Query gi|254781215|ref|YP_003065628.1| putative phage terminase, large subunit [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 511
No_of_seqs 218 out of 401
Neff 7.5
Searched_HMMs 23785
Date Wed Jun 1 02:13:35 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781215.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cpe_A Terminase, DNA packagin 100.0 2.7E-42 0 284.0 40.2 419 6-476 126-576 (592)
2 2o0j_A Terminase, DNA packagin 100.0 2.5E-26 1.1E-30 183.2 25.3 243 6-292 126-385 (385)
3 3c6a_A Terminase large subunit 99.2 5.4E-10 2.3E-14 80.3 13.5 156 307-475 50-215 (232)
4 1rif_A DAR protein, DNA helica 98.8 9.2E-07 3.9E-11 59.9 17.6 157 50-237 113-269 (282)
5 3h1t_A Type I site-specific re 98.7 1.5E-06 6.4E-11 58.5 15.3 179 24-235 159-346 (590)
6 2oca_A DAR protein, ATP-depend 98.5 1.8E-05 7.4E-10 51.8 16.9 156 50-236 113-268 (510)
7 2fz4_A DNA repair protein RAD2 98.4 1.9E-06 8.1E-11 57.9 10.2 142 49-235 92-233 (237)
8 1wp9_A ATP-dependent RNA helic 98.4 1.2E-06 4.9E-11 59.3 8.8 171 47-242 6-178 (494)
9 2xgj_A ATP-dependent RNA helic 98.3 1.8E-05 7.7E-10 51.7 12.7 68 50-132 86-153 (1010)
10 3l9o_A ATP-dependent RNA helic 98.2 1.4E-05 5.9E-10 52.4 10.5 68 50-132 184-251 (1108)
11 2zpa_A Uncharacterized protein 98.2 1.4E-05 5.9E-10 52.4 10.1 154 51-272 176-332 (671)
12 3dkp_A Probable ATP-dependent 98.1 2.1E-05 8.7E-10 51.4 10.0 74 47-133 48-123 (245)
13 2zj8_A DNA helicase, putative 98.1 1.2E-05 5E-10 52.9 7.6 64 47-122 20-83 (720)
14 2fwr_A DNA repair protein RAD2 98.1 0.00012 4.9E-09 46.6 12.3 142 50-236 93-234 (472)
15 2va8_A SSO2462, SKI2-type heli 98.0 1.1E-05 4.7E-10 53.0 6.8 64 47-122 27-90 (715)
16 2p6r_A Afuhel308 helicase; pro 98.0 2.8E-05 1.2E-09 50.6 8.7 62 47-122 22-83 (702)
17 1z63_A Helicase of the SNF2/RA 97.9 0.00026 1.1E-08 44.4 12.4 153 51-234 38-191 (500)
18 3b6e_A Interferon-induced heli 97.9 6.9E-06 2.9E-10 54.3 4.2 70 51-133 34-107 (216)
19 3e1s_A Exodeoxyribonuclease V, 97.9 6.7E-05 2.8E-09 48.1 9.2 139 50-242 189-332 (574)
20 1w36_D RECD, exodeoxyribonucle 97.9 0.00078 3.3E-08 41.4 13.8 147 51-230 150-298 (608)
21 3ber_A Probable ATP-dependent 97.9 0.00013 5.6E-09 46.2 9.9 78 46-136 61-139 (249)
22 3dmq_A RNA polymerase-associat 97.9 0.00029 1.2E-08 44.1 11.5 160 50-233 153-319 (968)
23 2db3_A ATP-dependent RNA helic 97.8 0.00022 9.2E-09 44.9 10.5 74 46-132 74-153 (434)
24 3b85_A Phosphate starvation-in 97.8 0.00011 4.6E-09 46.8 8.4 144 53-232 10-160 (208)
25 1hv8_A Putative ATP-dependent 97.8 0.00022 9.3E-09 44.9 9.8 75 47-133 25-99 (367)
26 3eiq_A Eukaryotic initiation f 97.7 0.00018 7.6E-09 45.4 8.7 75 46-133 58-133 (414)
27 3i5x_A ATP-dependent RNA helic 97.7 0.00037 1.6E-08 43.4 9.9 78 47-135 91-173 (563)
28 2vl7_A XPD; helicase, unknown 97.6 0.00026 1.1E-08 44.4 8.6 66 51-130 8-73 (540)
29 2z0m_A 337AA long hypothetical 97.6 0.00021 9E-09 45.0 8.1 70 47-134 13-82 (337)
30 2gxq_A Heat resistant RNA depe 97.6 0.00024 1E-08 44.6 7.4 72 47-131 20-95 (207)
31 3mwy_W Chromo domain-containin 97.5 0.00054 2.3E-08 42.4 8.8 167 51-235 237-410 (800)
32 1wrb_A DJVLGB; RNA helicase, D 97.5 0.0011 4.7E-08 40.4 10.4 89 34-135 29-127 (253)
33 2j0s_A ATP-dependent RNA helic 97.5 0.00035 1.5E-08 43.6 7.6 73 47-132 56-129 (410)
34 2oxc_A Probable ATP-dependent 97.5 0.00093 3.9E-08 40.9 9.5 74 46-132 42-116 (230)
35 3fmo_B ATP-dependent RNA helic 97.5 0.0027 1.1E-07 38.0 11.8 67 47-123 111-178 (300)
36 2pl3_A Probable ATP-dependent 97.5 0.00088 3.7E-08 41.1 9.3 73 47-132 44-121 (236)
37 1z3i_X Similar to RAD54-like; 97.5 0.0044 1.8E-07 36.7 12.8 168 52-234 57-234 (644)
38 3iuy_A Probable ATP-dependent 97.4 0.001 4.3E-08 40.7 9.0 71 47-130 39-116 (228)
39 2w00_A HSDR, R.ECOR124I; ATP-b 97.3 0.0031 1.3E-07 37.7 10.7 169 48-233 269-441 (1038)
40 3crv_A XPD/RAD3 related DNA he 97.3 0.0011 4.8E-08 40.3 8.3 68 50-131 3-70 (551)
41 3ly5_A ATP-dependent RNA helic 97.3 0.0014 6E-08 39.8 8.6 74 47-133 73-151 (262)
42 1t6n_A Probable ATP-dependent 97.2 0.0015 6.2E-08 39.7 7.9 75 47-134 33-108 (220)
43 1q0u_A Bstdead; DEAD protein, 97.2 0.0028 1.2E-07 37.9 9.1 65 47-123 23-88 (219)
44 1sxj_C Activator 1 40 kDa subu 97.2 0.0033 1.4E-07 37.4 9.4 138 34-231 11-150 (340)
45 1vec_A ATP-dependent RNA helic 97.1 0.0019 7.9E-08 39.0 8.0 70 47-129 22-92 (206)
46 3llm_A ATP-dependent RNA helic 97.1 0.013 5.3E-07 33.8 13.4 164 44-242 59-228 (235)
47 2i4i_A ATP-dependent RNA helic 97.1 0.0037 1.6E-07 37.1 9.1 76 47-135 34-128 (417)
48 1a5t_A Delta prime, HOLB; zinc 97.0 0.006 2.5E-07 35.8 9.4 149 53-236 5-154 (334)
49 1oyw_A RECQ helicase, ATP-depe 97.0 0.0049 2.1E-07 36.3 9.0 61 47-124 22-82 (523)
50 2eyq_A TRCF, transcription-rep 97.0 0.016 6.8E-07 33.1 13.6 157 55-234 608-765 (1151)
51 1qde_A EIF4A, translation init 97.0 0.0043 1.8E-07 36.8 8.5 65 47-123 33-98 (224)
52 3bor_A Human initiation factor 97.0 0.0032 1.4E-07 37.5 7.7 72 47-131 49-121 (237)
53 1gm5_A RECG; helicase, replica 96.9 0.015 6.4E-07 33.3 10.5 75 53-136 371-445 (780)
54 1s2m_A Putative ATP-dependent 96.8 0.021 8.8E-07 32.4 10.8 66 46-123 39-105 (400)
55 3fe2_A Probable ATP-dependent 96.8 0.016 6.7E-07 33.1 10.1 76 46-134 47-128 (242)
56 1sxj_B Activator 1 37 kDa subu 96.7 0.0084 3.5E-07 34.9 8.2 135 37-230 10-146 (323)
57 2z83_A Helicase/nucleoside tri 96.7 0.0081 3.4E-07 35.0 8.0 136 80-238 24-161 (459)
58 2jlq_A Serine protease subunit 96.6 0.014 5.7E-07 33.6 8.9 44 79-123 21-64 (451)
59 2v6i_A RNA helicase; membrane, 96.6 0.015 6.3E-07 33.3 8.9 135 81-238 6-142 (431)
60 1sxj_D Activator 1 41 kDa subu 96.6 0.014 5.8E-07 33.5 8.5 143 37-230 26-172 (353)
61 3fmp_B ATP-dependent RNA helic 96.5 0.035 1.5E-06 31.0 11.6 77 47-134 111-188 (479)
62 1yks_A Genome polyprotein [con 96.5 0.021 9E-07 32.3 9.2 44 79-123 10-53 (440)
63 2kbe_A ATP-dependent RNA helic 96.5 0.021 8.9E-07 32.4 9.1 68 47-124 41-109 (226)
64 1sxj_E Activator 1 40 kDa subu 96.5 0.0061 2.6E-07 35.8 6.3 75 185-272 129-204 (354)
65 2gk6_A Regulator of nonsense t 96.5 0.0087 3.7E-07 34.8 7.0 60 52-124 182-241 (624)
66 2wbn_A G2P, terminase large su 96.4 0.04 1.7E-06 30.6 10.2 151 315-486 48-209 (212)
67 2wv9_A Flavivirin protease NS2 96.4 0.028 1.2E-06 31.6 9.2 42 81-123 245-286 (673)
68 2v1x_A ATP-dependent DNA helic 96.4 0.0039 1.6E-07 37.0 4.9 72 35-123 25-100 (591)
69 3fht_A ATP-dependent RNA helic 96.3 0.0091 3.8E-07 34.7 6.4 68 46-123 43-111 (412)
70 2whx_A Serine protease/ntpase/ 96.2 0.031 1.3E-06 31.3 8.7 43 79-122 188-230 (618)
71 3kqn_A Serine protease/ntpase/ 96.0 0.066 2.8E-06 29.2 9.8 47 79-131 10-57 (437)
72 1fuu_A Yeast initiation factor 96.0 0.026 1.1E-06 31.8 7.3 65 47-123 40-105 (394)
73 2wjy_A Regulator of nonsense t 95.9 0.025 1.1E-06 31.9 7.1 60 52-124 358-417 (800)
74 2chg_A Replication factor C sm 95.8 0.081 3.4E-06 28.7 12.4 128 42-230 13-141 (226)
75 1iqp_A RFCS; clamp loader, ext 95.7 0.087 3.6E-06 28.5 12.1 128 42-230 21-149 (327)
76 2px0_A Flagellar biosynthesis 95.6 0.078 3.3E-06 28.8 8.6 102 9-117 39-145 (296)
77 1xti_A Probable ATP-dependent 95.5 0.031 1.3E-06 31.4 6.3 72 47-131 27-99 (391)
78 2chq_A Replication factor C sm 95.3 0.04 1.7E-06 30.6 6.2 135 38-232 7-143 (319)
79 1jr3_A DNA polymerase III subu 95.2 0.13 5.4E-06 27.4 10.9 150 42-233 12-162 (373)
80 2vsf_A XPD, DNA repair helicas 94.6 0.027 1.1E-06 31.7 3.8 54 79-134 6-59 (602)
81 1njg_A DNA polymerase III subu 93.9 0.26 1.1E-05 25.5 11.9 38 193-230 128-165 (250)
82 2ph1_A Nucleotide-binding prot 93.9 0.081 3.4E-06 28.7 5.0 34 78-113 19-53 (262)
83 3cio_A ETK, tyrosine-protein k 92.9 0.39 1.6E-05 24.4 7.2 61 49-113 78-139 (299)
84 2xau_A PRE-mRNA-splicing facto 92.7 0.42 1.7E-05 24.2 7.5 157 55-242 99-260 (773)
85 2qgz_A Helicase loader, putati 92.5 0.44 1.8E-05 24.1 8.7 70 43-115 121-190 (308)
86 3la6_A Tyrosine-protein kinase 92.3 0.46 1.9E-05 23.9 7.1 62 49-114 66-128 (286)
87 1pjr_A PCRA; DNA repair, DNA r 92.3 0.28 1.2E-05 25.3 5.8 43 80-122 27-71 (724)
88 1wcv_1 SOJ, segregation protei 92.2 0.12 5.2E-06 27.5 4.0 39 76-116 5-45 (257)
89 3io3_A DEHA2D07832P; chaperone 92.2 0.24 1E-05 25.7 5.4 37 78-114 18-55 (348)
90 1g3q_A MIND ATPase, cell divis 92.1 0.19 8.2E-06 26.3 4.8 33 79-113 4-37 (237)
91 1cu1_A Protein (protease/helic 91.7 0.54 2.3E-05 23.5 11.1 127 78-233 211-342 (645)
92 1uaa_A REP helicase, protein ( 91.7 0.18 7.6E-06 26.5 4.3 43 79-121 17-61 (673)
93 3b9q_A Chloroplast SRP recepto 91.2 0.61 2.6E-05 23.2 6.7 38 79-117 102-139 (302)
94 3bfv_A CAPA1, CAPB2, membrane 91.0 0.64 2.7E-05 23.0 7.1 62 49-114 56-118 (271)
95 1odf_A YGR205W, hypothetical 3 90.7 0.34 1.4E-05 24.8 4.9 57 54-113 11-68 (290)
96 3cwq_A Para family chromosome 90.6 0.32 1.3E-05 24.9 4.6 35 80-117 3-39 (209)
97 1hyq_A MIND, cell division inh 90.4 0.37 1.6E-05 24.5 4.9 33 79-113 4-37 (263)
98 3ice_A Transcription terminati 89.9 0.56 2.4E-05 23.4 5.5 35 79-113 176-210 (422)
99 2is6_A DNA helicase II; hydrol 89.9 0.74 3.1E-05 22.6 6.0 44 79-122 24-69 (680)
100 2gno_A DNA polymerase III, gam 89.8 0.8 3.4E-05 22.4 11.4 116 55-237 5-129 (305)
101 3k9g_A PF-32 protein; ssgcid, 89.7 0.33 1.4E-05 24.9 4.2 32 80-114 30-62 (267)
102 2afh_E Nitrogenase iron protei 89.5 0.41 1.7E-05 24.2 4.5 36 76-113 1-36 (289)
103 1e2k_A Thymidine kinase; trans 89.2 0.22 9.2E-06 26.0 2.9 27 74-100 1-27 (331)
104 2qy9_A Cell division protein F 89.1 0.91 3.8E-05 22.1 10.3 119 8-134 30-152 (309)
105 2woj_A ATPase GET3; tail-ancho 89.0 0.69 2.9E-05 22.8 5.4 36 79-114 19-55 (354)
106 1ihu_A Arsenical pump-driving 88.9 0.53 2.2E-05 23.5 4.7 35 78-114 8-43 (589)
107 3aez_A Pantothenate kinase; tr 88.6 0.75 3.1E-05 22.6 5.3 38 76-113 89-126 (312)
108 1p6x_A Thymidine kinase; P-loo 88.3 0.31 1.3E-05 25.0 3.2 29 72-100 2-30 (334)
109 3fkq_A NTRC-like two-domain pr 88.0 1.1 4.5E-05 21.6 7.5 32 80-113 146-178 (373)
110 1sky_E F1-ATPase, F1-ATP synth 88.0 0.96 4E-05 21.9 5.6 44 77-120 151-195 (473)
111 2z4s_A Chromosomal replication 87.8 1.1 4.6E-05 21.5 13.6 54 54-115 115-168 (440)
112 3kjh_A CO dehydrogenase/acetyl 87.7 0.41 1.7E-05 24.3 3.5 33 79-113 2-34 (254)
113 3ec2_A DNA replication protein 87.6 1.1 4.7E-05 21.5 7.3 68 44-114 8-75 (180)
114 1cp2_A CP2, nitrogenase iron p 87.6 0.84 3.5E-05 22.3 5.1 35 77-113 1-35 (269)
115 1vma_A Cell division protein F 87.3 1.2 5E-05 21.3 6.8 41 78-119 105-145 (306)
116 3l0o_A Transcription terminati 86.9 1.2 5.1E-05 21.3 5.5 34 392-425 359-392 (427)
117 1of1_A Thymidine kinase; trans 85.4 0.54 2.3E-05 23.5 3.1 27 73-99 45-71 (376)
118 3ea0_A ATPase, para family; al 84.6 0.99 4.2E-05 21.8 4.2 34 79-113 6-40 (245)
119 1zu4_A FTSY; GTPase, signal re 84.5 1.3 5.6E-05 21.0 4.8 41 79-120 107-147 (320)
120 1sq5_A Pantothenate kinase; P- 84.2 1.7 7E-05 20.4 6.9 36 78-113 81-116 (308)
121 1lw7_A Transcriptional regulat 84.2 0.48 2E-05 23.8 2.4 24 353-376 304-327 (365)
122 1rj9_A FTSY, signal recognitio 84.1 1.1 4.4E-05 21.7 4.1 47 79-128 104-155 (304)
123 3c8u_A Fructokinase; YP_612366 83.9 1.7 7.3E-05 20.3 6.3 36 78-113 23-58 (208)
124 1hqc_A RUVB; extended AAA-ATPa 83.3 0.95 4E-05 21.9 3.6 53 43-100 9-61 (324)
125 2qm8_A GTPase/ATPase; G protei 83.2 1.8 7.7E-05 20.1 8.0 55 56-116 38-92 (337)
126 2qen_A Walker-type ATPase; unk 83.1 1.9 7.8E-05 20.1 5.1 43 44-98 10-52 (350)
127 2gza_A Type IV secretion syste 82.7 1.6 6.9E-05 20.4 4.7 28 361-389 245-272 (361)
128 3pfi_A Holliday junction ATP-d 82.3 1.6 6.8E-05 20.5 4.5 52 42-100 25-78 (338)
129 1fx0_B ATP synthase beta chain 82.1 1.3 5.3E-05 21.2 3.9 36 78-113 166-201 (498)
130 3igf_A ALL4481 protein; two-do 81.9 0.86 3.6E-05 22.2 3.0 40 79-120 3-43 (374)
131 2qby_B CDC6 homolog 3, cell di 81.8 2.1 8.7E-05 19.8 7.3 46 55-102 25-70 (384)
132 2www_A Methylmalonic aciduria 81.5 2.1 9E-05 19.7 7.5 63 55-119 46-114 (349)
133 2woo_A ATPase GET3; tail-ancho 81.4 1.9 7.8E-05 20.1 4.5 35 78-114 19-54 (329)
134 2w58_A DNAI, primosome compone 80.7 2.3 9.5E-05 19.6 7.8 64 46-113 25-88 (202)
135 3iqw_A Tail-anchored protein t 80.7 2.2 9.3E-05 19.6 4.7 35 78-114 17-51 (334)
136 1in4_A RUVB, holliday junction 80.6 2 8.6E-05 19.9 4.5 52 42-100 21-74 (334)
137 1qvr_A CLPB protein; coiled co 80.6 2.2 9.2E-05 19.7 4.7 36 81-116 195-235 (854)
