HHsearch results for GI: 254781215 and protein with PDBid: 3ly5_A
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=97.29 E-value=0.0014 Score=39.76 Aligned_cols=74 Identities=18% Similarity=0.159 Sum_probs=54.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCC-----CCEEEEEECCHHHHH
Q ss_conf 557845899999999999874056555421012465025765978999999999998089-----966999808589999
Q gi|254781215|r 47 GFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRP-----GISVICLANSETQLK 121 (511)
Q Consensus 47 ~~~~P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p-----~~kv~vtApt~~Q~~ 121 (511)
+|..|.+-|++++..+-.. + -+.|.|..|+|||.....-++-.+.... ...+++.+||...+.
T Consensus 73 Gf~~ptpiQ~~aIp~il~g------~------dviv~A~TGSGKTlay~lpil~~~~~~~~~~~~~~~~li~~pt~el~~ 140 (262)
T 3ly5_A 73 GFTNMTEIQHKSIRPLLEG------R------DLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAM 140 (262)
T ss_dssp TCCBCCHHHHHHHHHHHHT------C------CCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHH
T ss_pred CCCCCCHHHHHHHHHHHCC------C------CEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHH
T ss_conf 9999999999999999869------9------966788999981799999999877651245656846999563577667
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999998
Q gi|254781215|r 122 TTLWAEVSKWLS 133 (511)
Q Consensus 122 ~ilw~Ei~k~~~ 133 (511)
.+ +..+.+...
T Consensus 141 q~-~~~~~~l~~ 151 (262)
T 3ly5_A 141 QT-FGVLKELMT 151 (262)
T ss_dssp HH-HHHHHHHTT
T ss_pred HH-HHHHHHHHH
T ss_conf 78-999999743