HHsearch results for GI: 254781215 and protein with PDBid: 3l9o_A

>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=98.22  E-value=1.4e-05  Score=52.40  Aligned_cols=68  Identities=15%  Similarity=0.138  Sum_probs=47.8

Q ss_pred             CCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH
Q ss_conf             84589999999999987405655542101246502576597899999999999808996699980858999999999999
Q gi|254781215|r   50 APRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVS  129 (511)
Q Consensus        50 ~P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~~Q~~~ilw~Ei~  129 (511)
                      .|++||++++..+-.    +.        -+-|.+..|.|||.++...++-.+.  .+.++++++||..=+.++ +.++.
T Consensus       184 ~l~~~Q~~ai~~i~~----g~--------dvlv~ApTGSGKTlv~~l~i~~~l~--~~~r~l~l~Ptr~La~Q~-~~~l~  248 (1108)
T 3l9o_A          184 TLDPFQDTAISCIDR----GE--------SVLVSAHTSAGKTVVAEYAIAQSLK--NKQRVIYTSPIKALSNQK-YRELL  248 (1108)
T ss_dssp             CCCHHHHHHHHHHTT----TC--------CEEEECCSSSHHHHHHHHHHHHHHH--TTCEEEEEESSHHHHHHH-HHHHH
T ss_pred             CCCHHHHHHHHHHHH----CC--------CEEEECCCCCHHHHHHHHHHHHHHH--HCCEEEEECCHHHHHHHH-HHHHH
T ss_conf             989999999999981----99--------9999808986599999999999996--199099988979999999-99999


Q ss_pred             HHH
Q ss_conf             999
Q gi|254781215|r  130 KWL  132 (511)
Q Consensus       130 k~~  132 (511)
                      +..
T Consensus       249 ~~~  251 (1108)
T 3l9o_A          249 AEF  251 (1108)
T ss_dssp             HHT
T ss_pred             HHC
T ss_conf             745