HHsearch results for GI: 254781215 and protein with PDBid: 3cpe_A
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=100.00 E-value=2.7e-42 Score=283.97 Aligned_cols=419 Identities=16% Similarity=0.153 Sum_probs=290.7
Q ss_pred CCCHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECC
Q ss_conf 46746788899987070666528866776421455777565557845899999999999874056555421012465025
Q gi|254781215|r 6 PTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAG 85 (511)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sg 85 (511)
++.+++.+|+ ..|++||+-|+.-++---...+.+-.|+ |.+||+++++.+.++++ ..|..|
T Consensus 126 ~~t~~~~~e~------~kc~~d~~yF~~~y~~i~~~~~g~vpf~-l~~~Q~~~l~~~~~~Rf------------~Iilk~ 186 (592)
T 3cpe_A 126 QWTREMVEEW------KKCRDDIVYFAETYCAITHIDYGVIKVQ-LRDYQRDMLKIMSSKRM------------TVCNLS 186 (592)
T ss_dssp CCCHHHHHHH------HHHHTCHHHHHHHTCBCCBTTTBSBBCC-CCHHHHHHHHHHHHCSE------------EEEEEC
T ss_pred CCCHHHHHHH------HHHHCCHHHHHHHEEEEECCCCCEEECC-CCHHHHHHHHHHHHCCE------------EEEEEC
T ss_conf 7789999999------9874088999862189987889844276-76999999999874376------------899946
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 76597899999999999808996699980858999999999999999855000134443222222333444321112357
Q gi|254781215|r 86 RGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGID 165 (511)
Q Consensus 86 rG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~~Q~~~ilw~Ei~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (511)
||+|||++++++++|+++++|+.+++++||+++|++.+ +..++.++..+|......... .....+...
T Consensus 187 RQ~GKSt~~a~~~l~~al~~~~~~i~ivA~~~~~A~~i-~~~ik~~~~~lP~~l~~~~~~-----------~n~~~i~~~ 254 (592)
T 3cpe_A 187 RQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEV-LDRTKQAIELLPDFLQPGIVE-----------WNKGSIELD 254 (592)
T ss_dssp SSSCHHHHHHHHHHHHHHTSSSCEEEEEESSHHHHHHH-HHHHHHHHTTSCTTTSCCEEE-----------ECSSEEEET
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHH-HHHHHHHHHHCCHHHCCCCCC-----------CCCCEEEEC
T ss_conf 98869999999999999829997599991989999999-999999999681330466434-----------664126745
Q ss_pred CCEEEEEECCCCCCCCCHHHHCCCCCCEEEEECCHHCCCH--HHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHHHHC
Q ss_conf 8616985303575561002120267614999711102997--88988888850799813899823899876556765303
Q gi|254781215|r 166 SKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPD--VINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNK 243 (511)
Q Consensus 166 ~~~~~~~~~~~s~~~~ea~~G~h~~~~~lvI~DEAsgI~d--~i~e~i~~~Lt~~g~~~~~i~~~nP~~~~g~fy~~~~~ 243 (511)
+++.... +..++++.+|. +..++++||++++++ ++|.++.++++..+.. +++.+|+|++.. .||+.+..
T Consensus 255 Ngs~i~~----~a~~~da~RG~---s~~~l~lDE~Afi~~~~e~~~~~~~~l~~g~~~-kiii~STpnG~n-~fy~~~~~ 325 (592)
T 3cpe_A 255 NGSSIGA----YASSPDAVRGN---SFAMIYIEDCAFIPNFHDSWLAIQPVISSGRRS-KIIITTTPNGLN-HFYDIWTA 325 (592)
T ss_dssp TSCEEEE----EECCHHHHHHS---CCSEEEEETGGGCTTHHHHHHHHHHHHSSSSCC-EEEEEECCCTTS-HHHHHHHH
T ss_pred CCCEEEE----ECCCCCCCCCC---CCCCEEEEHHHHCCHHHHHHHHHCCCCCCCCCC-EEEEECCCCCCC-CCHHHHHH
T ss_conf 8725875----04788666677---666327531320406888875302334368873-699977998876-32789988
Q ss_pred ---CCCCCEEEEECCCCCCCC--------CHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCEEECHHHHHHHHHCC---
Q ss_conf ---524741798404336778--------977899999751898013544431756666787375599998864076---
Q gi|254781215|r 244 ---PLDDWKRFQIDTRTVEGI--------DPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNRE--- 309 (511)
Q Consensus 244 ---~~~~w~~~~i~~~~~p~~--------~~~~ie~~~~~~geds~~~r~evlgeFp~~~~~~~i~~~~ie~a~~r~--- 309 (511)
....|..+.+.|...|.. +..|.....+..+.....|++|++|+|..++.. +|+.+.+..+....
