEQ-WKERL 153 (237)
T ss_dssp CCCCHHHHHHHHHHTT----T--------SEEEEEESSSTTHHHHHHHHHH-----HSCSCEEEEESSHHHHHH-HHHHH
T ss_pred CCCCHHHHHHHHHHHH----C--------CCCEEEECCCCCHHHHHHHHHH-----HHCCCEEEEECCHHHHHH-HHHHH
T ss_conf 9859999999999996----8--------9969993899988899999999-----848988999774788778-99999
Q ss_pred HHHHHHCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHCCCCCCEEEEECCHHCCCHHHH
Q ss_conf 99998550001344432222223334443211123578616985303575561002120267614999711102997889
Q gi|254781215|r 129 SKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVIN 208 (511)
Q Consensus 129 ~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ea~~G~h~~~~~lvI~DEAsgI~d~i~ 208 (511)
.++.... ...+. +. ..........+.... ...++.+ .....++|+|||+-++...|
T Consensus 154 ~~~~~~~----------~~~~~-g~--------~~~~~~i~i~t~~s~-~~~~~~~----~~~f~lvIiDEaH~l~~~~~ 209 (237)
T 2fz4_A 154 GIFGEEY----------VGEFS-GR--------IKELKPLTVSTYDSA-YVNAEKL----GNRFMLLIFDEVHHLPAESY 209 (237)
T ss_dssp GGGCGGG----------EEEES-SS--------CBCCCSEEEEEHHHH-HHTHHHH----TTTCSEEEEECSSCCCTTTH
T ss_pred HHHCCCC----------CEEEC-CC--------CCCCCCCCCCHHHHH-HHHHHHH----CCCCCEEEEECCCCCCCHHH
T ss_conf 9736012----------31342-55--------344542101148999-8618862----78665899979730687799
Q ss_pred HHHHHHHCCCCCCEEEEEECCCCCCCC
Q ss_conf 888888507998138998238998765
Q gi|254781215|r 209 LGILGFLTERNANRFWIMTSNPRRLSG 235 (511)
Q Consensus 209 e~i~~~Lt~~g~~~~~i~~~nP~~~~g 235 (511)
..+... ..++..+.++++|.|..|
T Consensus 210 ~~i~~~---~~~~~rLgLTATP~R~Dg 233 (237)
T 2fz4_A 210 VQIAQM---SIAPFRLGLTATFEREDG 233 (237)
T ss_dssp HHHHHT---CCCSEEEEEEESCC----
T ss_pred HHHHHC---CCCCEEEEEECCCCCCCC
T ss_conf 999861---788829999228867898