138 2oze_A ORF delta'; para, walke 80.0 1.6 6.9E-05 20.5 3.9 35 77-113 36-71 (298)
139 1c4o_A DNA nucleotide excision 79.7 2.4 0.0001 19.4 9.0 66 55-133 13-78 (664)
140 3ez9_A Para; DNA binding, wing 78.9 1.4 5.7E-05 21.0 3.2 57 57-113 90-152 (403)
141 1ye8_A Protein THEP1, hypothet 78.8 1.2 5.2E-05 21.3 2.9 33 79-113 2-34 (178)
142 1xtq_A GTP-binding protein RHE 78.2 1.5 6.2E-05 20.8 3.2 25 74-98 3-27 (177)
143 2qh9_A UPF0215 protein AF_1433 77.9 2.8 0.00012 19.0 6.8 133 318-477 8-156 (184)
144 2ck3_A ATP synthase alpha chai 77.8 2 8.5E-05 19.9 3.8 29 78-106 163-191 (510)
145 1y63_A LMAJ004144AAA protein; 77.7 1.6 6.6E-05 20.6 3.2 29 72-100 5-33 (184)
146 3lw7_A Adenylate kinase relate 77.6 1.4 6E-05 20.8 3.0 32 77-114 1-32 (179)
147 3oes_A GTPase rhebl1; small GT 77.4 1.5 6.4E-05 20.7 3.1 27 72-98 19-45 (201)
148 1uj2_A Uridine-cytidine kinase 77.3 1.7 7E-05 20.4 3.2 24 78-101 23-46 (252)
149 2if2_A Dephospho-COA kinase; a 77.3 1.3 5.5E-05 21.1 2.7 30 77-112 1-30 (204)
150 1mh1_A RAC1; GTP-binding, GTPa 77.2 1.6 6.7E-05 20.5 3.1 24 75-98 3-26 (186)
151 2j0v_A RAC-like GTP-binding pr 76.0 2.2 9.3E-05 19.6 3.6 28 72-99 4-31 (212)
152 3h4m_A Proteasome-activating n 75.9 2.8 0.00012 19.0 4.1 65 46-116 17-85 (285)
153 2qz4_A Paraplegin; AAA+, SPG7, 75.7 3.2 0.00013 18.6 5.3 47 55-101 14-63 (262)
154 2erx_A GTP-binding protein DI- 75.5 1.8 7.7E-05 20.2 3.1 21 78-98 4-24 (172)
155 1zuh_A Shikimate kinase; alpha 75.5 1.7 7.3E-05 20.3 2.9 29 73-101 3-31 (168)
156 1w36_B RECB, exodeoxyribonucle 75.4 3.2 0.00014 18.6 6.7 25 80-104 19-43 (1180)
157 2jeo_A Uridine-cytidine kinase 75.0 1.7 7.1E-05 20.4 2.8 25 78-102 26-50 (245)
158 1xjc_A MOBB protein homolog; s 74.7 3.4 0.00014 18.5 4.6 40 78-119 5-44 (169)
159 1j8m_F SRP54, signal recogniti 74.6 3.4 0.00014 18.5 11.5 92 23-119 44-139 (297)
160 2qe7_A ATP synthase subunit al 74.5 2.8 0.00012 19.0 3.8 25 77-101 162-186 (502)
161 2p5t_B PEZT; postsegregational 74.5 3.4 0.00014 18.4 5.8 48 51-100 8-55 (253)
162 1d2n_A N-ethylmaleimide-sensit 74.4 3.4 0.00014 18.4 4.5 23 78-100 65-87 (272)
163 1vg8_A RAS-related protein RAB 74.2 2.1 8.7E-05 19.8 3.1 22 77-98 8-29 (207)
164 2oap_1 GSPE-2, type II secreti 74.2 3.5 0.00015 18.4 5.4 15 202-216 244-258 (511)
165 3p32_A Probable GTPase RV1496/ 74.1 3.5 0.00015 18.4 7.7 42 77-118 79-120 (355)
166 1g16_A RAS-related protein SEC 73.9 2.1 8.9E-05 19.7 3.1 23 76-98 2-24 (170)
167 1wms_A RAB-9, RAB9, RAS-relate 73.8 2.2 9.5E-05 19.6 3.2 25 74-98 4-28 (177)
168 2ck3_D ATP synthase beta chain 73.7 3 0.00013 18.8 3.8 24 77-100 153-176 (482)
169 3kl4_A SRP54, signal recogniti 73.5 3.6 0.00015 18.3 11.8 93 23-120 43-139 (433)
170 1byi_A Dethiobiotin synthase; 73.4 3.6 0.00015 18.3 5.0 35 79-115 3-38 (224)
171 1rz3_A Hypothetical protein rb 73.4 3.6 0.00015 18.3 7.5 52 57-111 5-56 (201)
172 3ch4_B Pmkase, phosphomevalona 73.3 2.6 0.00011 19.2 3.4 21 80-100 14-34 (202)
173 2pt7_A CAG-ALFA; ATPase, prote 73.0 3.7 0.00016 18.2 5.1 28 362-390 234-261 (330)
174 3clv_A RAB5 protein, putative; 72.8 2.9 0.00012 18.9 3.5 26 74-99 4-29 (208)
175 2bme_A RAB4A, RAS-related prot 72.6 2.4 9.9E-05 19.5 3.0 23 76-98 9-31 (186)
176 2f9l_A RAB11B, member RAS onco 72.4 2.4 0.0001 19.4 3.1 23 76-98 4-26 (199)
177 1osn_A Thymidine kinase, VZV-T 72.3 2 8.3E-05 19.9 2.6 38 75-114 10-47 (341)
178 3cph_A RAS-related protein SEC 72.2 2.5 0.0001 19.3 3.1 24 75-98 18-41 (213)
179 2cdn_A Adenylate kinase; phosp 72.2 2.6 0.00011 19.1 3.2 31 71-101 14-44 (201)
180 2oil_A CATX-8, RAS-related pro 72.0 2.5 0.00011 19.3 3.1 25 75-99 23-47 (193)
181 2p67_A LAO/AO transport system 71.7 4 0.00017 18.0 8.2 43 77-119 56-98 (341)
182 2j28_9 Signal recognition part 71.5 4 0.00017 18.0 7.9 94 23-128 45-153 (430)
183 2c61_A A-type ATP synthase non 71.4 2 8.5E-05 19.9 2.5 27 77-103 152-178 (469)
184 1ek0_A Protein (GTP-binding pr 71.2 2.7 0.00011 19.1 3.1 21 78-98 4-24 (170)
185 3ez2_A Plasmid partition prote 71.1 4.1 0.00017 17.9 7.2 59 56-114 86-150 (398)
186 3dz8_A RAS-related protein RAB 70.9 2.7 0.00011 19.1 3.0 23 76-98 22-44 (191)
187 1sxj_A Activator 1 95 kDa subu 70.8 4.2 0.00018 17.9 5.8 64 42-114 35-109 (516)
188 1kao_A RAP2A; GTP-binding prot 70.6 2.8 0.00012 19.0 3.1 21 78-98 4-24 (167)
189 2o52_A RAS-related protein RAB 70.5 2.8 0.00012 19.0 3.0 23 76-98 24-46 (200)
190 2r44_A Uncharacterized protein 70.5 4.2 0.00018 17.9 10.0 122 55-235 32-164 (331)
191 2dpx_A GTP-binding protein RAD 70.4 2.9 0.00012 18.9 3.1 23 75-97 5-27 (174)
192 2nzj_A GTP-binding protein REM 70.4 2.9 0.00012 18.9 3.1 22 76-97 3-24 (175)
193 2j37_W Signal recognition part 70.3 4.3 0.00018 17.8 13.1 88 23-118 47-141 (504)
194 2dpy_A FLII, flagellum-specifi 70.2 4.3 0.00018 17.8 4.4 23 78-100 158-180 (438)
195 1r2q_A RAS-related protein RAB 69.8 3 0.00013 18.8 3.1 22 77-98 6-27 (170)
196 2p5s_A RAS and EF-hand domain 69.7 3 0.00013 18.8 3.1 22 77-98 28-49 (199)
197 2efe_B Small GTP-binding prote 69.5 3.2 0.00013 18.7 3.1 24 76-99 11-34 (181)
198 2gf9_A RAS-related protein RAB 69.5 3.6 0.00015 18.3 3.4 25 74-98 19-43 (189)
199 1zbd_A Rabphilin-3A; G protein 69.4 3.1 0.00013 18.7 3.1 22 77-98 8-29 (203)
200 2grj_A Dephospho-COA kinase; T 69.3 2.9 0.00012 18.9 2.9 35 72-112 8-42 (192)
201 2a5j_A RAS-related protein RAB 69.1 3.2 0.00013 18.6 3.1 23 76-98 20-42 (191)
202 2p65_A Hypothetical protein PF 68.9 4.6 0.00019 17.7 10.7 130 43-231 19-162 (187)
203 3bc1_A RAS-related protein RAB 68.8 3.3 0.00014 18.5 3.1 23 76-98 10-32 (195)
204 2fg5_A RAB-22B, RAS-related pr 68.7 3.2 0.00013 18.6 3.0 21 78-98 24-44 (192)
205 3cpj_B GTP-binding protein YPT 68.7 3.3 0.00014 18.6 3.1 23 76-98 12-34 (223)
206 3bwd_D RAC-like GTP-binding pr 68.6 3.2 0.00013 18.6 3.0 24 75-98 6-29 (182)
207 2qt1_A Nicotinamide riboside k 68.5 2.8 0.00012 19.0 2.7 23 78-100 22-44 (207)
208 2fn4_A P23, RAS-related protei 68.4 3.3 0.00014 18.6 3.0 23 76-98 8-30 (181)
209 1z08_A RAS-related protein RAB 68.3 3.5 0.00015 18.4 3.1 23 76-98 5-27 (170)
210 1iy2_A ATP-dependent metallopr 68.2 4.7 0.0002 17.6 4.7 55 55-114 48-105 (278)
211 3iij_A Coilin-interacting nucl 68.2 3 0.00013 18.8 2.8 23 79-101 13-35 (180)
212 1ls1_A Signal recognition part 68.1 4.7 0.0002 17.5 9.3 39 79-118 100-138 (295)
213 1yzq_A Small GTP binding prote 68.0 3.2 0.00013 18.6 2.9 22 78-99 7-28 (170)
214 1oix_A RAS-related protein RAB 68.0 3.4 0.00014 18.5 3.0 25 75-99 27-51 (191)
215 2g6b_A RAS-related protein RAB 67.8 3.5 0.00015 18.4 3.1 23 76-98 9-31 (180)
216 1gvn_B Zeta; postsegregational 67.7 4.8 0.0002 17.5 6.1 48 51-100 9-56 (287)
217 2ce2_X GTPase HRAS; signaling 67.3 3.6 0.00015 18.3 3.0 21 78-98 4-24 (166)
218 1dek_A Deoxynucleoside monopho 67.1 3.7 0.00016 18.2 3.1 40 77-124 1-40 (241)
219 1z0j_A RAB-22, RAS-related pro 66.8 3.8 0.00016 18.2 3.1 21 78-98 7-27 (170)
220 2fna_A Conserved hypothetical 66.7 3.2 0.00014 18.6 2.7 19 80-98 33-51 (357)
221 3kkq_A RAS-related protein M-R 66.4 3.9 0.00016 18.1 3.1 21 78-98 19-39 (183)
222 1u8z_A RAS-related protein RAL 66.3 4 0.00017 18.0 3.1 22 77-98 4-25 (168)
223 2jaq_A Deoxyguanosine kinase; 66.0 4.9 0.0002 17.5 3.5 23 79-101 2-24 (205)
224 2gf0_A GTP-binding protein DI- 66.0 3.9 0.00016 18.1 3.0 22 77-98 8-29 (199)
225 2npi_A Protein CLP1; CLP1-PCF1 65.8 5.3 0.00022 17.3 6.1 28 77-104 138-165 (460)
226 2i3b_A HCR-ntpase, human cance 65.7 3.7 0.00015 18.2 2.8 22 79-100 3-24 (189)
227 1x3s_A RAS-related protein RAB 65.4 4.2 0.00018 17.9 3.1 23 76-98 14-36 (195)
228 2bov_A RAla, RAS-related prote 65.4 4.5 0.00019 17.7 3.2 24 75-98 12-35 (206)
229 2gco_A H9, RHO-related GTP-bin 65.4 4.4 0.00019 17.7 3.2 21 78-98 26-46 (201)
230 3bos_A Putative DNA replicatio 65.2 5.4 0.00023 17.2 6.1 23 80-102 55-77 (242)
231 2iwr_A Centaurin gamma 1; ANK 65.1 4 0.00017 18.0 2.9 21 78-98 8-28 (178)
232 1qf9_A UMP/CMP kinase, protein 65.1 3.6 0.00015 18.3 2.7 24 78-101 7-30 (194)
233 3bbp_A RAB-6, RAS-related prot 65.1 3.9 0.00017 18.1 2.9 21 78-98 17-37 (211)
234 1z06_A RAS-related protein RAB 65.1 4.4 0.00018 17.8 3.1 24 75-98 18-41 (189)
235 2hxs_A RAB-26, RAS-related pro 64.6 4.4 0.00019 17.7 3.1 21 78-98 7-27 (178)
236 2hup_A RAS-related protein RAB 64.6 4.3 0.00018 17.8 3.0 23 76-98 28-50 (201)
237 2f7s_A C25KG, RAS-related prot 64.5 4.5 0.00019 17.7 3.1 23 76-98 24-46 (217)
238 3fsl_A Aromatic-amino-acid ami 64.5 5.6 0.00023 17.1 10.2 66 55-123 72-137 (397)
239 2fu5_C RAS-related protein RAB 64.4 2.6 0.00011 19.2 1.8 25 74-98 5-29 (183)
240 3e70_C DPA, signal recognition 64.3 5.6 0.00024 17.1 12.4 39 79-118 131-169 (328)
241 2ew1_A RAS-related protein RAB 64.3 4.9 0.00021 17.4 3.3 26 73-98 22-47 (201)
242 2il1_A RAB12; G-protein, GDP, 64.3 3.6 0.00015 18.3 2.5 23 75-97 24-46 (192)
243 2cjw_A GTP-binding protein GEM 64.1 4.7 0.0002 17.6 3.1 23 76-98 5-27 (192)
244 3gj0_A GTP-binding nuclear pro 63.8 4.5 0.00019 17.7 3.0 23 76-98 14-36 (221)
245 1cr0_A DNA primase/helicase; R 63.7 5.7 0.00024 17.0 5.3 35 80-115 38-72 (296)
246 3c5c_A RAS-like protein 12; GD 63.3 4.9 0.00021 17.4 3.1 23 76-98 20-42 (187)
247 3hdt_A Putative kinase; struct 63.1 4.3 0.00018 17.8 2.7 22 80-101 17-38 (223)
248 1z2a_A RAS-related protein RAB 63.0 4.9 0.00021 17.4 3.1 22 77-98 5-26 (168)
249 1c1y_A RAS-related protein RAP 62.7 5.1 0.00021 17.4 3.1 21 78-98 4-24 (167)
250 1sgw_A Putative ABC transporte 62.6 3.5 0.00015 18.4 2.2 26 74-99 32-57 (214)
251 2og2_A Putative signal recogni 62.6 6 0.00025 16.9 11.7 52 79-134 159-210 (359)
252 3fho_A ATP-dependent RNA helic 62.5 6 0.00025 16.9 4.5 45 80-124 161-206 (508)
253 3gqb_B V-type ATP synthase bet 62.3 4 0.00017 18.0 2.5 25 77-101 147-171 (464)
254 2qby_A CDC6 homolog 1, cell di 62.2 6.1 0.00026 16.8 4.4 55 57-113 27-82 (386)
255 3ihw_A Centg3; RAS, centaurin, 62.1 5.3 0.00022 17.2 3.1 23 76-98 19-41 (184)
256 3mfy_A V-type ATP synthase alp 62.1 6.1 0.00026 16.8 3.6 18 80-97 230-247 (588)
257 2atv_A RERG, RAS-like estrogen 62.0 5.3 0.00022 17.3 3.1 22 77-98 28-49 (196)
258 2ff7_A Alpha-hemolysin translo 61.3 4.1 0.00017 17.9 2.4 25 75-99 33-57 (247)
259 1z0f_A RAB14, member RAS oncog 61.3 6.2 0.00026 16.8 3.3 26 73-98 11-36 (179)
260 1ofh_A ATP-dependent HSL prote 61.2 6 0.00025 16.9 3.2 46 55-100 20-73 (310)
261 1ky3_A GTP-binding protein YPT 60.9 5.7 0.00024 17.1 3.1 22 77-98 8-29 (182)
262 3con_A GTPase NRAS; structural 60.8 5.7 0.00024 17.0 3.1 21 78-98 22-42 (190)
263 3gqb_A V-type ATP synthase alp 60.6 6.5 0.00027 16.7 4.6 23 78-100 222-244 (578)
264 2v1u_A Cell division control p 60.1 6.6 0.00028 16.6 4.9 23 79-101 46-68 (387)
265 2nq2_C Hypothetical ABC transp 60.1 4.2 0.00018 17.9 2.3 23 76-98 30-52 (253)
266 2atx_A Small GTP binding prote 60.0 6.7 0.00028 16.6 3.5 25 74-98 15-39 (194)
267 2r9v_A ATP synthase subunit al 59.3 6.9 0.00029 16.5 3.6 23 78-100 176-198 (515)
268 3kb2_A SPBC2 prophage-derived 59.2 6.1 0.00026 16.9 3.0 23 79-101 3-25 (173)
269 1zak_A Adenylate kinase; ATP:A 59.0 5.7 0.00024 17.0 2.8 25 77-101 5-29 (222)
270 1yqt_A RNAse L inhibitor; ATP- 58.7 6.1 0.00026 16.9 2.9 20 79-98 49-68 (538)
271 2q3h_A RAS homolog gene family 58.6 6.6 0.00028 16.6 3.1 22 77-98 20-41 (201)
272 1a7j_A Phosphoribulokinase; tr 58.4 6.8 0.00029 16.6 3.1 32 80-113 8-39 (290)
273 2cbz_A Multidrug resistance-as 58.3 5 0.00021 17.4 2.4 26 73-98 27-52 (237)
274 1e4v_A Adenylate kinase; trans 58.3 6.2 0.00026 16.8 2.9 24 78-101 1-24 (214)
275 3cbq_A GTP-binding protein REM 58.2 3.8 0.00016 18.2 1.8 22 76-97 22-43 (195)
276 1knq_A Gluconate kinase; ALFA/ 58.1 6 0.00025 16.9 2.8 20 81-100 12-31 (175)
277 1um8_A ATP-dependent CLP prote 58.1 7.2 0.0003 16.4 3.5 37 80-120 75-111 (376)
278 2ghi_A Transport protein; mult 58.0 5 0.00021 17.4 2.4 24 76-99 45-68 (260)
279 2fv8_A H6, RHO-related GTP-bin 57.8 6.7 0.00028 16.6 3.0 23 77-99 25-47 (207)
280 1m7b_A RND3/RHOE small GTP-bin 57.7 6.8 0.00028 16.6 3.0 21 78-98 8-28 (184)
281 1ukz_A Uridylate kinase; trans 57.4 7.4 0.00031 16.3 3.3 35 74-113 12-46 (203)
282 1ly1_A Polynucleotide kinase; 57.3 6.2 0.00026 16.8 2.8 28 80-111 5-32 (181)
283 2pze_A Cystic fibrosis transme 57.1 5.3 0.00022 17.2 2.4 24 76-99 33-56 (229)