T Consensus 326 a~~g~~~~~~~~~~w~~~per~~~d~~~~~~~~~w~~e~i~~~s~~~F~QEy~~eF~~s~~~-vf~~~~l~~~~~~~~~~ 404 (592)
T 3cpe_A 326 AVEGKSGFEPYTAIWNSVKERLYNDEDIFDDGWQWSIQTINGSSLAQFRQEHTAAFEGTSGT-LISGMKLAVMDFIEVTP 404 (592)
T ss_dssp HHTTCSSCEEEEECGGGSGGGGBCTTSBBCTTHHHHHHHHTTSCHHHHHHHHSCCCTTSCSB-SSCHHHHTTCCCCCCCC
T ss_pred HHHCCCCCCCEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCH-HHHHHHHHHHCCCCCCC
T ss_conf 74077766741234345776335542100043799999874577555301434332345430-56778987620222203
Q ss_pred --------CCCCCCCEEEEEEECCCC-CCCCEEEEEEC--CC--EEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf --------531899708999623334-78417999822--75--589987327789889999999999861888299800
Q gi|254781215|r 310 --------PCPDPYAPLIMGCDIAEE-GGDNTVVVLRR--GP--VIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDA 376 (511)
Q Consensus 310 --------~~~~~~~~~viGvDVAr~-G~D~svi~~r~--G~--~v~~~~~~~~~d~~~~a~~i~~~~~~~~~~~i~iD~ 376 (511)
..+.++..+++|+|||++ |+|.+++.+-. +. .+......++.++..++..|..++..|+++.|+||.
T Consensus 405 ~~~~~~iye~p~~~~~YvigvDvA~G~~~DySai~Vidv~~~~~eqVa~~~~n~i~~~~~a~~I~~l~~~YN~a~V~VE~ 484 (592)
T 3cpe_A 405 DDHGFHQFKKPEPDRKYIATLDCSEGRGQDYHALHIIDVTDDVWEQVGVLHSNTISHLILPDIVMRYLVEYNECPVYIEL 484 (592)
T ss_dssp CSSSEEESSCCCTTCCEEEEEECCSSBTTBCEEEEEEECSSSSEEEEEEEEESSSCTTTHHHHHHHHHHHTTSCCEEEEE
T ss_pred CCCCEEEEECCCCCCCEEEEEECCCCCCCCCEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 47781332446766602688512445777732799941478761899998358889899999999999972884899997
Q ss_pred CCCCHHHHHHHH-HCCCE-EEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHCCCEEEECCCCEE
Q ss_conf 687636889898-64982-798427777664025522799999999999970899-981899999857967998799849
Q gi|254781215|r 377 NNTGARTCDYLE-MLGYH-VYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASL-INHSGLIQNLKSLKSFIVPNTGEL 453 (511)
Q Consensus 377 ~GvG~gV~d~L~-~~g~~-v~~v~~~~~~~~~~~y~N~rae~~~~~re~l~~g~l-~~d~~l~~el~~~~~~~~~~~gki 453 (511)
+|+|.+|++.|. ++++. +..-....... ..-...|..++-+|+++|+.+.+ +++..|++||.+-. . .+|+.
T Consensus 485 N~~G~~Vi~~L~~dl~y~nl~~~~~~~~Gf--~tT~ksK~~~is~Lk~liE~~~i~i~~~~li~EL~tFv---~-~~~~~ 558 (592)
T 3cpe_A 485 NSTGVSVAKSLYMDLEYEGVICDSYTDLGM--KQTKRTKAVGCSTLKDLIEKDKLIIHHRATIQEFRTFS---E-KGVSW 558 (592)
T ss_dssp SHHHHHHHHHHHTTSCCSCEECSSSSCSSE--ECCHHHHHHHHHHHHHHHHTTSEECCCHHHHHHHTSEE---E-ETTEE
T ss_pred CCCHHHHHHHHHHHHCCCCCCCCCCCCCCC--CCCCCCHHHHHHHHHHHHHCCCEEECCHHHHHHHHHHH---H-CCCEE
T ss_conf 984999999998874557514677677787--57845599999999999974986989888999999986---4-49751
Q ss_pred EEEECHHHCCCCCCHHHHHHHHH
Q ss_conf 99841254899989899999997
Q gi|254781215|r 454 AIESKRVKGAKSTDYSDGLMYTF 476 (511)
Q Consensus 454 ~ie~Kkkrg~~SPD~ADAl~l~f 476 (511)
.-. -|.+=|+..||+|+.
T Consensus 559 ~A~-----~G~HDDlVmalala~ 576 (592)
T 3cpe_A 559 AAE-----EGYHDDLVMSLVIFG 576 (592)
T ss_dssp EEC-----TTCCCHHHHHHHHHH
T ss_pred CCC-----CCCCHHHHHHHHHHH
T ss_conf 478-----999779999999999