HHsearch results for GI: 254781215 and protein with PDBid: 3h1t_A

>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=98.69  E-value=1.5e-06  Score=58.50  Aligned_cols=179  Identities=17%  Similarity=0.110  Sum_probs=91.1

Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf             66528866776421455777565557845899999999999874056555421012465025765978999999999998
Q gi|254781215|r   24 IKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMS  103 (511)
Q Consensus        24 ~~~~~~~~~~~~~~w~~~~~~~~~~~~P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~  103 (511)
                      ..+..+.+.+.-|       .......||.||.++++.+.++..++..       |..|....|+|||.++..++...+.
T Consensus       159 ~~~~~~~~~~~~~-------~~~~~~~~R~yQ~~Ai~~~~~~~~~~~~-------r~li~~aTGSGKT~~a~~li~~ll~  224 (590)
T 3h1t_A          159 IKDEDLDTLLSPY-------HHVSGYSPRYYQQIAINRAVQSVLQGKK-------RSLITMATGTGKTVVAFQISWKLWS  224 (590)
T ss_dssp             CCGGGHHHHTCCC-------CCC----CCHHHHHHHHHHHHHHHTTCS-------EEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCC-------CCCCCCCCCHHHHHHHHHHHHHHHHCCC-------CEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf             4667776541555-------4457998679999999999999983799-------6599889999789999999999998


Q ss_pred             HC-------CCCEEEEEECCHHHHHHHHHHHHHHHHHHCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCC
Q ss_conf             08-------99669998085899999999999999985500013444322222233344432111235786169853035
Q gi|254781215|r  104 TR-------PGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTY  176 (511)
Q Consensus       104 ~~-------p~~kv~vtApt~~Q~~~ilw~Ei~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (511)
                      .+       ...++++.+|+..-+.+.        ......  .+......+..         ..........+.+..+.
T Consensus       225 ~~~~~~~~~~~~rvl~l~dr~~L~~Q~--------~~~~~~--~~~~~~~~i~~---------~~~~~~~~~~~~t~q~l  285 (590)
T 3h1t_A          225 ARWNRTGDYRKPRILFLADRNVLVDDP--------KDKTFT--PFGDARHKIEG---------GKVVKSREIYFAIYQSI  285 (590)
T ss_dssp             TTCCSSCSSSCCCEEEEEC-------------------CCT--TTCSSEEECCC-----------CCSSCSEEEEEGGGC
T ss_pred             HCCCCCCCCCCCEEEEEECHHHHHHHH--------HHHHHH--HCCCCCEEEEC---------CCCCCCCCEEEEEEEEE
T ss_conf             411322345688699995369999989--------999974--13665402211---------44235663157766672


Q ss_pred             CC--CCCCHHHHCCCCCCEEEEECCHHCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCC
Q ss_conf             75--561002120267614999711102997889888888507998138998238998765
Q gi|254781215|r  177 SE--ERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSG  235 (511)
Q Consensus       177 s~--~~~ea~~G~h~~~~~lvI~DEAsgI~d~i~e~i~~~Lt~~g~~~~~i~~~nP~~~~g  235 (511)
                      ..  ..+....-+-.....++|+|||+-....-.......+....+..++-.+++|.+..+
T Consensus       286 ~~~~~~~~~~~~~~~~~~~lIIiDEaHr~~~~~~~~~~~il~~~~~a~~lGlTATP~~~~~  346 (590)
T 3h1t_A          286 ASDERRPGLYKEFPQDFFDLIIIDECHRGSARDNSNWREILEYFEPAFQIGMTATPLREDN  346 (590)
T ss_dssp             ------CCGGGGSCTTSCSEEEESCCC---------CHHHHHHSTTSEEEEEESSCSCTTT
T ss_pred             HHHHHCHHHHHHCCCCCCEEEEEEHHHHHCCCCCHHHHHHHHHHHHHHEEECCCCCCCCCC
T ss_conf             0222011356542755516999604774032321157788876434451322446522367