284 3dpu_A RAB family protein; roc 57.0 7.5 0.00032 16.3 5.7 42 57-98 21-62 (535)
285 2bdt_A BH3686; alpha-beta prot 57.0 6.3 0.00026 16.8 2.8 29 80-113 5-33 (189)
286 1tev_A UMP-CMP kinase; ploop, 56.8 7.4 0.00031 16.3 3.1 24 78-101 4-27 (196)
287 1zd9_A ADP-ribosylation factor 56.7 7.4 0.00031 16.3 3.1 22 77-98 22-43 (188)
288 1ak2_A Adenylate kinase isoenz 56.6 7.3 0.00031 16.4 3.0 28 74-101 13-40 (233)
289 2dyk_A GTP-binding protein; GT 56.6 7.5 0.00031 16.3 3.1 22 77-98 1-22 (161)
290 1zd8_A GTP:AMP phosphotransfer 56.5 6.9 0.00029 16.5 2.9 35 75-114 5-39 (227)
291 3a1s_A Iron(II) transport prot 56.5 7.5 0.00032 16.3 3.1 23 76-98 4-26 (258)
292 2wkq_A NPH1-1, RAS-related C3 56.4 7.7 0.00032 16.2 4.0 14 205-218 69-82 (332)
293 1gwn_A RHO-related GTP-binding 56.3 7.4 0.00031 16.3 3.0 22 77-98 28-49 (205)
294 2j1l_A RHO-related GTP-binding 56.3 7.4 0.00031 16.3 3.0 22 77-98 34-55 (214)
295 1uf9_A TT1252 protein; P-loop, 56.1 7.3 0.00031 16.4 2.9 31 77-113 8-38 (203)
296 1mv5_A LMRA, multidrug resista 56.0 5.7 0.00024 17.0 2.4 27 74-100 25-51 (243)
297 1jjv_A Dephospho-COA kinase; P 55.9 6.4 0.00027 16.7 2.6 27 80-112 5-31 (206)
298 1hjr_A Holliday junction resol 55.8 7.9 0.00033 16.2 14.2 61 318-379 2-70 (158)
299 1ixz_A ATP-dependent metallopr 55.8 7.9 0.00033 16.2 4.6 54 55-115 24-82 (254)
300 3gfo_A Cobalt import ATP-bindi 55.1 5.6 0.00024 17.1 2.2 21 78-98 35-55 (275)
301 2qor_A Guanylate kinase; phosp 55.1 7.3 0.00031 16.3 2.8 21 80-100 15-35 (204)
302 2j69_A Bacterial dynamin-like 54.7 8.2 0.00034 16.1 5.7 40 52-98 51-90 (695)
303 2iw3_A Elongation factor 3A; a 54.3 6.5 0.00027 16.7 2.5 23 77-99 461-483 (986)
304 2bbs_A Cystic fibrosis transme 54.2 6.2 0.00026 16.8 2.3 26 74-99 61-86 (290)
305 2pjz_A Hypothetical protein ST 54.2 6.4 0.00027 16.7 2.4 21 79-99 32-52 (263)
306 2ixe_A Antigen peptide transpo 54.0 6.5 0.00027 16.7 2.4 26 75-100 43-68 (271)
307 3gmt_A Adenylate kinase; ssgci 53.8 8.4 0.00035 16.0 3.0 26 76-101 7-32 (230)
308 2qi9_C Vitamin B12 import ATP- 53.8 6 0.00025 16.9 2.2 22 78-99 27-48 (249)
309 2g3y_A GTP-binding protein GEM 53.8 8.5 0.00036 16.0 3.1 21 77-97 37-57 (211)
310 2obl_A ESCN; ATPase, hydrolase 53.7 8.5 0.00036 15.9 4.4 33 78-115 72-104 (347)
311 2xb4_A Adenylate kinase; ATP-b 53.5 8.6 0.00036 15.9 3.0 23 79-101 2-24 (223)
312 1m2o_B GTP binding, GTP-bindin 53.5 8.5 0.00036 15.9 3.0 35 54-97 9-43 (190)
313 2iyv_A Shikimate kinase, SK; t 53.5 7.6 0.00032 16.2 2.7 23 79-101 4-26 (184)
314 1fnn_A CDC6P, cell division co 53.4 8.6 0.00036 15.9 4.4 34 79-113 46-79 (389)
315 2zu0_C Probable ATP-dependent 53.4 7.8 0.00033 16.2 2.8 21 78-98 47-67 (267)
316 3euj_A Chromosome partition pr 53.4 8.6 0.00036 15.9 3.3 21 80-100 32-52 (483)
317 2f1r_A Molybdopterin-guanine d 53.2 5.3 0.00022 17.2 1.9 35 80-116 5-39 (171)
318 2gj8_A MNME, tRNA modification 52.9 8.7 0.00037 15.9 3.0 22 77-98 4-25 (172)
319 3end_A Light-independent proto 52.7 8.8 0.00037 15.8 4.8 33 79-113 43-75 (307)
320 1aky_A Adenylate kinase; ATP:A 52.6 8.8 0.00037 15.8 2.9 25 77-101 4-28 (220)
321 1jbk_A CLPB protein; beta barr 52.6 8.8 0.00037 15.8 8.3 35 80-114 46-85 (195)
322 2r62_A Cell division protease 52.4 8.9 0.00037 15.8 3.5 21 79-99 46-66 (268)
323 3nh6_A ATP-binding cassette SU 52.4 4.6 0.00019 17.6 1.4 27 73-99 76-102 (306)
324 2a9k_A RAS-related protein RAL 52.1 9 0.00038 15.8 3.1 22 77-98 18-39 (187)
325 1l2t_A Hypothetical ABC transp 51.9 6.8 0.00028 16.6 2.2 20 78-97 32-51 (235)
326 3n70_A Transport activator; si 51.9 9.1 0.00038 15.8 7.9 35 195-229 80-114 (145)
327 1g8p_A Magnesium-chelatase 38 51.8 9.1 0.00038 15.8 4.3 40 193-232 146-198 (350)
328 1nu0_A Hypothetical protein YQ 51.6 9.2 0.00039 15.7 4.9 56 317-375 3-60 (138)
329 2plr_A DTMP kinase, probable t 51.5 9.2 0.00039 15.7 4.9 33 80-115 7-39 (213)
330 2aka_B Dynamin-1; fusion prote 51.3 9.3 0.00039 15.7 5.5 42 57-98 6-47 (299)
331 2yz2_A Putative ABC transporte 51.3 7 0.0003 16.5 2.2 21 79-99 35-55 (266)
332 1zp6_A Hypothetical protein AT 51.3 8.9 0.00037 15.8 2.7 31 79-114 11-41 (191)
333 1fx0_A ATP synthase alpha chai 51.1 9.3 0.00039 15.7 3.5 23 78-100 164-186 (507)
334 2eyu_A Twitching motility prot 51.0 9.4 0.00039 15.7 4.8 33 80-113 28-60 (261)
335 2rex_B RHO-related GTP-binding 51.0 9.4 0.00039 15.7 3.1 21 78-98 11-31 (197)
336 2zej_A Dardarin, leucine-rich 50.8 7.8 0.00033 16.2 2.4 20 78-97 3-22 (184)
337 2w0m_A SSO2452; RECA, SSPF, un 50.5 9.5 0.0004 15.6 6.3 40 74-115 20-59 (235)
338 2iut_A DNA translocase FTSK; n 50.2 9.6 0.0004 15.6 4.6 44 73-116 210-255 (574)
339 2d2e_A SUFC protein; ABC-ATPas 50.0 9.6 0.0004 15.6 2.8 22 77-98 29-50 (250)
340 3gd7_A Fusion complex of cysti 49.9 9.8 0.00041 15.6 2.9 34 76-112 46-79 (390)
341 1ajs_A Aspartate aminotransfer 49.8 9.8 0.00041 15.6 6.2 18 221-238 183-200 (412)
342 2ihy_A ABC transporter, ATP-bi 49.8 7.7 0.00032 16.2 2.2 23 77-99 47-69 (279)
343 3hws_A ATP-dependent CLP prote 49.7 9.8 0.00041 15.6 4.7 47 55-101 20-75 (363)
344 3jvv_A Twitching mobility prot 49.5 9.9 0.00042 15.5 5.3 17 346-362 226-242 (356)
345 1e6c_A Shikimate kinase; phosp 49.5 9.8 0.00041 15.6 2.7 22 80-101 5-26 (173)
346 1kht_A Adenylate kinase; phosp 49.2 10 0.00042 15.5 4.6 29 79-107 5-33 (192)
347 2rhm_A Putative kinase; ZP_007 49.1 9.8 0.00041 15.6 2.7 23 79-101 7-29 (193)
348 2dr3_A UPF0273 protein PH0284; 49.1 10 0.00042 15.5 6.1 44 77-120 23-66 (247)
349 1b0u_A Histidine permease; ABC 48.6 9.6 0.0004 15.6 2.6 21 78-98 33-53 (262)
350 2ehv_A Hypothetical protein PH 48.3 10 0.00043 15.4 4.8 40 75-114 28-67 (251)
351 1vpl_A ABC transporter, ATP-bi 48.2 8.4 0.00035 16.0 2.2 20 79-98 43-62 (256)
352 2bwj_A Adenylate kinase 5; pho 48.1 10 0.00044 15.4 2.7 23 79-101 14-36 (199)
353 2vli_A Antibiotic resistance p 47.9 7.1 0.0003 16.4 1.8 21 79-99 7-27 (183)
354 1vht_A Dephospho-COA kinase; s 47.7 10 0.00043 15.4 2.6 28 79-112 6-33 (218)
355 3bk7_A ABC transporter ATP-bin 47.6 11 0.00044 15.3 2.9 21 78-98 118-138 (607)
356 1lv7_A FTSH; alpha/beta domain 47.4 11 0.00045 15.3 4.9 46 55-100 20-68 (257)
357 2f6r_A COA synthase, bifunctio 47.3 11 0.00045 15.3 3.5 32 75-112 73-104 (281)
358 3dm5_A SRP54, signal recogniti 47.2 11 0.00045 15.3 15.4 89 23-119 47-141 (443)
359 2ged_A SR-beta, signal recogni 47.2 11 0.00045 15.3 4.3 21 78-98 49-69 (193)
360 3dl0_A Adenylate kinase; phosp 47.1 11 0.00045 15.3 2.9 23 79-101 2-24 (216)
361 3l0i_B RAS-related protein RAB 47.1 3.5 0.00015 18.4 0.2 22 75-96 31-52 (199)
362 2ius_A DNA translocase FTSK; n 47.0 11 0.00046 15.3 4.6 43 73-115 163-207 (512)
363 2x8a_A Nuclear valosin-contain 46.7 11 0.00046 15.3 4.1 33 78-115 45-77 (274)
364 2pt5_A Shikimate kinase, SK; a 46.5 11 0.00046 15.2 3.0 23 79-101 2-24 (168)
365 2qp9_X Vacuolar protein sortin 46.4 11 0.00046 15.2 4.9 32 78-114 85-116 (355)
366 2olj_A Amino acid ABC transpor 46.1 9.5 0.0004 15.7 2.2 21 78-98 51-71 (263)
367 2h5e_A Peptide chain release f 46.0 11 0.00047 15.2 7.5 140 77-239 13-153 (529)
368 1r6b_X CLPA protein; AAA+, N-t 45.8 11 0.00047 15.2 5.6 52 43-104 183-234 (758)
369 2pcj_A ABC transporter, lipopr 45.7 9.7 0.00041 15.6 2.2 33 77-112 30-63 (224)
370 1np6_A Molybdopterin-guanine d 45.5 11 0.00048 15.1 4.9 36 79-116 8-43 (174)
371 2onk_A Molybdate/tungstate ABC 45.5 11 0.00048 15.1 2.8 21 79-99 26-46 (240)
372 3ld9_A DTMP kinase, thymidylat 45.4 11 0.00048 15.1 4.1 36 79-114 23-58 (223)
373 3fb4_A Adenylate kinase; psych 44.9 12 0.00049 15.1 2.9 23 79-101 2-24 (216)
374 2x77_A ADP-ribosylation factor 44.9 9.7 0.00041 15.6 2.1 20 78-97 23-42 (189)
375 2d7d_A Uvrabc system protein B 44.8 12 0.00049 15.1 8.9 66 55-133 17-82 (661)
376 1svm_A Large T antigen; AAA+ f 44.7 12 0.00049 15.1 3.9 30 79-113 171-200 (377)
377 3cf0_A Transitional endoplasmi 44.7 12 0.00049 15.1 5.3 33 78-115 50-82 (301)
378 2it2_A UPF0130 protein PH1069; 44.5 12 0.0005 15.0 6.3 17 332-348 143-159 (200)
379 3ga2_A Endonuclease V; alpha-b 44.5 12 0.0005 15.0 8.4 80 317-398 40-144 (246)
380 2dou_A Probable N-succinyldiam 43.6 12 0.00051 15.0 3.1 66 51-122 61-126 (376)
381 1ksh_A ARF-like protein 2; sma 43.5 12 0.00051 14.9 2.9 20 78-97 19-38 (186)
382 2bbw_A Adenylate kinase 4, AK4 43.5 12 0.00051 14.9 2.9 33 76-113 26-58 (246)
383 3fvs_A Kynurenine--oxoglutarat 43.1 12 0.00052 14.9 2.7 26 96-121 104-129 (422)
384 1g6h_A High-affinity branched- 43.0 11 0.00048 15.2 2.2 21 78-98 34-54 (257)
385 1nn5_A Similar to deoxythymidy 42.9 12 0.00052 14.9 5.0 34 80-113 12-45 (215)
386 2vp4_A Deoxynucleoside kinase; 42.8 9.9 0.00042 15.5 1.9 34 77-115 20-53 (230)
387 2rgx_A Adenylate kinase; trans 42.7 13 0.00053 14.9 2.9 23 79-101 2-24 (206)
388 2v54_A DTMP kinase, thymidylat 42.6 13 0.00053 14.9 2.8 35 80-117 7-41 (204)
389 3a00_A Guanylate kinase, GMP k 42.5 13 0.00053 14.9 2.8 21 80-100 4-24 (186)
390 3io5_A Recombination and repai 42.4 13 0.00053 14.8 5.4 40 74-114 26-65 (333)
391 1ii8_A RAD50 ABC-ATPase; MRE11 42.3 13 0.00054 14.8 3.3 24 80-105 26-49 (195)
392 2qnr_A Septin-2, protein NEDD5 42.1 13 0.00054 14.8 2.8 21 78-98 19-39 (301)
393 3bh0_A DNAB-like replicative h 41.7 13 0.00055 14.8 6.0 34 80-115 71-104 (315)
394 3g5u_A MCG1178, multidrug resi 41.6 13 0.00055 14.8 2.5 25 75-99 414-438 (1284)
395 3hkw_A NS5B RNA-dependent RNA 41.5 9.9 0.00041 15.5 1.7 22 49-70 61-82 (581)
396 2wji_A Ferrous iron transport 41.3 13 0.00056 14.7 3.1 21 78-98 4-24 (165)
397 3i8s_A Ferrous iron transport 41.3 13 0.00056 14.7 3.0 21 78-98 4-24 (274)
398 1ji0_A ABC transporter; ATP bi 41.3 12 0.00052 14.9 2.2 20 79-98 34-53 (240)
399 2h17_A ADP-ribosylation factor 41.2 13 0.00056 14.7 2.8 21 78-98 22-42 (181)
400 2r2a_A Uncharacterized protein 41.1 13 0.00056 14.7 2.8 23 80-102 8-30 (199)
401 1v43_A Sugar-binding transport 41.0 13 0.00056 14.7 2.8 21 79-99 39-59 (372)
402 1r8s_A ADP-ribosylation factor 40.9 13 0.00056 14.7 2.9 21 78-98 1-21 (164)
403 1nks_A Adenylate kinase; therm 40.8 13 0.00057 14.7 4.7 27 80-106 4-30 (194)
404 1qhx_A CPT, protein (chloramph 40.8 13 0.00057 14.7 2.8 21 80-100 6-26 (178)
405 3fdi_A Uncharacterized protein 40.5 14 0.00057 14.7 2.7 22 80-101 9-30 (201)
406 1htw_A HI0065; nucleotide-bind 40.3 9.6 0.0004 15.6 1.5 35 79-118 35-69 (158)
407 1moz_A ARL1, ADP-ribosylation 40.2 13 0.00053 14.9 2.1 32 78-117 19-50 (183)
408 1via_A Shikimate kinase; struc 40.1 14 0.00058 14.6 2.8 22 80-101 7-28 (175)
409 2qag_B Septin-6, protein NEDD5 40.1 14 0.00058 14.6 2.7 22 77-98 42-63 (427)
410 2ffh_A Protein (FFH); SRP54, s 39.9 14 0.00058 14.6 13.1 89 22-118 45-138 (425)
411 1f2t_A RAD50 ABC-ATPase; DNA d 39.7 14 0.00059 14.6 2.9 19 80-98 26-44 (149)
412 1kag_A SKI, shikimate kinase I 39.6 14 0.00059 14.6 2.8 23 79-101 6-28 (173)
413 2x2e_A Dynamin-1; nitration, h 39.6 14 0.00059 14.6 4.4 22 77-98 26-47 (341)
414 1q3t_A Cytidylate kinase; nucl 39.4 14 0.00059 14.6 3.0 36 78-118 17-52 (236)
415 2qmo_A Dethiobiotin synthetase 39.2 14 0.0006 14.5 3.1 32 82-115 6-38 (220)
416 2awn_A Maltose/maltodextrin im 39.0 14 0.0006 14.5 2.8 21 79-99 31-51 (381)
417 3eph_A TRNA isopentenyltransfe 38.9 14 0.00061 14.5 2.7 22 80-101 5-26 (409)
418 1iv0_A Hypothetical protein; r 38.7 14 0.00061 14.5 6.1 55 318-375 2-58 (98)
419 1p9r_A General secretion pathw 38.7 15 0.00061 14.5 4.7 35 202-239 150-186 (418)
420 2v3c_C SRP54, signal recogniti 38.6 15 0.00061 14.5 8.2 40 78-118 100-139 (432)
421 3exa_A TRNA delta(2)-isopenten 38.3 15 0.00062 14.4 2.8 21 80-100 6-26 (322)
422 1d2f_A MALY protein; aminotran 38.2 15 0.00062 14.4 6.3 58 57-122 68-126 (390)
423 2kjq_A DNAA-related protein; s 38.1 15 0.00062 14.4 3.6 22 80-101 39-60 (149)
424 3lxw_A GTPase IMAP family memb 38.0 15 0.00063 14.4 3.1 22 76-97 20-41 (247)
425 2h57_A ADP-ribosylation factor 37.8 15 0.00063 14.4 2.3 20 78-97 22-41 (190)
426 3hu3_A Transitional endoplasmi 37.8 15 0.00063 14.4 4.1 11 279-289 301-311 (489)
427 3fgn_A Dethiobiotin synthetase 37.5 15 0.00064 14.4 3.6 37 76-114 25-62 (251)
428 2ocp_A DGK, deoxyguanosine kin 37.3 15 0.00064 14.3 2.4 23 79-101 4-26 (241)
429 3fvq_A Fe(3+) IONS import ATP- 37.3 15 0.00064 14.3 2.7 20 79-98 32-51 (359)
