HHsearch results for GI: 254781215 and protein with PDBid: 3ber_A
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural genomics consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=97.87 E-value=0.00013 Score=46.24 Aligned_cols=78 Identities=18% Similarity=0.122 Sum_probs=57.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCC-CCEEEEEECCHHHHHHHH
Q ss_conf 5557845899999999999874056555421012465025765978999999999998089-966999808589999999
Q gi|254781215|r 46 EGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRP-GISVICLANSETQLKTTL 124 (511)
Q Consensus 46 ~~~~~P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p-~~kv~vtApt~~Q~~~il 124 (511)
.+|.-|-+.|++.+..+-. + + -+.|.|..|+|||.....-++..+...+ ..++++.+||..-+.++
T Consensus 61 ~G~~~pt~IQ~~aip~il~----g--~------dvlv~A~TGSGKTla~~lp~l~~~~~~~~~~~~lil~PtreLa~q~- 127 (249)
T 3ber_A 61 LGWTKPTKIQIEAIPLALQ----G--R------DIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQI- 127 (249)
T ss_dssp TTCCSCCHHHHHHHHHHHT----T--C------CEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHH-
T ss_pred CCCCCCCHHHHHHHHHHHC----C--C------CEEEECCCCCCCCEEEECCCCCCCCCCCCCCEEEEECCCHHHHHHH-
T ss_conf 7999999999999999977----9--9------9899827999661389712222324467774499977758987666-
Q ss_pred HHHHHHHHHHCH
Q ss_conf 999999998550
Q gi|254781215|r 125 WAEVSKWLSLLP 136 (511)
Q Consensus 125 w~Ei~k~~~~~~ 136 (511)
...+.+......
T Consensus 128 ~~~~~~l~~~~~ 139 (249)
T 3ber_A 128 SEQFEALGSSIG 139 (249)
T ss_dssp HHHHHHHHGGGT
T ss_pred HHHHHHHCCCCC
T ss_conf 677664303678