HHsearch results for GI: 254781215 and protein with PDBid: 2z83_A
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=96.68 E-value=0.0081 Score=35.00 Aligned_cols=136 Identities=15% Similarity=0.035 Sum_probs=61.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 46502576597899999999999808996699980858999999999999999855000134443222222333444321
Q gi|254781215|r 80 GAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLH 159 (511)
Q Consensus 80 ~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~~Q~~~ilw~Ei~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (511)
+.|.+.-|+|||......++..... .+.+++|++||..=+.+ +.+.++...... ......
T Consensus 24 ~vi~~~TGSGKT~~~l~~ll~~~~~-~~~rvlil~PtR~La~q-----v~e~l~g~~v~~--------------~~~~~~ 83 (459)
T 2z83_A 24 TVLDLHPGSGKTRKILPQIIKDAIQ-QRLRTAVLAPTRVVAAE-----MAEALRGLPVRY--------------QTSAVQ 83 (459)
T ss_dssp EEECCCTTSCTTTTHHHHHHHHHHH-TTCCEEEEECSHHHHHH-----HHHHTTTSCEEE--------------CC----
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHH-CCCEEEEEHHHHHHHHH-----HHHHHCCCCCCE--------------EEEEEE
T ss_conf 8999699996889999999998873-79869998679999999-----999956988853--------------645688
Q ss_pred CCCCCCCCEEEEEECCCCCCCCCHHHHCCCCCCEEEEECCHHCCCHHHH--HHHHHHHCCCCCCEEEEEECCCCCCCCHH
Q ss_conf 1123578616985303575561002120267614999711102997889--88888850799813899823899876556
Q gi|254781215|r 160 CSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVIN--LGILGFLTERNANRFWIMTSNPRRLSGKF 237 (511)
Q Consensus 160 ~~~~~~~~~~~~~~~~~s~~~~ea~~G~h~~~~~lvI~DEAsgI~d~i~--e~i~~~Lt~~g~~~~~i~~~nP~~~~g~f 237 (511)
..........+++.-.... .-.....-.+..++|+|||+..+.... ....-.+........+++..+|.+....|
T Consensus 84 ~~~~~~~~I~v~T~~~L~~---~l~~~~~~~~~~~vIIDEaH~~~~~~~~~~~~l~~~~~~~~~~lI~mSAT~p~~~~~~ 160 (459)
T 2z83_A 84 REHQGNEIVDVMCHATLTH---RLMSPNRVPNYNLFVMDEAHFTDPASIAARGYIATKVELGEAAAIFMTATPPGTTDPF 160 (459)
T ss_dssp ----CCCSEEEEEHHHHHH---HHHSCC-CCCCSEEEESSTTCCSHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSS
T ss_pred ECCCCCCCEEEECCHHHHH---HHHCCCCCCCCCEEEEECHHHCCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCEEEC
T ss_conf 1146998889979469999---9835655146528999441222545368899999863477672899626987633322
Q ss_pred H
Q ss_conf 7
Q gi|254781215|r 238 Y 238 (511)
Q Consensus 238 y 238 (511)
-
T Consensus 161 ~ 161 (459)
T 2z83_A 161 P 161 (459)
T ss_dssp C
T ss_pred C
T ss_conf 4