430 1upt_A ARL1, ADP-ribosylation 37.3 15 0.00064 14.3 3.3 23 76-98 6-28 (171)
431 2pez_A Bifunctional 3'-phospho 37.3 15 0.00064 14.3 2.8 29 79-107 7-35 (179)
432 2x5d_A Probable aminotransfera 37.2 15 0.00064 14.3 5.7 28 95-122 111-138 (412)
433 1cke_A CK, MSSA, protein (cyti 37.0 15 0.00065 14.3 2.8 25 79-103 7-31 (227)
434 1g29_1 MALK, maltose transport 37.0 15 0.00065 14.3 2.8 21 79-99 31-51 (372)
435 1iay_A ACC synthase 2, 1-amino 36.9 15 0.00065 14.3 7.2 58 56-121 86-146 (428)
436 3d3q_A TRNA delta(2)-isopenten 36.9 15 0.00065 14.3 2.8 21 80-100 10-30 (340)
437 2h92_A Cytidylate kinase; ross 36.9 15 0.00065 14.3 2.8 36 78-118 4-39 (219)
438 2hox_A ALLIIN lyase 1; cystein 36.7 16 0.00066 14.3 5.3 35 87-121 129-169 (427)
439 2yyz_A Sugar ABC transporter, 36.1 16 0.00067 14.2 2.8 21 79-99 31-51 (359)
440 3k1j_A LON protease, ATP-depen 35.4 16 0.00069 14.2 4.1 37 55-99 46-82 (604)
441 1z6g_A Guanylate kinase; struc 35.3 11 0.00047 15.2 1.2 21 80-100 26-46 (218)
442 1z47_A CYSA, putative ABC-tran 35.3 16 0.00069 14.1 2.8 23 77-99 41-63 (355)
443 2c95_A Adenylate kinase 1; AP4 35.3 16 0.00069 14.1 2.7 22 80-101 12-33 (196)
444 3kta_A Chromosome segregation 35.2 16 0.00069 14.1 2.9 23 80-104 29-51 (182)
445 2q7w_A Aspartate aminotransfer 35.0 17 0.0007 14.1 8.5 65 55-122 71-135 (396)
446 2b6h_A ADP-ribosylation factor 34.7 17 0.00071 14.1 2.8 20 78-97 30-49 (192)
447 1q57_A DNA primase/helicase; d 34.6 17 0.00071 14.1 3.5 13 246-258 270-282 (503)
448 2wsm_A Hydrogenase expression/ 34.2 17 0.00072 14.0 5.0 43 77-122 30-72 (221)
449 3llu_A RAS-related GTP-binding 34.1 17 0.00072 14.0 2.9 20 78-97 21-40 (196)
450 2cxx_A Probable GTP-binding pr 33.8 17 0.00073 14.0 2.9 22 77-98 1-22 (190)
451 2wjg_A FEOB, ferrous iron tran 33.5 18 0.00074 14.0 3.1 22 77-98 7-28 (188)
452 2ze6_A Isopentenyl transferase 33.4 18 0.00074 14.0 3.1 23 79-101 3-25 (253)
453 1w5s_A ORC2; CDC6, DNA replica 33.3 18 0.00074 13.9 4.9 48 52-100 27-75 (412)
454 3crm_A TRNA delta(2)-isopenten 33.3 18 0.00074 13.9 2.8 22 79-100 7-28 (323)
455 3foz_A TRNA delta(2)-isopenten 33.2 18 0.00075 13.9 2.8 22 79-100 12-33 (316)
456 1tf7_A KAIC; homohexamer, hexa 33.0 18 0.00075 13.9 5.7 40 74-114 36-75 (525)
457 1lvg_A Guanylate kinase, GMP k 33.0 18 0.00075 13.9 2.8 22 80-101 7-28 (198)
458 2qmh_A HPR kinase/phosphorylas 32.8 18 0.00076 13.9 2.6 18 78-95 35-52 (205)
459 2it1_A 362AA long hypothetical 32.7 18 0.00076 13.9 2.8 22 78-99 30-51 (362)
460 3tmk_A Thymidylate kinase; pho 32.6 18 0.00076 13.9 3.3 35 80-118 8-42 (216)
461 1z6t_A APAF-1, apoptotic prote 31.8 19 0.00079 13.8 8.0 64 46-117 124-190 (591)
462 1fzq_A ADP-ribosylation factor 31.7 19 0.00079 13.8 2.8 21 77-97 16-36 (181)
463 1oxx_K GLCV, glucose, ABC tran 31.5 15 0.00064 14.4 1.4 20 79-98 33-52 (353)
464 1f5n_A Interferon-induced guan 31.1 19 0.00081 13.7 2.2 21 77-97 38-58 (592)
465 2yvu_A Probable adenylyl-sulfa 30.9 19 0.00081 13.7 2.8 24 78-101 14-37 (186)
466 3a4m_A L-seryl-tRNA(SEC) kinas 30.8 19 0.00082 13.7 4.6 33 79-113 6-38 (260)
467 3ez1_A Aminotransferase MOCR f 30.4 20 0.00083 13.6 7.1 20 104-123 121-140 (423)
468 2qag_C Septin-7; cell cycle, c 30.2 20 0.00084 13.6 2.5 21 77-97 31-51 (418)
469 1gtv_A TMK, thymidylate kinase 30.0 20 0.00084 13.6 1.9 24 80-103 3-26 (214)
470 1e9r_A Conjugal transfer prote 29.8 20 0.00085 13.6 5.0 37 80-118 56-92 (437)
471 3ney_A 55 kDa erythrocyte memb 29.7 20 0.00085 13.6 2.9 21 80-100 22-42 (197)
472 3eie_A Vacuolar protein sortin 29.6 20 0.00086 13.5 6.4 33 78-115 52-84 (322)
473 3b9p_A CG5977-PA, isoform A; A 29.4 21 0.00086 13.5 6.2 52 48-100 23-77 (297)
474 1l8q_A Chromosomal replication 29.1 21 0.00087 13.5 11.7 50 55-113 22-71 (324)
475 3dhw_C Methionine import ATP-b 29.1 21 0.00087 13.5 2.2 21 79-99 33-53 (343)
476 1m7y_A ACC synthase, 1-aminocy 29.0 21 0.00087 13.5 8.1 58 56-121 89-149 (435)
477 2ccj_A DTMP kinase, thymidylat 29.0 21 0.00088 13.5 4.7 34 80-116 5-39 (205)
478 2qu8_A Putative nucleolar GTP- 29.0 21 0.00088 13.5 3.0 23 75-97 27-49 (228)
479 1ltq_A Polynucleotide kinase; 28.8 21 0.00088 13.5 2.8 20 80-99 5-24 (301)
480 3meb_A Aspartate aminotransfer 28.7 21 0.00089 13.5 6.9 64 55-121 96-159 (448)
481 1m7g_A Adenylylsulfate kinase; 28.7 21 0.00089 13.5 1.8 23 80-102 28-50 (211)
482 2zan_A Vacuolar protein sortin 28.7 21 0.00089 13.5 5.0 22 78-99 168-189 (444)
483 1p5z_B DCK, deoxycytidine kina 28.6 18 0.00075 13.9 1.4 26 76-101 23-48 (263)
484 3bgw_A DNAB-like replicative h 28.6 21 0.00089 13.4 4.9 57 4-74 10-66 (444)
485 2gb3_A Aspartate aminotransfer 28.5 21 0.00089 13.4 5.2 59 56-122 82-141 (409)
486 2pbr_A DTMP kinase, thymidylat 28.4 21 0.0009 13.4 4.7 33 80-114 3-35 (195)
487 1zj6_A ADP-ribosylation factor 28.1 22 0.00091 13.4 3.0 21 78-98 17-37 (187)
488 1nlf_A Regulatory protein REPA 28.1 22 0.00091 13.4 6.6 43 79-121 32-84 (279)
489 1yaa_A Aspartate aminotransfer 27.9 22 0.00092 13.4 6.8 64 55-121 75-138 (412)
490 3d31_A Sulfate/molybdate ABC t 27.5 22 0.00093 13.3 1.8 21 79-99 28-48 (348)
491 3d8b_A Fidgetin-like protein 1 27.2 22 0.00094 13.3 5.0 55 55-115 92-150 (357)
492 1tq4_A IIGP1, interferon-induc 27.1 22 0.00094 13.3 3.0 22 77-98 69-90 (413)
493 1znw_A Guanylate kinase, GMP k 26.7 23 0.00096 13.2 2.8 20 80-99 23-42 (207)
494 1nrj_B SR-beta, signal recogni 26.7 23 0.00096 13.2 2.9 21 78-98 13-33 (218)
495 2fh5_B SR-beta, signal recogni 26.4 23 0.00097 13.2 2.9 21 78-98 8-28 (214)
496 2cb5_A Protein (bleomycin hydr 26.3 23 0.00098 13.2 1.7 54 280-335 283-338 (453)
497 3lv8_A DTMP kinase, thymidylat 26.3 23 0.00098 13.2 6.6 50 80-129 30-79 (236)
498 3ezs_A Aminotransferase ASPB; 26.2 14 0.00059 14.6 0.4 108 87-200 88-195 (376)
499 2bcg_Y Protein YP2, GTP-bindin 26.1 23 0.00098 13.2 3.0 23 76-98 7-29 (206)
500 2o1b_A Aminotransferase, class 25.9 24 0.00099 13.1 2.5 136 57-202 89-224 (404)
No 1
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=100.00 E-value=2.7e-42 Score=283.97 Aligned_cols=419 Identities=16% Similarity=0.153 Sum_probs=290.7
Q ss_pred CCCHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECC
Q ss_conf 46746788899987070666528866776421455777565557845899999999999874056555421012465025
Q gi|254781215|r 6 PTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAG 85 (511)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sg 85 (511)
++.+++.+|+ ..|++||+-|+.-++---...+.+-.|+ |.+||+++++.+.++++ ..|..|
T Consensus 126 ~~t~~~~~e~------~kc~~d~~yF~~~y~~i~~~~~g~vpf~-l~~~Q~~~l~~~~~~Rf------------~Iilk~ 186 (592)
T 3cpe_A 126 QWTREMVEEW------KKCRDDIVYFAETYCAITHIDYGVIKVQ-LRDYQRDMLKIMSSKRM------------TVCNLS 186 (592)
T ss_dssp CCCHHHHHHH------HHHHTCHHHHHHHTCBCCBTTTBSBBCC-CCHHHHHHHHHHHHCSE------------EEEEEC
T ss_pred CCCHHHHHHH------HHHHCCHHHHHHHEEEEECCCCCEEECC-CCHHHHHHHHHHHHCCE------------EEEEEC
T ss_conf 7789999999------9874088999862189987889844276-76999999999874376------------899946
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 76597899999999999808996699980858999999999999999855000134443222222333444321112357
Q gi|254781215|r 86 RGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGID 165 (511)
Q Consensus 86 rG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~~Q~~~ilw~Ei~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (511)
||+|||++++++++|+++++|+.+++++||+++|++.+ +..++.++..+|......... .....+...
T Consensus 187 RQ~GKSt~~a~~~l~~al~~~~~~i~ivA~~~~~A~~i-~~~ik~~~~~lP~~l~~~~~~-----------~n~~~i~~~ 254 (592)
T 3cpe_A 187 RQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEV-LDRTKQAIELLPDFLQPGIVE-----------WNKGSIELD 254 (592)
T ss_dssp SSSCHHHHHHHHHHHHHHTSSSCEEEEEESSHHHHHHH-HHHHHHHHTTSCTTTSCCEEE-----------ECSSEEEET
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHH-HHHHHHHHHHCCHHHCCCCCC-----------CCCCEEEEC
T ss_conf 98869999999999999829997599991989999999-999999999681330466434-----------664126745
Q ss_pred CCEEEEEECCCCCCCCCHHHHCCCCCCEEEEECCHHCCCH--HHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHHHHC
Q ss_conf 8616985303575561002120267614999711102997--88988888850799813899823899876556765303
Q gi|254781215|r 166 SKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPD--VINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNK 243 (511)
Q Consensus 166 ~~~~~~~~~~~s~~~~ea~~G~h~~~~~lvI~DEAsgI~d--~i~e~i~~~Lt~~g~~~~~i~~~nP~~~~g~fy~~~~~ 243 (511)
+++.... +..++++.+|. +..++++||++++++ ++|.++.++++..+.. +++.+|+|++.. .||+.+..
T Consensus 255 Ngs~i~~----~a~~~da~RG~---s~~~l~lDE~Afi~~~~e~~~~~~~~l~~g~~~-kiii~STpnG~n-~fy~~~~~ 325 (592)
T 3cpe_A 255 NGSSIGA----YASSPDAVRGN---SFAMIYIEDCAFIPNFHDSWLAIQPVISSGRRS-KIIITTTPNGLN-HFYDIWTA 325 (592)
T ss_dssp TSCEEEE----EECCHHHHHHS---CCSEEEEETGGGCTTHHHHHHHHHHHHSSSSCC-EEEEEECCCTTS-HHHHHHHH
T ss_pred CCCEEEE----ECCCCCCCCCC---CCCCEEEEHHHHCCHHHHHHHHHCCCCCCCCCC-EEEEECCCCCCC-CCHHHHHH
T ss_conf 8725875----04788666677---666327531320406888875302334368873-699977998876-32789988
Q ss_pred ---CCCCCEEEEECCCCCCCC--------CHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCEEECHHHHHHHHHCC---
Q ss_conf ---524741798404336778--------977899999751898013544431756666787375599998864076---
Q gi|254781215|r 244 ---PLDDWKRFQIDTRTVEGI--------DPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNRE--- 309 (511)
Q Consensus 244 ---~~~~w~~~~i~~~~~p~~--------~~~~ie~~~~~~geds~~~r~evlgeFp~~~~~~~i~~~~ie~a~~r~--- 309 (511)
....|..+.+.|...|.. +..|.....+..+.....|++|++|+|..++.. +|+.+.+..+....
T Consensus 326 a~~g~~~~~~~~~~w~~~per~~~d~~~~~~~~~w~~e~i~~~s~~~F~QEy~~eF~~s~~~-vf~~~~l~~~~~~~~~~ 404 (592)
T 3cpe_A 326 AVEGKSGFEPYTAIWNSVKERLYNDEDIFDDGWQWSIQTINGSSLAQFRQEHTAAFEGTSGT-LISGMKLAVMDFIEVTP 404 (592)
T ss_dssp HHTTCSSCEEEEECGGGSGGGGBCTTSBBCTTHHHHHHHHTTSCHHHHHHHHSCCCTTSCSB-SSCHHHHTTCCCCCCCC
T ss_pred HHHCCCCCCCEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCH-HHHHHHHHHHCCCCCCC
T ss_conf 74077766741234345776335542100043799999874577555301434332345430-56778987620222203
Q ss_pred --------CCCCCCCEEEEEEECCCC-CCCCEEEEEEC--CC--EEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf --------531899708999623334-78417999822--75--589987327789889999999999861888299800
Q gi|254781215|r 310 --------PCPDPYAPLIMGCDIAEE-GGDNTVVVLRR--GP--VIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDA 376 (511)
Q Consensus 310 --------~~~~~~~~~viGvDVAr~-G~D~svi~~r~--G~--~v~~~~~~~~~d~~~~a~~i~~~~~~~~~~~i~iD~ 376 (511)
..+.++..+++|+|||++ |+|.+++.+-. +. .+......++.++..++..|..++..|+++.|+||.
T Consensus 405 ~~~~~~iye~p~~~~~YvigvDvA~G~~~DySai~Vidv~~~~~eqVa~~~~n~i~~~~~a~~I~~l~~~YN~a~V~VE~ 484 (592)
T 3cpe_A 405 DDHGFHQFKKPEPDRKYIATLDCSEGRGQDYHALHIIDVTDDVWEQVGVLHSNTISHLILPDIVMRYLVEYNECPVYIEL 484 (592)
T ss_dssp CSSSEEESSCCCTTCCEEEEEECCSSBTTBCEEEEEEECSSSSEEEEEEEEESSSCTTTHHHHHHHHHHHTTSCCEEEEE
T ss_pred CCCCEEEEECCCCCCCEEEEEECCCCCCCCCEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 47781332446766602688512445777732799941478761899998358889899999999999972884899997
Q ss_pred CCCCHHHHHHHH-HCCCE-EEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHCCCEEEECCCCEE
Q ss_conf 687636889898-64982-798427777664025522799999999999970899-981899999857967998799849
Q gi|254781215|r 377 NNTGARTCDYLE-MLGYH-VYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASL-INHSGLIQNLKSLKSFIVPNTGEL 453 (511)
Q Consensus 377 ~GvG~gV~d~L~-~~g~~-v~~v~~~~~~~~~~~y~N~rae~~~~~re~l~~g~l-~~d~~l~~el~~~~~~~~~~~gki 453 (511)
+|+|.+|++.|. ++++. +..-....... ..-...|..++-+|+++|+.+.+ +++..|++||.+-. . .+|+.
T Consensus 485 N~~G~~Vi~~L~~dl~y~nl~~~~~~~~Gf--~tT~ksK~~~is~Lk~liE~~~i~i~~~~li~EL~tFv---~-~~~~~ 558 (592)
T 3cpe_A 485 NSTGVSVAKSLYMDLEYEGVICDSYTDLGM--KQTKRTKAVGCSTLKDLIEKDKLIIHHRATIQEFRTFS---E-KGVSW 558 (592)
T ss_dssp SHHHHHHHHHHHTTSCCSCEECSSSSCSSE--ECCHHHHHHHHHHHHHHHHTTSEECCCHHHHHHHTSEE---E-ETTEE
T ss_pred CCCHHHHHHHHHHHHCCCCCCCCCCCCCCC--CCCCCCHHHHHHHHHHHHHCCCEEECCHHHHHHHHHHH---H-CCCEE
T ss_conf 984999999998874557514677677787--57845599999999999974986989888999999986---4-49751
Q ss_pred EEEECHHHCCCCCCHHHHHHHHH
Q ss_conf 99841254899989899999997
Q gi|254781215|r 454 AIESKRVKGAKSTDYSDGLMYTF 476 (511)
Q Consensus 454 ~ie~Kkkrg~~SPD~ADAl~l~f 476 (511)
.-. -|.+=|+..||+|+.
