HHsearch results for GI: 254781215 and protein with PDBid: 3iuy_A
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomics consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=97.41 E-value=0.001 Score=40.69 Aligned_cols=71 Identities=21% Similarity=0.200 Sum_probs=51.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHH-------CCCCEEEEEECCHHH
Q ss_conf 5578458999999999998740565554210124650257659789999999999980-------899669998085899
Q gi|254781215|r 47 GFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMST-------RPGISVICLANSETQ 119 (511)
Q Consensus 47 ~~~~P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~-------~p~~kv~vtApt~~Q 119 (511)
+|..|-+-|++.+..+-.. . -+.|.|..|+|||.....-++..+.. ..+.++++.+||..-
T Consensus 39 g~~~pt~iQ~~aip~il~g----~--------dviv~a~TGsGKTlay~lp~l~~~~~~~~~~~~~~~~~alil~PtreL 106 (228)
T 3iuy_A 39 GILKPTPIQSQAWPIILQG----I--------DLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTREL 106 (228)
T ss_dssp TCCSCCHHHHHHHHHHHTT----C--------CEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHH
T ss_pred CCCCCCHHHHHHHHHHHCC----C--------CEEEECCCCCCCCCHHHHHHHHHHHHCCCCHHCCCCCEEEEECCCHHH
T ss_conf 9999999999999999679----9--------889987899986366553289987620000001578549998285889
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999999
Q gi|254781215|r 120 LKTTLWAEVSK 130 (511)
Q Consensus 120 ~~~ilw~Ei~k 130 (511)
+..+. .++.+
T Consensus 107 a~qi~-~~~~~ 116 (228)
T 3iuy_A 107 ALHVE-AECSK 116 (228)
T ss_dssp HHHHH-HHHHH
T ss_pred HHHHH-HHHHH
T ss_conf 99999-99998