HHsearch results for GI: 254781215 and protein with PDBid: 2oca_A
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=98.52 E-value=1.8e-05 Score=51.79 Aligned_cols=156 Identities=10% Similarity=0.038 Sum_probs=83.6
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH
Q ss_conf 84589999999999987405655542101246502576597899999999999808996699980858999999999999
Q gi|254781215|r 50 APRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVS 129 (511)
Q Consensus 50 ~P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~~Q~~~ilw~Ei~ 129 (511)
-||++|.+++..+-.+. +..+.++.|.|||.+++.++.++... .+.++++++|+..-+.+. ..++.
T Consensus 113 ~~r~yQ~~ai~~~l~~~------------~~li~~pTGsGKTli~~~l~~~~~~~-~~~k~LiivP~~~Lv~Q~-~~~~~ 178 (510)
T 2oca_A 113 EPHWYQKDAVFEGLVNR------------RRILNLPTSAGRSLIQALLARYYLEN-YEGKILIIVPTTALTTQM-ADDFV 178 (510)
T ss_dssp CCCHHHHHHHHHHHHHS------------EEEEECCSTTTHHHHHHHHHHHHHHH-CSSEEEEEESSHHHHHHH-HHHHH
T ss_pred CCHHHHHHHHHHHHHCC------------CEEEEECCCCHHHHHHHHHHHHHHHC-CCCEEEEEECHHHHHHHH-HHHHH
T ss_conf 77799999999999779------------86999799807999999999998755-798599997949999999-99998
Q ss_pred HHHHHCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHCCCCCCEEEEECCHHCCCHHHHH
Q ss_conf 99985500013444322222233344432111235786169853035755610021202676149997111029978898
Q gi|254781215|r 130 KWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINL 209 (511)
Q Consensus 130 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ea~~G~h~~~~~lvI~DEAsgI~d~i~e 209 (511)
+.... +. .. ...+...... ...........+.+...... .+.. +. +...++|+|||+......+.
T Consensus 179 ~~~~~-~~--~~---v~~i~~~~~~----~~~~~~~~~i~i~t~qs~~~-~~~~---~~-~~~~~vIiDE~H~~~~~~~~ 243 (510)
T 2oca_A 179 DYRLF-SH--AM---IKKIGGGASK----DDKYKNDAPVVVGTWQTVVK-QPKE---WF-SQFGMMMNDECHLATGKSIS 243 (510)
T ss_dssp HTTSS-CG--GG---EEECGGGCCT----TGGGCTTCSEEEEEHHHHTT-SCGG---GG-GGEEEEEEETGGGCCHHHHH
T ss_pred HHCCC-CC--CC---EEEECCCCCC----CCCCCCCCCEEEEECHHHHH-HHHH---HH-CCCCEEEEEHHHHHHHHHHH
T ss_conf 75567-65--43---1342265334----42025676099984323333-2676---51-35787997423320123588
Q ss_pred HHHHHHCCCCCCEEEEEECCCCCCCCH
Q ss_conf 888885079981389982389987655
Q gi|254781215|r 210 GILGFLTERNANRFWIMTSNPRRLSGK 236 (511)
Q Consensus 210 ~i~~~Lt~~g~~~~~i~~~nP~~~~g~ 236 (511)
.+...+. .....+-+++++.+....
T Consensus 244 ~il~~~~--~~~~~l~~T~t~~~~~~~ 268 (510)
T 2oca_A 244 SIISGLN--NCMFKFGLSGSLRDGKAN 268 (510)
T ss_dssp HHGGGCT--TCCEEEEEESCGGGCSSC
T ss_pred HHHHHHC--CCCHHEEEEECCCCCCCE
T ss_conf 9988751--100011443113587530