T Consensus 559 ~A~-----~G~HDDlVmalala~ 576 (592)
T 3cpe_A 559 AAE-----EGYHDDLVMSLVIFG 576 (592)
T ss_dssp EEC-----TTCCCHHHHHHHHHH
T ss_pred CCC-----CCCCHHHHHHHHHHH
T ss_conf 478-----999779999999999
No 2
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=99.96 E-value=2.5e-26 Score=183.23 Aligned_cols=243 Identities=15% Similarity=0.124 Sum_probs=164.4
Q ss_pred CCCHHHHHHHHHHHHCHHHHHHHHHHHH-HHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEC
Q ss_conf 4674678889998707066652886677-642145577756555784589999999999987405655542101246502
Q gi|254781215|r 6 PTNPETEQKLFDLMWSDEIKLSFSNFVL-HFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISA 84 (511)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~w~~~~~~~~~~~~P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~s 84 (511)
++.+++.+ ++ ..|.+||+-|+. |+..--.+ ..+-.|. |.++|+++|+++.+++ ...|..
T Consensus 126 ~~t~e~~~----e~--~kc~~dp~yF~~~y~~i~~~~-~G~ipF~-Lyp~Qkell~~~~~~R------------f~IvlK 185 (385)
T 2o0j_A 126 QWTREMVE----EW--KKCRDDIVYFAETYCAITHID-YGVIKVQ-LRDYQRDMLKIMSSKR------------MTVCNL 185 (385)
T ss_dssp CCCHHHHH----HH--HHHHHCHHHHHHHHCEEECSS-SCEEECC-CCHHHHHHHHHHHHSS------------EEEEEE
T ss_pred CCCHHHHH----HH--HHHHCCHHHHHHHEEEEECCC-CCEEECC-CCHHHHHHHHHHHHCC------------EEEEEE
T ss_conf 77999999----99--998419899986237998888-9855277-7699999999997504------------789996
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 57659789999999999980899669998085899999999999999985500013444322222233344432111235
Q gi|254781215|r 85 GRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGI 164 (511)
Q Consensus 85 grG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~~Q~~~ilw~Ei~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (511)
||++|||++++++++|+++++++.+++++|++.+|++.+ +..++.++..+|.......... ....+..
T Consensus 186 sRQ~GKTT~~a~~~L~~Alf~~~~~i~IiA~k~~~A~~i-~~~ik~~~e~lP~~~~~~~~~~-----------~~~~~~~ 253 (385)
T 2o0j_A 186 SRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEV-LDRTKQAIELLPDFLQPGIVEW-----------NKGSIEL 253 (385)
T ss_dssp CSSSCHHHHHHHHHHHHHHSSSSCEEEEEESSHHHHHHH-HHHHHHHHHHSCTTTSCCEEEE-----------CSSEEEE
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHH-HHHHHHHHHHCHHHHHHCCCHH-----------HHHHCCC
T ss_conf 266872087999999999726677148861537889999-9999999865616553023102-----------2231235
Q ss_pred CCCEEEEEECCCCCCCCCHHHHCCCCCCEEEEECCHHCCC--HHHHHH-HHHHHCCCCCCEEEEEECCCCCCCCHHHHHH
Q ss_conf 7861698530357556100212026761499971110299--788988-8888507998138998238998765567653
Q gi|254781215|r 165 DSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTP--DVINLG-ILGFLTERNANRFWIMTSNPRRLSGKFYEIF 241 (511)
Q Consensus 165 ~~~~~~~~~~~~s~~~~ea~~G~h~~~~~lvI~DEAsgI~--d~i~e~-i~~~Lt~~g~~~~~i~~~nP~~~~g~fy~~~ 241 (511)
.++..... +..++++.+|. ...++++||++.++ +.+|.+ +.+++++.+.+ ++++|||++. +.||++|
T Consensus 254 ~ngs~i~~----~a~s~da~RG~---~~~~lilDE~Afi~~~~e~~~~~~~~~~s~~~Gk--iIiiSTPNG~-N~FYdl~ 323 (385)
T 2o0j_A 254 DNGSSIGA----YASSPDAVRGN---SFAMIYIEDCAFIPNFHDSWLAIQPVISSGRRSK--IIITTTPNGL-NHFYDIW 323 (385)
T ss_dssp TTSCEEEE----EECSHHHHHTS---CCSEEEEESGGGSTTHHHHHHHHHHHHHSTTCCE--EEEEECCCSS-SHHHHHH
T ss_pred CCCCCEEE----CCCCCCCCCCC---CCCCEEHHHHHHHHHHHHHHHHHCCCCCCCCCCE--EEEEECCCCC-CHHHHHH
T ss_conf 78631010----23455654542---0254203265410026888875313422489803--9999899987-0499999
Q ss_pred HC---CCCCCEEEEECCCCCCCC----------CHHHHHHHHHHCCCCHHHHHHHHCCCCCCCC
Q ss_conf 03---524741798404336778----------9778999997518980135444317566667
Q gi|254781215|r 242 NK---PLDDWKRFQIDTRTVEGI----------DPSFHEGIIARYGLDSDVTRVEVCGQFPQQD 292 (511)
Q Consensus 242 ~~---~~~~w~~~~i~~~~~p~~----------~~~~ie~~~~~~geds~~~r~evlgeFp~~~ 292 (511)
.. ....|..+.++|...|.. +.+|.++.++. .++..|+|||+|+|..++
T Consensus 324 ~~A~~g~n~f~~~~~~W~~~p~r~~~~~~~~dee~~~~~~~~~~--~s~~~F~QEYeceFlgSs 385 (385)
T 2o0j_A 324 TAAVEGKSGFEPYTAIWNSVKERLYNDEDIFDDGWQWSIQTING--SSLAQFRQEHTAAFEGTS 385 (385)
T ss_dssp HHHHTTCSSCEEEEECGGGSGGGGBCTTSBBCTTHHHHHHHHHT--SCHHHHHHHHSCCCSSCC
T ss_pred HHHHHCCCCCEEEEECCEECCCCCCCCCCCCHHHHHHHHHHHHC--CCHHHHHHHHCCEECCCC
T ss_conf 99870888863786140105552046888980799999998755--999999998498607879
No 3
>3c6a_A Terminase large subunit; terminase nuclease, viral protein; 1.16A {Enterobacteria phage RB49} PDB: 3c6h_A
Probab=99.20 E-value=5.4e-10 Score=80.28 Aligned_cols=156 Identities=19% Similarity=0.193 Sum_probs=110.6
Q ss_pred HCCCCCCCCCEEEEEEECCCC-CCCCEEEEEECCC----EEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCH
Q ss_conf 076531899708999623334-7841799982275----58998732778988999999999986188829980068763
Q gi|254781215|r 307 NREPCPDPYAPLIMGCDIAEE-GGDNTVVVLRRGP----VIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGA 381 (511)
Q Consensus 307 ~r~~~~~~~~~~viGvDVAr~-G~D~svi~~r~G~----~v~~~~~~~~~d~~~~a~~i~~~~~~~~~~~i~iD~~GvG~ 381 (511)
..+..|.++..+++|||||++ |.|.|||.+.+-. ........+..++..++..+..++..|++..++|+.++.|.
T Consensus 50 ~iwe~P~~g~~YvigvD~A~G~g~DyS~i~V~Dvt~~~~~qVA~~r~n~i~p~~~a~ii~~i~~~Yn~a~v~vE~Nn~G~ 129 (232)
T 3c6a_A 50 YQFEKPKEGRKYVATLDCSEGRGQDYHALQIIDITEFPYKQVAVYHSNTTSHFILPDIVFKYLMMYNECPVYIELNSTGV 129 (232)
T ss_dssp EESSCCCTTCCEEEEEECCCSSSSCCEEEEEEECSSSSEEEEEEEEESCCCTTTHHHHHHHHHHHTTSCCEEEBCSHHHH
T ss_pred EEEECCCCCCEEEEEEECCCCCCCCCCEEEEEECCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCHH
T ss_conf 89936899984999997478768887879999767987148999740366878999999999987055739999778679
Q ss_pred HHHHHHH-HCCCE-EEEECCCCCCCCHHHH--HHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHCCCEEEECCCCEEEEE
Q ss_conf 6889898-64982-7984277776640255--22799999999999970899-981899999857967998799849998
Q gi|254781215|r 382 RTCDYLE-MLGYH-VYRVLGQKRAVDLEFC--RNRRTELHVKMADWLEFASL-INHSGLIQNLKSLKSFIVPNTGELAIE 456 (511)
Q Consensus 382 gV~d~L~-~~g~~-v~~v~~~~~~~~~~~y--~N~rae~~~~~re~l~~g~l-~~d~~l~~el~~~~~~~~~~~gki~ie 456 (511)
++++.|. +.+++ +.. .+..+.... .+.|..+.-+++++|+.+.+ +++..+++||.+-- ..+|+..-
T Consensus 130 ~v~~~l~~~~~Y~Nl~~----~~~~~~Gf~TT~~sK~~~~~~Lk~lie~~~l~i~s~~lI~EL~tFv----~~~gs~~A- 200 (232)
T 3c6a_A 130 SIAKSLAMDLEYDNIIC----DSFIDLGMKQSKRSKAMGCSALKDLIEKDKLIINHKGTIQELRTFS----EKGVSWAA- 200 (232)
T ss_dssp HHHHHHHHTSCCCCBCC----SBTTBSSBCCCHHHHHHHHHHHHHHHHTTCEECCCHHHHHHHHHCB----SCC------
T ss_pred HHHHHHHHHHCCCCCCC----CCCCCCCCEECCCCHHHHHHHHHHHHHHCCEEECCHHHHHHHHHEE----ECCCEECC-
T ss_conf 99999988744773024----2445667443420199999999999971854988899998846316----43977646-
Q ss_pred ECHHHCCCCCCHHHHHHHH
Q ss_conf 4125489998989999999
Q gi|254781215|r 457 SKRVKGAKSTDYSDGLMYT 475 (511)
Q Consensus 457 ~Kkkrg~~SPD~ADAl~l~ 475 (511)
.-|.+=|+-=|++|+
T Consensus 201 ----~~G~HDDlVMalaL~ 215 (232)
T 3c6a_A 201 ----EEGFHDDLVMSLVIF 215 (232)
T ss_dssp -------CCCHHHHHHHHH
T ss_pred ----CCCCCHHHHHHHHHH
T ss_conf ----899971999999999
No 4
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=98.82 E-value=9.2e-07 Score=59.86 Aligned_cols=157 Identities=10% Similarity=0.034 Sum_probs=86.2
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH
Q ss_conf 84589999999999987405655542101246502576597899999999999808996699980858999999999999
Q gi|254781215|r 50 APRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVS 129 (511)
Q Consensus 50 ~P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~~Q~~~ilw~Ei~ 129 (511)
-||++|.+++.....+. +..+.++.|.|||.+++.++.++.. .++.++++++|+..=+.+ ...++.
T Consensus 113 ~lrdyQ~eav~~~l~~~------------~~il~~pTGsGKT~i~~~i~~~~~~-~~~~k~Liivp~~~Lv~Q-~~~~~~ 178 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVNR------------RRILNLPTSAGRSLIQALLARYYLE-NYEGKILIIVPTTALTTQ-MADDFV 178 (282)
T ss_dssp CCCHHHHHHHHHHHHHS------------EEEECCCTTSCHHHHHHHHHHHHHH-HCSSEEEEECSSHHHHHH-HHHHHH
T ss_pred CCHHHHHHHHHHHHHCC------------CEEEECCCCCCHHHHHHHHHHHHHC-CCCCCEEEEECCHHHHHH-HHHHHH
T ss_conf 87199999999999749------------8299857889778999999997431-367508999797899999-999888
Q ss_pred HHHHHCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHCCCCCCEEEEECCHHCCCHHHHH
Q ss_conf 99985500013444322222233344432111235786169853035755610021202676149997111029978898
Q gi|254781215|r 130 KWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINL 209 (511)
Q Consensus 130 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ea~~G~h~~~~~lvI~DEAsgI~d~i~e 209 (511)
++....... -.......... ..........+.+.........+.+ +...++|+|||+.+....+.
T Consensus 179 ~~~~~~~~~-~~~i~~g~~~~---------~~~~~~~~i~i~t~qsl~~~~~~~~-----~~f~~VIiDEaH~~~a~~~~ 243 (282)
T 1rif_A 179 DYRLFSHAM-IKKIGGGASKD---------DKYKNDAPVVVGTWQTVVKQPKEWF-----SQFGMMMNDECHLATGKSIS 243 (282)
T ss_dssp HHTSCCGGG-EEECSTTCSST---------TCCCTTCSEEEECHHHHTTSCGGGG-----GGEEEEEEETGGGCCHHHHH
T ss_pred HHCCCCCCC-CEEEECCCCCC---------CCCCCCCEEEEEEEHHHHHCCHHHC-----CCCCEEEEECCCCCCCHHHH
T ss_conf 753675335-30330454465---------5334343699985055332122114-----78899999289677833099
Q ss_pred HHHHHHCCCCCCEEEEEECCCCCCCCHH
Q ss_conf 8888850799813899823899876556
Q gi|254781215|r 210 GILGFLTERNANRFWIMTSNPRRLSGKF 237 (511)
Q Consensus 210 ~i~~~Lt~~g~~~~~i~~~nP~~~~g~f 237 (511)
.+...+ .+++.++-++++|.+.....
T Consensus 244 ~i~~~~--~~~~~rlGlTaT~~~~~~~~ 269 (282)
T 1rif_A 244 SIISGL--NNCMFKFGLSGSLRDGKANI 269 (282)
T ss_dssp HHTTTC--TTCCEEEEECSSCCTTSTTH
T ss_pred HHHHHC--CCCCEEEEEEEECCCCCCCE
T ss_conf 999854--08796899985269987432
No 5
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=98.69 E-value=1.5e-06 Score=58.50 Aligned_cols=179 Identities=17% Similarity=0.110 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 66528866776421455777565557845899999999999874056555421012465025765978999999999998
Q gi|254781215|r 24 IKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMS 103 (511)
Q Consensus 24 ~~~~~~~~~~~~~~w~~~~~~~~~~~~P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~ 103 (511)
..+..+.+.+.-| .......||.||.++++.+.++..++.. |..|....|+|||.++..++...+.
T Consensus 159 ~~~~~~~~~~~~~-------~~~~~~~~R~yQ~~Ai~~~~~~~~~~~~-------r~li~~aTGSGKT~~a~~li~~ll~ 224 (590)
T 3h1t_A 159 IKDEDLDTLLSPY-------HHVSGYSPRYYQQIAINRAVQSVLQGKK-------RSLITMATGTGKTVVAFQISWKLWS 224 (590)
T ss_dssp CCGGGHHHHTCCC-------CCC----CCHHHHHHHHHHHHHHHTTCS-------EEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCC-------CCCCCCCCCHHHHHHHHHHHHHHHHCCC-------CEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 4667776541555-------4457998679999999999999983799-------6599889999789999999999998
Q ss_pred HC-------CCCEEEEEECCHHHHHHHHHHHHHHHHHHCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCC
Q ss_conf 08-------99669998085899999999999999985500013444322222233344432111235786169853035
Q gi|254781215|r 104 TR-------PGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTY 176 (511)
Q Consensus 104 ~~-------p~~kv~vtApt~~Q~~~ilw~Ei~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (511)
.+ ...++++.+|+..-+.+. ...... .+......+.. ..........+.+..+.
T Consensus 225 ~~~~~~~~~~~~rvl~l~dr~~L~~Q~--------~~~~~~--~~~~~~~~i~~---------~~~~~~~~~~~~t~q~l 285 (590)
T 3h1t_A 225 ARWNRTGDYRKPRILFLADRNVLVDDP--------KDKTFT--PFGDARHKIEG---------GKVVKSREIYFAIYQSI 285 (590)
T ss_dssp TTCCSSCSSSCCCEEEEEC-------------------CCT--TTCSSEEECCC-----------CCSSCSEEEEEGGGC
T ss_pred HCCCCCCCCCCCEEEEEECHHHHHHHH--------HHHHHH--HCCCCCEEEEC---------CCCCCCCCEEEEEEEEE
T ss_conf 411322345688699995369999989--------999974--13665402211---------44235663157766672
Q ss_pred CC--CCCCHHHHCCCCCCEEEEECCHHCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCC
Q ss_conf 75--561002120267614999711102997889888888507998138998238998765
Q gi|254781215|r 177 SE--ERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSG 235 (511)
Q Consensus 177 s~--~~~ea~~G~h~~~~~lvI~DEAsgI~d~i~e~i~~~Lt~~g~~~~~i~~~nP~~~~g 235 (511)
.. ..+....-+-.....++|+|||+-....-.......+....+..++-.+++|.+..+
T Consensus 286 ~~~~~~~~~~~~~~~~~~~lIIiDEaHr~~~~~~~~~~~il~~~~~a~~lGlTATP~~~~~ 346 (590)
T 3h1t_A 286 ASDERRPGLYKEFPQDFFDLIIIDECHRGSARDNSNWREILEYFEPAFQIGMTATPLREDN 346 (590)
T ss_dssp ------CCGGGGSCTTSCSEEEESCCC---------CHHHHHHSTTSEEEEEESSCSCTTT
T ss_pred HHHHHCHHHHHHCCCCCCEEEEEEHHHHHCCCCCHHHHHHHHHHHHHHEEECCCCCCCCCC
T ss_conf 0222011356542755516999604774032321157788876434451322446522367
No 6
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=98.52 E-value=1.8e-05 Score=51.79 Aligned_cols=156 Identities=10% Similarity=0.038 Sum_probs=83.6
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH
Q ss_conf 84589999999999987405655542101246502576597899999999999808996699980858999999999999
Q gi|254781215|r 50 APRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVS 129 (511)
Q Consensus 50 ~P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~~Q~~~ilw~Ei~ 129 (511)
-||++|.+++..+-.+. +..+.++.|.|||.+++.++.++... .+.++++++|+..-+.+. ..++.
T Consensus 113 ~~r~yQ~~ai~~~l~~~------------~~li~~pTGsGKTli~~~l~~~~~~~-~~~k~LiivP~~~Lv~Q~-~~~~~ 178 (510)
T 2oca_A 113 EPHWYQKDAVFEGLVNR------------RRILNLPTSAGRSLIQALLARYYLEN-YEGKILIIVPTTALTTQM-ADDFV 178 (510)
T ss_dssp CCCHHHHHHHHHHHHHS------------EEEEECCSTTTHHHHHHHHHHHHHHH-CSSEEEEEESSHHHHHHH-HHHHH
T ss_pred CCHHHHHHHHHHHHHCC------------CEEEEECCCCHHHHHHHHHHHHHHHC-CCCEEEEEECHHHHHHHH-HHHHH
T ss_conf 77799999999999779------------86999799807999999999998755-798599997949999999-99998
Q ss_pred HHHHHCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHCCCCCCEEEEECCHHCCCHHHHH
Q ss_conf 99985500013444322222233344432111235786169853035755610021202676149997111029978898
Q gi|254781215|r 130 KWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINL 209 (511)
Q Consensus 130 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ea~~G~h~~~~~lvI~DEAsgI~d~i~e 209 (511)
+.... +. .. ...+...... ...........+.+...... .+.. +. +...++|+|||+......+.
T Consensus 179 ~~~~~-~~--~~---v~~i~~~~~~----~~~~~~~~~i~i~t~qs~~~-~~~~---~~-~~~~~vIiDE~H~~~~~~~~ 243 (510)
T 2oca_A 179 DYRLF-SH--AM---IKKIGGGASK----DDKYKNDAPVVVGTWQTVVK-QPKE---WF-SQFGMMMNDECHLATGKSIS 243 (510)
T ss_dssp HTTSS-CG--GG---EEECGGGCCT----TGGGCTTCSEEEEEHHHHTT-SCGG---GG-GGEEEEEEETGGGCCHHHHH
T ss_pred HHCCC-CC--CC---EEEECCCCCC----CCCCCCCCCEEEEECHHHHH-HHHH---HH-CCCCEEEEEHHHHHHHHHHH
T ss_conf 75567-65--43---1342265334----42025676099984323333-2676---51-35787997423320123588
Q ss_pred HHHHHHCCCCCCEEEEEECCCCCCCCH
Q ss_conf 888885079981389982389987655
Q gi|254781215|r 210 GILGFLTERNANRFWIMTSNPRRLSGK 236 (511)
Q Consensus 210 ~i~~~Lt~~g~~~~~i~~~nP~~~~g~ 236 (511)
.+...+. .....+-+++++.+....
T Consensus 244 ~il~~~~--~~~~~l~~T~t~~~~~~~ 268 (510)
T 2oca_A 244 SIISGLN--NCMFKFGLSGSLRDGKAN 268 (510)
T ss_dssp HHGGGCT--TCCEEEEEESCGGGCSSC
T ss_pred HHHHHHC--CCCHHEEEEECCCCCCCE
T ss_conf 9988751--100011443113587530
No 7
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding protein; HET: DNA; 2.40A {Archaeoglobus fulgidus dsm 4304} SCOP: c.37.1.19
Probab=98.44 E-value=1.9e-06 Score=57.86 Aligned_cols=142 Identities=13% Similarity=0.033 Sum_probs=74.7
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH
Q ss_conf 78458999999999998740565554210124650257659789999999999980899669998085899999999999
Q gi|254781215|r 49 SAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEV 128 (511)
Q Consensus 49 ~~P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~~Q~~~ilw~Ei 128 (511)
..||+||.+++..+.. + .+..|.+.-|.|||.++..++. .-+.++++++|+..-+.+ ...++
T Consensus 92 ~~Lr~yQ~eai~~~~~----~--------~~gll~~pTGsGKT~ial~~i~-----~~~~~~LvvvP~~~L~~Q-w~~~~ 153 (237)
T 2fz4_A 92 ISLRDYQEKALERWLV----D--------KRGCIVLPTGSGKTHVAMAAIN-----ELSTPTLIVVPTLALAEQ-WKERL 153 (237)
T ss_dssp CCCCHHHHHHHHHHTT----T--------SEEEEEESSSTTHHHHHHHHHH-----HSCSCEEEEESSHHHHHH-HHHHH
T ss_pred CCCCHHHHHHHHHHHH----C--------CCCEEEECCCCCHHHHHHHHHH-----HHCCCEEEEECCHHHHHH-HHHHH
T ss_conf 9859999999999996----8--------9969993899988899999999-----848988999774788778-99999
Q ss_pred HHHHHHCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHCCCCCCEEEEECCHHCCCHHHH
Q ss_conf 99998550001344432222223334443211123578616985303575561002120267614999711102997889
Q gi|254781215|r 129 SKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVIN 208 (511)
Q Consensus 129 ~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ea~~G~h~~~~~lvI~DEAsgI~d~i~ 208 (511)
.++.... ...+. +. ..........+.... ...++.+ .....++|+|||+-++...|
T Consensus 154 ~~~~~~~----------~~~~~-g~--------~~~~~~i~i~t~~s~-~~~~~~~----~~~f~lvIiDEaH~l~~~~~ 209 (237)
T 2fz4_A 154 GIFGEEY----------VGEFS-GR--------IKELKPLTVSTYDSA-YVNAEKL----GNRFMLLIFDEVHHLPAESY 209 (237)
T ss_dssp GGGCGGG----------EEEES-SS--------CBCCCSEEEEEHHHH-HHTHHHH----TTTCSEEEEECSSCCCTTTH
T ss_pred HHHCCCC----------CEEEC-CC--------CCCCCCCCCCHHHHH-HHHHHHH----CCCCCEEEEECCCCCCCHHH
T ss_conf 9736012----------31342-55--------344542101148999-8618862----78665899979730687799
Q ss_pred HHHHHHHCCCCCCEEEEEECCCCCCCC
Q ss_conf 888888507998138998238998765
Q gi|254781215|r 209 LGILGFLTERNANRFWIMTSNPRRLSG 235 (511)
Q Consensus 209 e~i~~~Lt~~g~~~~~i~~~nP~~~~g 235 (511)
..+... ..++..+.++++|.|..|
T Consensus 210 ~~i~~~---~~~~~rLgLTATP~R~Dg 233 (237)
T 2fz4_A 210 VQIAQM---SIAPFRLGLTATFEREDG 233 (237)
T ss_dssp HHHHHT---CCCSEEEEEEESCC----
T ss_pred HHHHHC---CCCCEEEEEECCCCCCCC
T ss_conf 999861---788829999228867898
No 8
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombination, hydrolase; 2.90A {Pyrococcus furiosus dsm 3638} SCOP: c.37.1.19 c.37.1.19
Probab=98.43 E-value=1.2e-06 Score=59.25 Aligned_cols=171 Identities=18% Similarity=0.086 Sum_probs=81.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHH
Q ss_conf 55784589999999999987405655542101246502576597899999999999808996699980858999999999
Q gi|254781215|r 47 GFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWA 126 (511)
Q Consensus 47 ~~~~P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~~Q~~~ilw~ 126 (511)
++..||+||.+++... .+. .+-+.++.|.|||..+..++.. .+.+.+.++++++||..-+.+. ..
T Consensus 6 ~~~~pr~yQ~~~~~~~----~~~---------n~ll~~pTG~GKT~~a~~~~~~-~~~~~~~~vlil~Pt~~L~~Q~-~~ 70 (494)
T 1wp9_A 6 DLIQPRIYQEVIYAKC----KET---------NCLIVLPTGLGKTLIAMMIAEY-RLTKYGGKVLMLAPTKPLVLQH-AE 70 (494)
T ss_dssp HHHCCCHHHHHHHHHG----GGS---------CEEEECCTTSCHHHHHHHHHHH-HHHHSCSCEEEECSSHHHHHHH-HH
T ss_pred CCCCCCHHHHHHHHHH----HCC---------CEEEEECCCCHHHHHHHHHHHH-HHHHCCCCEEEEECCHHHHHHH-HH
T ss_conf 8889999999999999----579---------9599979977299999999999-9985699199994849999999-99
Q ss_pred HHHHHHHHCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHCCCCCCEEEEECCHHCCCH-
Q ss_conf 9999998550001344432222223334443211123578616985303575561002120267614999711102997-
Q gi|254781215|r 127 EVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPD- 205 (511)
Q Consensus 127 Ei~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ea~~G~h~~~~~lvI~DEAsgI~d- 205 (511)
++.++....+.+-. .. .+..........-......+++.... .+.-...........++|+|||..+..
T Consensus 71 ~~~~~~~~~~~~v~-~~-------~g~~~~~~~~~~~~~~~i~v~t~~~l--~~~~~~~~~~~~~~~~vi~DE~h~~~~~ 140 (494)
T 1wp9_A 71 SFRRLFNLPPEKIV-AL-------TGEKSPEERSKAWARAKVIVATPQTI--ENDLLAGRISLEDVSLIVFDEAHRAVGN 140 (494)
T ss_dssp HHHHHBCSCGGGEE-EE-------CSCSCHHHHHHHHHHCSEEEECHHHH--HHHHHTTSCCTTSCSEEEEETGGGCSTT
T ss_pred HHHHHHCCCCCEEE-EE-------ECCCCHHHHHHHHHCCCEEEEEEEEE--HHHHHCCCCCCCCCCCEEEEEHHHHCCC
T ss_conf 99997467997899-99-------78989899999973267069974131--1255414200045673378760221243
Q ss_pred HHHHHHHHH-HCCCCCCEEEEEECCCCCCCCHHHHHHH
Q ss_conf 889888888-5079981389982389987655676530
Q gi|254781215|r 206 VINLGILGF-LTERNANRFWIMTSNPRRLSGKFYEIFN 242 (511)
Q Consensus 206 ~i~e~i~~~-Lt~~g~~~~~i~~~nP~~~~g~fy~~~~ 242 (511)
..+..+.-. .........+..+++|......+.+.+.
T Consensus 141 ~~~~~~~~~~~~~~~~~~~l~lsatp~~~~~~~~~~~~ 178 (494)
T 1wp9_A 141 YAYVFIAREYKRQAKNPLVIGLTASPGSTPEKIMEVIN 178 (494)
T ss_dssp CHHHHHHHHHHHHCSSCCEEEEESCSCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 27889999998636666488751476521668999997
No 9
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=98.31 E-value=1.8e-05 Score=51.69 Aligned_cols=68 Identities=15% Similarity=0.101 Sum_probs=47.1
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH
Q ss_conf 84589999999999987405655542101246502576597899999999999808996699980858999999999999
Q gi|254781215|r 50 APRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVS 129 (511)
Q Consensus 50 ~P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~~Q~~~ilw~Ei~ 129 (511)
.|++||++++..|-.. . .+-|.+..|.|||.++... +..++. .+.++++++||..=+.++ +.+++
T Consensus 86 ~l~~~Q~~ai~~l~~g----~--------~vlv~apTGSGKT~va~~~-i~~~l~-~~~rvl~l~Pt~~L~~Q~-~~~~~ 150 (1010)
T 2xgj_A 86 TLDPFQDTAISCIDRG----E--------SVLVSAHTSAGKTVVAEYA-IAQSLK-NKQRVIYTSPIKALSNQK-YRELL 150 (1010)
T ss_dssp CCCHHHHHHHHHHHHT----C--------EEEEECCTTSCHHHHHHHH-HHHHHH-TTCEEEEEESSHHHHHHH-HHHHH
T ss_pred CCCHHHHHHHHHHHCC----C--------CEEEEECCCCHHHHHHHHH-HHHHHH-CCCCEEEECCHHHHHHHH-HHHHH
T ss_conf 9899999999999839----9--------9999908986599999999-999996-099599998969999999-99999
Q ss_pred HHH
Q ss_conf 999
Q gi|254781215|r 130 KWL 132 (511)
Q Consensus 130 k~~ 132 (511)
+..
T Consensus 151 ~~~ 153 (1010)
T 2xgj_A 151 AEF 153 (1010)
T ss_dssp HHH
T ss_pred HHC
T ss_conf 755
No 10
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=98.22 E-value=1.4e-05 Score=52.40 Aligned_cols=68 Identities=15% Similarity=0.138 Sum_probs=47.8
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH
Q ss_conf 84589999999999987405655542101246502576597899999999999808996699980858999999999999
Q gi|254781215|r 50 APRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVS 129 (511)
Q Consensus 50 ~P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~~Q~~~ilw~Ei~ 129 (511)
.|++||++++..+-. +. -+-|.+..|.|||.++...++-.+. .+.++++++||..=+.++ +.++.
T Consensus 184 ~l~~~Q~~ai~~i~~----g~--------dvlv~ApTGSGKTlv~~l~i~~~l~--~~~r~l~l~Ptr~La~Q~-~~~l~ 248 (1108)
T 3l9o_A 184 TLDPFQDTAISCIDR----GE--------SVLVSAHTSAGKTVVAEYAIAQSLK--NKQRVIYTSPIKALSNQK-YRELL 248 (1108)
T ss_dssp CCCHHHHHHHHHHTT----TC--------CEEEECCSSSHHHHHHHHHHHHHHH--TTCEEEEEESSHHHHHHH-HHHHH
T ss_pred CCCHHHHHHHHHHHH----CC--------CEEEECCCCCHHHHHHHHHHHHHHH--HCCEEEEECCHHHHHHHH-HHHHH
T ss_conf 989999999999981----99--------9999808986599999999999996--199099988979999999-99999
Q ss_pred HHH
Q ss_conf 999
Q gi|254781215|r 130 KWL 132 (511)
Q Consensus 130 k~~ 132 (511)
+..
T Consensus 249 ~~~ 251 (1108)
T 3l9o_A 249 AEF 251 (1108)
T ss_dssp HHT
T ss_pred HHC
T ss_conf 745
No 11
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=98.20 E-value=1.4e-05 Score=52.41 Aligned_cols=154 Identities=17% Similarity=0.172 Sum_probs=83.0
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHH
Q ss_conf 45899999999999874056555421012465025765978999999999998089966999808589999999999999
Q gi|254781215|r 51 PRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSK 130 (511)
Q Consensus 51 P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~~Q~~~ilw~Ei~k 130 (511)
|-.=|.+++..+..+.. .-+.+.+.||=|||+++..++-. -..+|+||||+...+..+ |.-...
T Consensus 176 ~t~~Q~~~l~~l~~~~~----------~~~vitAdRGRGKSaalGla~a~-----~~~~i~VTAP~~~~v~~l-f~~a~~ 239 (671)
T 2zpa_A 176 PQPEQQQLLKQLMTMPP----------GVAAVTAARGRGKSALAGQLISR-----IAGRAIVTAPAKASTDVL-AQFAGE 239 (671)
T ss_dssp CCHHHHHHHHHHTTCCS----------EEEEEEECTTSSHHHHHHHHHHH-----SSSCEEEECSSCCSCHHH-HHHHGG
T ss_pred CCHHHHHHHHHHHHCCC----------CCEEEECCCCCCHHHHHHHHHHH-----HCCCEEEECCCHHHHHHH-HHHCCC
T ss_conf 85999999999984367----------73587679998599999999995-----269789989998999999-997058
Q ss_pred HHHHCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHCCCCCCEEEEECCHHCCCHHHHHH
Q ss_conf 99855000134443222222333444321112357861698530357556100212026761499971110299788988
Q gi|254781215|r 131 WLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLG 210 (511)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ea~~G~h~~~~~lvI~DEAsgI~d~i~e~ 210 (511)
. .+--.|+.+-..... ..++|+|||+.||-.+-..
T Consensus 240 ----~----------------------------------------~~f~aPd~ll~~~~~-~dlLiVDEAAaIP~p~L~~ 274 (671)
T 2zpa_A 240 ----K----------------------------------------FRFIAPDALLASDEQ-ADWLVVDEAAAIPAPLLHQ 274 (671)
T ss_dssp ----G----------------------------------------CCBCCHHHHHHSCCC-CSEEEEETGGGSCHHHHHH
T ss_pred ----C----------------------------------------EEEECCHHHHCCCCC-CCEEEEECHHCCCHHHHHH
T ss_conf ----7----------------------------------------299881587536787-7889996241298999999
Q ss_pred HHHHHCCCCCCEEEEEECCCCCCCCH-HHHHHHCCCCCCEEEEECCCCCCCC--CHHHHHHHHHH
Q ss_conf 88885079981389982389987655-6765303524741798404336778--97789999975
Q gi|254781215|r 211 ILGFLTERNANRFWIMTSNPRRLSGK-FYEIFNKPLDDWKRFQIDTRTVEGI--DPSFHEGIIAR 272 (511)
Q Consensus 211 i~~~Lt~~g~~~~~i~~~nP~~~~g~-fy~~~~~~~~~w~~~~i~~~~~p~~--~~~~ie~~~~~ 272 (511)
+.. .-.+..+..|-+..--+|+ |--.|.+.-+.|..++ .+-|.. ..+=+|.|..+
T Consensus 275 l~~----~~~rvvfsTTihGYEGtGRgF~lkf~~~L~~~~~~~---L~~PIRwa~~DPlE~wl~~ 332 (671)
T 2zpa_A 275 LVS----RFPRTLLTTTVQGYEGTGRGFLLKFCARFPHLHRFE---LQQPIRWAQGCPLEKMVSE 332 (671)
T ss_dssp HHT----TSSEEEEEEEBSSTTBBCHHHHHHHHHTSTTCEEEE---CCSCSSSCTTCHHHHHHHH
T ss_pred HHH----HCCEEEEEEECCCCCCCCHHHHHHHHHHCHHHEEEE---CCCCCCCCCCCCHHHHHHH
T ss_conf 974----478589995147511546999999987470107986---6686317998978999988
No 12
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural genomics consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=98.15 E-value=2.1e-05 Score=51.35 Aligned_cols=74 Identities=20% Similarity=0.225 Sum_probs=54.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHH--CCCCEEEEEECCHHHHHHHH
Q ss_conf 5578458999999999998740565554210124650257659789999999999980--89966999808589999999
Q gi|254781215|r 47 GFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMST--RPGISVICLANSETQLKTTL 124 (511)
Q Consensus 47 ~~~~P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~--~p~~kv~vtApt~~Q~~~il 124 (511)
+|..|-+.|++++..+-.. + -+.|.++.|+|||......++-.+.. ..+.++++++||..-+.++.
T Consensus 48 g~~~ptpiQ~~ai~~il~g------~------dviv~apTGsGKT~~~~~~il~~~~~~~~~~~~~lil~Ptr~La~q~~ 115 (245)
T 3dkp_A 48 GFQMPTPIQMQAIPVMLHG------R------ELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIH 115 (245)
T ss_dssp TCCSCCHHHHHHHHHHHTT------C------CEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHCC------C------CEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHH
T ss_conf 9999999999999999779------9------889987999977589988988755420378846998588089864320
Q ss_pred HHHHHHHHH
Q ss_conf 999999998
Q gi|254781215|r 125 WAEVSKWLS 133 (511)
Q Consensus 125 w~Ei~k~~~ 133 (511)
.++.+...
T Consensus 116 -~~~~~~~~ 123 (245)
T 3dkp_A 116 -RELIKISE 123 (245)
T ss_dssp -HHHHHHTT
T ss_pred -HHHEECCC
T ss_conf -12000122
No 13
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=98.07 E-value=1.2e-05 Score=52.89 Aligned_cols=64 Identities=17% Similarity=0.122 Sum_probs=43.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHH
Q ss_conf 5578458999999999998740565554210124650257659789999999999980899669998085899999
Q gi|254781215|r 47 GFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKT 122 (511)
Q Consensus 47 ~~~~P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~~Q~~~ 122 (511)
+|..|.+||.+++.+. ..++ ..+-|.++.|.|||.++...++..+.. .+.++++++||..=+.+
T Consensus 20 g~~~l~~~Q~~ai~~~---~~~g--------~~~lv~aPTGsGKTlva~l~il~~l~~-~~~k~l~i~Pt~aL~~Q 83 (720)
T 2zj8_A 20 GIESFYPPQAEALKSG---ILEG--------KNALISIPTASGKTLIAEIAMVHRILT-QGGKAVYIVPLKALAEE 83 (720)
T ss_dssp TCCBCCHHHHHHHTTT---GGGT--------CEEEEECCGGGCHHHHHHHHHHHHHHH-HCSEEEEECSSGGGHHH
T ss_pred CCCCCCHHHHHHHHHH---HHCC--------CCEEEECCCCCHHHHHHHHHHHHHHHH-CCCCEEEECCHHHHHHH
T ss_conf 9999999999999999---9779--------979998099863999999999999996-79919998088999999
No 14
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=98.05 E-value=0.00012 Score=46.61 Aligned_cols=142 Identities=13% Similarity=0.024 Sum_probs=71.5
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH
Q ss_conf 84589999999999987405655542101246502576597899999999999808996699980858999999999999
Q gi|254781215|r 50 APRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVS 129 (511)
Q Consensus 50 ~P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~~Q~~~ilw~Ei~ 129 (511)
.||+||++++..+..+ . +..|.++-|.|||.++..++.. -+.++++++||..-+.+ .-.++.
T Consensus 93 ~Lr~yQ~eav~~~~~~----~--------~gvi~~pTGsGKT~ial~~i~~-----~~~~~LivvPt~~L~~Q-~~~~~~ 154 (472)
T 2fwr_A 93 SLRDYQEKALERWLVD----K--------RGCIVLPTGSGKTHVAMAAINE-----LSTPTLIVVPTLALAEQ-WKERLG 154 (472)
T ss_dssp CBCHHHHHHHHHHTTT----T--------EEEEECCTTSCHHHHHHHHHHH-----HCSCEEEEESSHHHHHH-HHHHGG
T ss_pred CCCHHHHHHHHHHHHC----C--------CCEEECCCCCCHHHHHHHHHHH-----HCCCEEEEECCHHHHHH-HHHHHH
T ss_conf 9799999999999967----9--------9899978998699999999998-----48999999787999999-999998
Q ss_pred HHHHHCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHCCCCCCEEEEECCHHCCCHHHHH
Q ss_conf 99985500013444322222233344432111235786169853035755610021202676149997111029978898
Q gi|254781215|r 130 KWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINL 209 (511)
Q Consensus 130 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ea~~G~h~~~~~lvI~DEAsgI~d~i~e 209 (511)
++. ... .. .+. .. ........+.+..... ...+. + .....++|+||++.++...+.
T Consensus 155 ~~~----~~~-----v~-~~~----g~-----~~~~~~i~i~t~~~~~-~~~~~---~-~~~~~lvI~DE~h~~~~~~~~ 210 (472)
T 2fwr_A 155 IFG----EEY-----VG-EFS----GR-----IKELKPLTVSTYDSAY-VNAEK---L-GNRFMLLIFDEVHHLPAESYV 210 (472)
T ss_dssp GGC----GGG-----EE-EBS----SS-----CBCCCSEEEEEHHHHH-HTHHH---H-TTTCSEEEEETGGGTTSTTTH
T ss_pred HCC----CCE-----EE-EEC----CC-----CCCCCEEEEEEEHHHH-HCHHH---H-CCCCCEEEEECHHHCCCHHHH
T ss_conf 527----844-----88-852----65-----3445508999616665-35786---4-236678995220200100135
Q ss_pred HHHHHHCCCCCCEEEEEECCCCCCCCH
Q ss_conf 888885079981389982389987655
Q gi|254781215|r 210 GILGFLTERNANRFWIMTSNPRRLSGK 236 (511)
Q Consensus 210 ~i~~~Lt~~g~~~~~i~~~nP~~~~g~ 236 (511)
.+.-. ...+..+..+++|.+..+.
T Consensus 211 ~i~~~---~~~~~~l~ltaT~~r~~~~ 234 (472)
T 2fwr_A 211 QIAQM---SIAPFRLGLTATFEREDGR 234 (472)
T ss_dssp HHHHT---CCCSEEEEEESCCCCTTSG
T ss_pred HHHHC---CCCCEEEEEEEEEECCCCH
T ss_conf 65422---5400476310013035303
No 15
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-binding, nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=98.03 E-value=1.1e-05 Score=53.02 Aligned_cols=64 Identities=16% Similarity=0.141 Sum_probs=44.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHH
Q ss_conf 5578458999999999998740565554210124650257659789999999999980899669998085899999
Q gi|254781215|r 47 GFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKT 122 (511)
Q Consensus 47 ~~~~P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~~Q~~~ 122 (511)
++..|.+||.+++..+ ..++ ..+.|.++.|.|||.++...++-.+. ..+.++++++||..=+.+
T Consensus 27 g~~~l~p~Q~~ai~~~---l~~g--------~nvlv~aPTGsGKTl~~~l~il~~l~-~~~~k~l~i~PtraL~~q 90 (715)
T 2va8_A 27 GIKKLNPPQTEAVKKG---LLEG--------NRLLLTSPTGSGKTLIAEMGIISFLL-KNGGKAIYVTPLRALTNE 90 (715)
T ss_dssp SCCBCCHHHHHHHHTT---TTTT--------CCEEEECCTTSCHHHHHHHHHHHHHH-HSCSEEEEECSCHHHHHH
T ss_pred CCCCCCHHHHHHHHHH---HHCC--------CCEEEECCCCCHHHHHHHHHHHHHHH-HCCCEEEEECCHHHHHHH
T ss_conf 9999999999999999---9689--------96999829985499999999999998-679919998188999999
No 16
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=98.03 E-value=2.8e-05 Score=50.57 Aligned_cols=62 Identities=16% Similarity=0.039 Sum_probs=42.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHH
Q ss_conf 5578458999999999998740565554210124650257659789999999999980899669998085899999
Q gi|254781215|r 47 GFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKT 122 (511)
Q Consensus 47 ~~~~P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~~Q~~~ 122 (511)
++..|.+||++++..+.+ +. .+.|.++.|.|||.++...++-.+. .+.++++++||..=+.+
T Consensus 22 Gi~~L~p~Q~~ai~~i~~----g~--------nvlv~aPTGsGKTlia~l~il~~~~--~~~r~l~i~P~~aL~~q 83 (702)
T 2p6r_A 22 GIEELFPPQAEAVEKVFS----GK--------NLLLAMPTAAGKTLLAEMAMVREAI--KGGKSLYVVPLRALAGE 83 (702)
T ss_dssp ---CCCCCCHHHHHHHTT----CS--------CEEEECSSHHHHHHHHHHHHHHHHH--TTCCEEEEESSHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHC----CC--------CEEEECCCCCHHHHHHHHHHHHHHH--CCCCEEEECCHHHHHHH
T ss_conf 999999999999999983----99--------9999839985399999999999986--39979999188999999
No 17
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=97.94 E-value=0.00026 Score=44.44 Aligned_cols=153 Identities=12% Similarity=0.051 Sum_probs=80.3
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHH-HHH
Q ss_conf 4589999999999987405655542101246502576597899999999999808996699980858999999999-999
Q gi|254781215|r 51 PRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWA-EVS 129 (511)
Q Consensus 51 P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~~Q~~~ilw~-Ei~ 129 (511)
-+++|++.++-+.....++. .+.++-.=|.|||..+..++.......+..+++|++|+. +..- |. |+.
T Consensus 38 L~~~Q~~gv~~~~~~~~~~~--------g~iLADe~GlGKT~~ai~~~~~~~~~~~~~~~LIV~P~s--l~~q-W~~Ei~ 106 (500)
T 1z63_A 38 LRPYQIKGFSWMRFMNKLGF--------GICLADDMGLGKTLQTIAVFSDAKKENELTPSLVICPLS--VLKN-WEEELS 106 (500)
T ss_dssp CCHHHHHHHHHHHHHHHTTC--------CEEECCCTTSCHHHHHHHHHHHHHHTTCCSSEEEEECST--THHH-HHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCCC--------CEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEECHH--HHHH-HHHHHH
T ss_conf 70999999999998253799--------889870896519899999999999848999789998689--9999-999999
Q ss_pred HHHHHCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHCCCCCCEEEEECCHHCCCHHHHH
Q ss_conf 99985500013444322222233344432111235786169853035755610021202676149997111029978898
Q gi|254781215|r 130 KWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINL 209 (511)
Q Consensus 130 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ea~~G~h~~~~~lvI~DEAsgI~d~i~e 209 (511)
+|......... . .+... ........++...... ..... .+.....++|+|||+.+......
T Consensus 107 k~~~~~~v~~~-~------------~~~~~--~~~~~~~iii~~~~~~-~~~~~---~~~~~~~~vI~DEaH~~~~~~~~ 167 (500)
T 1z63_A 107 KFAPHLRFAVF-H------------EDRSK--IKLEDYDIILTTYAVL-LRDTR---LKEVEWKYIVIDEAQNIKNPQTK 167 (500)
T ss_dssp HHCTTSCEEEC-S------------SSTTS--CCGGGSSEEEEEHHHH-TTCHH---HHTCCEEEEEEETGGGGSCTTSH
T ss_pred HHCCCCEEEEE-C------------CCHHH--HHHCCCCEEEEEHHHH-HHHHH---HHHCCCCEEEEEHHHHHCCCHHH
T ss_conf 97798758751-4------------85134--2003587899843666-65667---65156437876143322130267
Q ss_pred HHHHHHCCCCCCEEEEEECCCCCCC
Q ss_conf 8888850799813899823899876
Q gi|254781215|r 210 GILGFLTERNANRFWIMTSNPRRLS 234 (511)
Q Consensus 210 ~i~~~Lt~~g~~~~~i~~~nP~~~~ 234 (511)
....... ..++..|+++++|..+.
T Consensus 168 ~~~~~~~-~~~~~rllLTgTP~~n~ 191 (500)
T 1z63_A 168 IFKAVKE-LKSKYRIALTGTPIENK 191 (500)
T ss_dssp HHHHHHT-SCEEEEEEECSSCSTTC
T ss_pred HHHHHHH-HCCCEEEEEECCCCCCC
T ss_conf 8888874-20574798511734587
No 18
>3b6e_A Interferon-induced helicase C domain-containing protein 1; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, structural genomics; 1.60A {Homo sapiens}
Probab=97.92 E-value=6.9e-06 Score=54.34 Aligned_cols=70 Identities=17% Similarity=0.119 Sum_probs=50.5
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHH----CCCCEEEEEECCHHHHHHHHHH
Q ss_conf 458999999999998740565554210124650257659789999999999980----8996699980858999999999
Q gi|254781215|r 51 PRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMST----RPGISVICLANSETQLKTTLWA 126 (511)
Q Consensus 51 P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~----~p~~kv~vtApt~~Q~~~ilw~ 126 (511)
+|+||.|++..+.++ ..+.|.++.|.|||.++..++...+.. .+..++++++|+..-+.+. +.
T Consensus 34 lr~~Q~eai~~~~~~------------~n~iv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lvv~p~~~L~~q~-~~ 100 (216)
T 3b6e_A 34 LRPYQMEVAQPALEG------------KNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQL-FR 100 (216)
T ss_dssp CCHHHHHHHHHHHTT------------CCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHH-HH
T ss_pred CCHHHHHHHHHHHHC------------CCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHH-HH
T ss_conf 899999999999958------------99899918998489999999999987321236786089980819999999-99
Q ss_pred HHHHHHH
Q ss_conf 9999998
Q gi|254781215|r 127 EVSKWLS 133 (511)
Q Consensus 127 Ei~k~~~ 133 (511)
+..+...
T Consensus 101 ~~~~~~~ 107 (216)
T 3b6e_A 101 KEFQPFL 107 (216)
T ss_dssp HTHHHHH
T ss_pred HHHHHHC
T ss_conf 9998720
No 19
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, hydrolase; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.92 E-value=6.7e-05 Score=48.12 Aligned_cols=139 Identities=18% Similarity=0.173 Sum_probs=79.3
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH
Q ss_conf 84589999999999987405655542101246502576597899999999999808996699980858999999999999
Q gi|254781215|r 50 APRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVS 129 (511)
Q Consensus 50 ~P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~~Q~~~ilw~Ei~ 129 (511)
+..+.|++++..+..+. -+.|..|=|+|||+++..++-.+-. .+.+|+++|||-.-++.+ .|..
T Consensus 189 ~l~~~Q~~Av~~~~~~~------------~~~i~G~aGTGKTt~l~~i~~~~~~--~~~~v~~~ApTgkAA~~L--~e~~ 252 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGHR------------LVVLTGGPGTGKSTTTKAVADLAES--LGLEVGLCAPTGKAARRL--GEVT 252 (574)
T ss_dssp TCCHHHHHHHHHHTTCS------------EEEEECCTTSCHHHHHHHHHHHHHH--TTCCEEEEESSHHHHHHH--HHHH
T ss_pred CCCHHHHHHHHHHHCCC------------EEEEECCCCCHHHHHHHHHHHHHHH--CCCEEEEECCHHHHHHHH--HHHH
T ss_conf 77899999999970598------------8999899860099999999999986--798499878729999999--8742
Q ss_pred HHHHHCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHCCCCCCEEEEECCHHCCCHHHHH
Q ss_conf 99985500013444322222233344432111235786169853035755610021202676149997111029978898
Q gi|254781215|r 130 KWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINL 209 (511)
Q Consensus 130 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ea~~G~h~~~~~lvI~DEAsgI~d~i~e 209 (511)
. ..+..+... +...... + .....++ ....++|+||||.|+...+.
T Consensus 253 ---~---------~~a~Tih~~----------L~~~~~~-~----~~~~~~~--------~~~dvlIIDEaSMv~~~~~~ 297 (574)
T 3e1s_A 253 ---G---------RTASTVHRL----------LGYGPQG-F----RHNHLEP--------APYDLLIVDEVSMMGDALML 297 (574)
T ss_dssp ---T---------SCEEEHHHH----------TTEETTE-E----SCSSSSC--------CSCSEEEECCGGGCCHHHHH
T ss_pred ---C---------CCHHHHHHH----------HCCCCCC-C----CCCCCCC--------CCCCEEEEECCCCCHHHHHH
T ss_conf ---8---------773889998----------6059763-2----1011576--------65868999266622399999
Q ss_pred HHHHHHCCCCCCEEEEEECCC-----CCCCCHHHHHHH
Q ss_conf 888885079981389982389-----987655676530
Q gi|254781215|r 210 GILGFLTERNANRFWIMTSNP-----RRLSGKFYEIFN 242 (511)
Q Consensus 210 ~i~~~Lt~~g~~~~~i~~~nP-----~~~~g~fy~~~~ 242 (511)
.+..++. .+.+ ++..|-| -+....|.+...
T Consensus 298 ~Ll~a~~-~g~r--lIlvGD~~QLppV~~G~~~~~l~~ 332 (574)
T 3e1s_A 298 SLLAAVP-PGAR--VLLVGDTDQLPPVDAGLPLLALAQ 332 (574)
T ss_dssp HHHTTSC-TTCE--EEEEECTTSCCCSSSCCHHHHHHH
T ss_pred HHHHHCC-CCCE--EEEECCHHHCCCCCCCCHHHHHHH
T ss_conf 9986453-6887--985068675477556847898851
No 20
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=97.87 E-value=0.00078 Score=41.42 Aligned_cols=147 Identities=22% Similarity=0.163 Sum_probs=76.4
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHH--CCCCEEEEEECCHHHHHHHHHHHH
Q ss_conf 458999999999998740565554210124650257659789999999999980--899669998085899999999999
Q gi|254781215|r 51 PRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMST--RPGISVICLANSETQLKTTLWAEV 128 (511)
Q Consensus 51 P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~--~p~~kv~vtApt~~Q~~~ilw~Ei 128 (511)
..+||++++.....+. =+.|.+|=|+|||+++..++.+++.. .++.+|+++|||-.-+..+. ..+
T Consensus 150 ~~~~Q~~Av~~al~~~------------~~lI~GgpGTGKTtti~~~i~~l~~~~~~~~~~Ill~ApTgkAa~~L~-e~~ 216 (608)
T 1w36_D 150 EINWQKVAAAVALTRR------------ISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLT-ESL 216 (608)
T ss_dssp SCCHHHHHHHHHHTBS------------EEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHH-HHH
T ss_pred CCHHHHHHHHHHHCCC------------EEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHH-HHH
T ss_conf 9889999999997099------------089993899729999999999999974157984999948399999999-998
Q ss_pred HHHHHHCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHCCCCCCEEEEECCHHCCCHHHH
Q ss_conf 99998550001344432222223334443211123578616985303575561002120267614999711102997889
Q gi|254781215|r 129 SKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVIN 208 (511)
Q Consensus 129 ~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ea~~G~h~~~~~lvI~DEAsgI~d~i~ 208 (511)
.+-......... ..... .......+..+....... .+. .+. .+-....++++||++.++...+
T Consensus 217 ~~~~~~i~~~~~---~~~~~---~~~~~t~h~ll~~~~~~~-----~~~-~~~-----~~~~~~~~~ivDE~sm~~~~~~ 279 (608)
T 1w36_D 217 GKALRQLPLTDE---QKKRI---PEDASTLHRLLGAQPGSQ-----RLR-HHA-----GNPLHLDVLVVDEASMIDLPMM 279 (608)
T ss_dssp THHHHHSSCCSC---CCCSC---SCCCBTTTSCC-----------------CT-----TSCCSCSEEEECSGGGCBHHHH
T ss_pred HHHHHHCCCCCH---HHHHC---CCHHHHHHHHHHCCCCCH-----HHH-HHH-----HHHHHHHHHHHHHHHHHHHHHH
T ss_conf 767740462200---33322---321556999974165303-----667-656-----4111223677678865419988
Q ss_pred HHHHHHHCCCCCCEEEEEECCC
Q ss_conf 8888885079981389982389
Q gi|254781215|r 209 LGILGFLTERNANRFWIMTSNP 230 (511)
Q Consensus 209 e~i~~~Lt~~g~~~~~i~~~nP 230 (511)
..+..++.. +.+. +..+-+
T Consensus 280 ~~~~~a~~~-~~~l--~l~gD~ 298 (608)
T 1w36_D 280 SRLIDALPD-HARV--IFLGDR 298 (608)
T ss_dssp HHHHHTCCT-TCEE--EEEECT
T ss_pred HHHHHHHHC-CCEE--EEECCH
T ss_conf 778776205-6479--983330
No 21
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural genomics consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=97.87 E-value=0.00013 Score=46.24 Aligned_cols=78 Identities=18% Similarity=0.122 Sum_probs=57.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCC-CCEEEEEECCHHHHHHHH
Q ss_conf 5557845899999999999874056555421012465025765978999999999998089-966999808589999999
Q gi|254781215|r 46 EGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRP-GISVICLANSETQLKTTL 124 (511)
Q Consensus 46 ~~~~~P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p-~~kv~vtApt~~Q~~~il 124 (511)
.+|.-|-+.|++.+..+-. + + -+.|.|..|+|||.....-++..+...+ ..++++.+||..-+.++
T Consensus 61 ~G~~~pt~IQ~~aip~il~----g--~------dvlv~A~TGSGKTla~~lp~l~~~~~~~~~~~~lil~PtreLa~q~- 127 (249)
T 3ber_A 61 LGWTKPTKIQIEAIPLALQ----G--R------DIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQI- 127 (249)
T ss_dssp TTCCSCCHHHHHHHHHHHT----T--C------CEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHH-
T ss_pred CCCCCCCHHHHHHHHHHHC----C--C------CEEEECCCCCCCCEEEECCCCCCCCCCCCCCEEEEECCCHHHHHHH-
T ss_conf 7999999999999999977----9--9------9899827999661389712222324467774499977758987666-
Q ss_pred HHHHHHHHHHCH
Q ss_conf 999999998550
Q gi|254781215|r 125 WAEVSKWLSLLP 136 (511)
Q Consensus 125 w~Ei~k~~~~~~ 136 (511)
...+.+......
T Consensus 128 ~~~~~~l~~~~~ 139 (249)
T 3ber_A 128 SEQFEALGSSIG 139 (249)
T ss_dssp HHHHHHHHGGGT
T ss_pred HHHHHHHCCCCC
T ss_conf 677664303678
No 22
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=97.86 E-value=0.00029 Score=44.14 Aligned_cols=160 Identities=13% Similarity=0.099 Sum_probs=79.7
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHH-HHH
Q ss_conf 8458999999999998740565554210124650257659789999999999980899669998085899999999-999
Q gi|254781215|r 50 APRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLW-AEV 128 (511)
Q Consensus 50 ~P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~~Q~~~ilw-~Ei 128 (511)
.|.+.|.+++..+... + ..|+-++--=|.|||.-+..++...+...+..+++|++|+.-. .- | .|+
T Consensus 153 ~l~phQ~~~~~~~l~~-------~---~~r~LLADevGlGKTiea~~il~~l~~~g~~~r~LIvvP~sL~--~Q-W~~El 219 (968)
T 3dmq_A 153 SLIPHQLNIAHDVGRR-------H---APRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPETLQ--HQ-WLVEM 219 (968)
T ss_dssp CCCHHHHHHHHHHHHS-------S---SCEEEECCCTTSCHHHHHHHHHHHHHHTSSCCCEEEECCTTTH--HH-HHHHH
T ss_pred CCCHHHHHHHHHHHHC-------C---CCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHH--HH-HHHHH
T ss_conf 8775899999999847-------8---9999988789811999999999999983899949999887889--99-99999
Q ss_pred HHHHHHCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHCCCCCCEEEEECCHHCCCH---
Q ss_conf 99998550001344432222223334443211123578616985303575561002120267614999711102997---
Q gi|254781215|r 129 SKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPD--- 205 (511)
Q Consensus 129 ~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ea~~G~h~~~~~lvI~DEAsgI~d--- 205 (511)
.++...... .............. ..........++....-..+.....-+......++|+|||+.+..
T Consensus 220 ~~~f~~~~~-----~~~~~~~~~~~~~~----~~~~~~~~~vi~s~~~l~~~~~~~~~l~~~~~dlvIvDEAH~l~n~~~ 290 (968)
T 3dmq_A 220 LRRFNLRFA-----LFDDERYAEAQHDA----YNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSED 290 (968)
T ss_dssp HHHSCCCCE-----ECCHHHHHHHHHTT----CSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTT
T ss_pred HHHCCCCEE-----EEECCCHHHHHHHH----HHHHCCCCEEEEEHHHHHCCHHHHHHHHCCCCCEEEEECHHHHCCCCC
T ss_conf 997399869-----98246426676765----423105999997289984089999887357988899836665316664
Q ss_pred ---HHHHHHHHHHCCCCCCEEEEEECCCCCC
Q ss_conf ---8898888885079981389982389987
Q gi|254781215|r 206 ---VINLGILGFLTERNANRFWIMTSNPRRL 233 (511)
Q Consensus 206 ---~i~e~i~~~Lt~~g~~~~~i~~~nP~~~ 233 (511)
..+..+... +.. .+..++++++|..+
T Consensus 291 ~~s~~~~~~~~l-~~~-~~~~llLTaTP~~n 319 (968)
T 3dmq_A 291 APSREYQAIEQL-AEH-VPGVLLLTATPEQL 319 (968)
T ss_dssp BCCHHHHHHHHH-HTT-CSSEEESCSSCSSS
T ss_pred HHHHHHHHHHHH-HHC-CCEEEEEECCCCCC
T ss_conf 888999999987-530-46289841425778
No 23
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=97.83 E-value=0.00022 Score=44.90 Aligned_cols=74 Identities=19% Similarity=0.220 Sum_probs=54.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCC------CCEEEEEECCHHH
Q ss_conf 5557845899999999999874056555421012465025765978999999999998089------9669998085899
Q gi|254781215|r 46 EGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRP------GISVICLANSETQ 119 (511)
Q Consensus 46 ~~~~~P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p------~~kv~vtApt~~Q 119 (511)
.+|..|.+.|++.+..+-.. + -+-+.|..|+|||.....-++-.+...+ +.++++.+||...
T Consensus 74 ~g~~~pt~iQ~~aip~il~g------~------dvi~~a~TGsGKTlafllP~l~~l~~~~~~~~~~~~~~lil~PtreL 141 (434)
T 2db3_A 74 SGYKIPTPIQKCSIPVISSG------R------DLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTREL 141 (434)
T ss_dssp TTCCSCCHHHHHHHHHHHTT------C------CEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHH
T ss_pred CCCCCCCHHHHHHHHHHHCC------C------CEEEECCCCCCHHHHHHHHHHHHHHHCCCHHCCCCCEEEEECCCHHH
T ss_conf 79999999999999999759------9------88998899997899999999998642441010479749999287999
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999999999
Q gi|254781215|r 120 LKTTLWAEVSKWL 132 (511)
Q Consensus 120 ~~~ilw~Ei~k~~ 132 (511)
+..+ +.++.+..
T Consensus 142 ~~q~-~~~~~~~~ 153 (434)
T 2db3_A 142 AIQI-FNEARKFA 153 (434)
T ss_dssp HHHH-HHHHHHHT
T ss_pred HHHH-HHHHHHHH
T ss_conf 9988-87665542
No 24
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, structural genomics, PSI-2; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.79 E-value=0.00011 Score=46.79 Aligned_cols=144 Identities=15% Similarity=0.060 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHH
Q ss_conf 89999999999987405655542101246502576597899999999999808996699980858999999999999999
Q gi|254781215|r 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWL 132 (511)
Q Consensus 53 ~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~~Q~~~ilw~Ei~k~~ 132 (511)
.=|+++++++-++. -+.|.++=|+|||.++...++-++......+++++.|+....+++
T Consensus 10 ~~Q~~~~~al~~~~------------iv~~~G~AGTGKT~la~~~al~~l~~~~~~kiii~rp~v~~~~~~--------- 68 (208)
T 3b85_A 10 LGQKHYVDAIDTNT------------IVFGLGPAGSGKTYLAMAKAVQALQSKQVSRIILTRPAVEAGEKL--------- 68 (208)
T ss_dssp HHHHHHHHHHHHCS------------EEEEECCTTSSTTHHHHHHHHHHHHTTSCSEEEEEECSCCTTCCC---------
T ss_pred HHHHHHHHHHCCCC------------EEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCH---------
T ss_conf 88999999863598------------189987999739999999999985226614578720650255211---------
Q ss_pred HHCHHCCCCCCCCCCCCCCCCC------CCC-CCCCCCCCCCEEEEEECCCCCCCCCHHHHCCCCCCEEEEECCHHCCCH
Q ss_conf 8550001344432222223334------443-211123578616985303575561002120267614999711102997
Q gi|254781215|r 133 SLLPNKHWFEMQSLSLHPAPWY------SDV-LHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPD 205 (511)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~------~~~-~~~~~~~~~~~~~~~~~~~s~~~~ea~~G~h~~~~~lvI~DEAsgI~d 205 (511)
..+|. -......++..+.. ... ....+.. .+..... ..+-++|-.-+ ..++|+|||..+..
T Consensus 69 GfLpG---~~~eK~~p~~~~~~d~l~~~~~~~~~~~l~~-~~~i~~~-------~l~~iRGrt~~-n~~vIvDEaQN~t~ 136 (208)
T 3b85_A 69 GFLPG---TLNEKIDPYLRPLHDALRDMVEPEVIPKLME-AGIVEVA-------PLAYMRGRTLN-DAFVILDEAQNTTP 136 (208)
T ss_dssp CSSCC---------CTTTHHHHHHHTTTSCTTHHHHHHH-TTSEEEE-------EGGGGTTCCBC-SEEEEECSGGGCCH
T ss_pred HHCCC---CHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH-CCEEEEE-------EHHHCCCCCHH-CCEEEECHHHCCCH
T ss_conf 11147---6789999999999988887307889998763-5838996-------41320697720-06777315646999
Q ss_pred HHHHHHHHHHCCCCCCEEEEEECCCCC
Q ss_conf 889888888507998138998238998
Q gi|254781215|r 206 VINLGILGFLTERNANRFWIMTSNPRR 232 (511)
Q Consensus 206 ~i~e~i~~~Lt~~g~~~~~i~~~nP~~ 232 (511)
.-... .||.-|...+++.+|.|.-
T Consensus 137 ~~~~~---ilTRig~~sKli~~GD~~Q 160 (208)
T 3b85_A 137 AQMKM---FLTRLGFGSKMVVTGDITQ 160 (208)
T ss_dssp HHHHH---HHTTBCTTCEEEEEEC---
T ss_pred HHHHH---HHHHCCCCCEEEEECCHHH
T ss_conf 99999---9987178856999278776
No 25
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=97.78 E-value=0.00022 Score=44.87 Aligned_cols=75 Identities=21% Similarity=0.234 Sum_probs=50.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHH
Q ss_conf 55784589999999999987405655542101246502576597899999999999808996699980858999999999
Q gi|254781215|r 47 GFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWA 126 (511)
Q Consensus 47 ~~~~P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~~Q~~~ilw~ 126 (511)
+|..|.++|++++.++-.... .+.|.++.|.|||.+...-++-.+....+.++++..|+..-+... -.
T Consensus 25 g~~~~t~~Q~~ai~~~l~g~~-----------~vlv~apTGsGKT~~~~lp~l~~~~~~~~~~~li~~p~~~l~~q~-~~ 92 (367)
T 1hv8_A 25 GFEKPTDIQMKVIPLFLNDEY-----------NIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQV-AD 92 (367)
T ss_dssp TCCSCCHHHHHHHHHHHHTCS-----------EEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHHHHHHH-HH
T ss_pred CCCCCCHHHHHHHHHHHCCCC-----------CEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHHHHH-HH
T ss_conf 999999999999999975999-----------999988999769999999999986542896699995106766777-88
Q ss_pred HHHHHHH
Q ss_conf 9999998
Q gi|254781215|r 127 EVSKWLS 133 (511)
Q Consensus 127 Ei~k~~~ 133 (511)
.+.++..
T Consensus 93 ~~~~~~~ 99 (367)
T 1hv8_A 93 EIESLKG 99 (367)
T ss_dssp HHHHHHC
T ss_pred HHHHHHC
T ss_conf 9998731
No 26
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphoprotein, RNA-binding, ATP-binding; 3.50A {Homo sapiens}
Probab=97.72 E-value=0.00018 Score=45.41 Aligned_cols=75 Identities=19% Similarity=0.097 Sum_probs=51.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHH-CCCCEEEEEECCHHHHHHHH
Q ss_conf 55578458999999999998740565554210124650257659789999999999980-89966999808589999999
Q gi|254781215|r 46 EGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMST-RPGISVICLANSETQLKTTL 124 (511)
Q Consensus 46 ~~~~~P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~-~p~~kv~vtApt~~Q~~~il 124 (511)
-+|..|.++|++++..+-. +. .+-|.|+.|+|||.....-++-.+.. ..+.++++.+||...+.++
T Consensus 58 ~g~~~pt~iQ~~ai~~il~----g~--------dvlv~apTGsGKTla~~lpil~~~~~~~~~~~~lil~Pt~~L~~Q~- 124 (414)
T 3eiq_A 58 YGFEKPSAIQQRAILPCIK----GY--------DVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQI- 124 (414)
T ss_dssp TTCCSCCHHHHHHHHHHHT----TC--------CEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHH-
T ss_pred CCCCCCCHHHHHHHHHHHC----CC--------CEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHH-
T ss_conf 7999999999999999986----99--------8999899997488999999999765336787499995849999999-
Q ss_pred HHHHHHHHH
Q ss_conf 999999998
Q gi|254781215|r 125 WAEVSKWLS 133 (511)
Q Consensus 125 w~Ei~k~~~ 133 (511)
..++.++..
T Consensus 125 ~~~~~~~~~ 133 (414)
T 3eiq_A 125 QKVVMALGD 133 (414)
T ss_dssp HHHHHHHGG
T ss_pred HHHHHHHHC
T ss_conf 999986303
No 27
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, helicase, hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A*
Probab=97.69 E-value=0.00037 Score=43.44 Aligned_cols=78 Identities=17% Similarity=0.075 Sum_probs=54.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHH-----CCCCEEEEEECCHHHHH
Q ss_conf 5578458999999999998740565554210124650257659789999999999980-----89966999808589999
Q gi|254781215|r 47 GFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMST-----RPGISVICLANSETQLK 121 (511)
Q Consensus 47 ~~~~P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~-----~p~~kv~vtApt~~Q~~ 121 (511)
+|..|.+-|++++..+-. +.+ .-+.|.|..|+|||.....-++-.++. ..+.++++++||...+.
T Consensus 91 gf~~~t~iQ~~ai~~il~----g~~------~dvlv~ApTGSGKTlay~lP~l~~l~~~~~~~~~~~~~lil~PtreLa~ 160 (563)
T 3i5x_A 91 EFPGLTPVQQKTIKPILS----SED------HDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLAL 160 (563)
T ss_dssp CCSSCCHHHHHHHHHHHS----SSS------EEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHH
T ss_pred CCCCCCHHHHHHHHHHHC----CCC------CCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCHHHHHH
T ss_conf 999999999999999976----999------9889988998509999999999999844435678848999815599999
Q ss_pred HHHHHHHHHHHHHC
Q ss_conf 99999999999855
Q gi|254781215|r 122 TTLWAEVSKWLSLL 135 (511)
Q Consensus 122 ~ilw~Ei~k~~~~~ 135 (511)
++ ..++.++....
T Consensus 161 Qi-~~~~~~~~~~~ 173 (563)
T 3i5x_A 161 QI-EAEVKKIHDMN 173 (563)
T ss_dssp HH-HHHHHHHHHHC
T ss_pred HH-HHHHHHHHHHC
T ss_conf 99-99999998632
No 28
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=97.65 E-value=0.00026 Score=44.40 Aligned_cols=66 Identities=20% Similarity=0.231 Sum_probs=49.8
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHH
Q ss_conf 45899999999999874056555421012465025765978999999999998089966999808589999999999999
Q gi|254781215|r 51 PRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSK 130 (511)
Q Consensus 51 P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~~Q~~~ilw~Ei~k 130 (511)
+|++|.+++..|.+...++. .+.+-++-|+|||...-..++- .+.+|+++.+|..|...+ ..|+++
T Consensus 8 ~R~~Q~~~~~~i~~al~~~~--------~~~ieApTGtGKTla~L~~a~~-----~~~kvii~t~T~~l~~Q~-~~e~~~ 73 (540)
T 2vl7_A 8 LRQWQAEKLGEAINALKHGK--------TLLLNAKPGLGKTVFVEVLGMQ-----LKKKVLIFTRTHSQLDSI-YKNAKL 73 (540)
T ss_dssp -CCHHHHHHHHHHHHHHTTC--------EEEEECCTTSCHHHHHHHHHHH-----HTCEEEEEESCHHHHHHH-HHHHGG
T ss_pred CCHHHHHHHHHHHHHHHCCC--------CEEEECCCCHHHHHHHHHHHHH-----HCCCEEEECCCHHHHHHH-HHHHHC
T ss_conf 58899999999999994699--------0999928816899999999999-----799199996989999999-997156
No 29
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=97.65 E-value=0.00021 Score=44.96 Aligned_cols=70 Identities=16% Similarity=0.163 Sum_probs=48.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHH
Q ss_conf 55784589999999999987405655542101246502576597899999999999808996699980858999999999
Q gi|254781215|r 47 GFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWA 126 (511)
Q Consensus 47 ~~~~P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~~Q~~~ilw~ 126 (511)
+|..|.+-|++++.++-.+ + .+.|.++.|.|||.+...-++ ..+.++++..||...+... ..
T Consensus 13 g~~~~~p~Q~~ai~~~l~g----~--------dviv~apTGsGKT~~~~lp~l-----~~~~~~lilvP~~~L~~q~-~~ 74 (337)
T 2z0m_A 13 GFKNFTEVQSKTIPLMLQG----K--------NVVVRAKTGSGKTAAYAIPIL-----ELGMKSLVVTPTRELTRQV-AS 74 (337)
T ss_dssp TCCSCCHHHHHHHHHHHTT----C--------CEEEECCTTSSHHHHHHHHHH-----HHTCCEEEECSSHHHHHHH-HH
T ss_pred CCCCCCHHHHHHHHHHHCC----C--------CEEEECCCCCHHHHHHHHHHH-----HHCCCEEEEECCHHHHHHH-HH
T ss_conf 9999999999999999849----9--------899989999569999999999-----8589889994678998888-88
Q ss_pred HHHHHHHH
Q ss_conf 99999985
Q gi|254781215|r 127 EVSKWLSL 134 (511)
Q Consensus 127 Ei~k~~~~ 134 (511)
++..+...
T Consensus 75 ~~~~~~~~ 82 (337)
T 2z0m_A 75 HIRDIGRY 82 (337)
T ss_dssp HHHHHTTT
T ss_pred HHHHHCCC
T ss_conf 77541034
No 30
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A
Probab=97.56 E-value=0.00024 Score=44.62 Aligned_cols=72 Identities=15% Similarity=0.094 Sum_probs=52.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCC----CCEEEEEECCHHHHHH
Q ss_conf 557845899999999999874056555421012465025765978999999999998089----9669998085899999
Q gi|254781215|r 47 GFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRP----GISVICLANSETQLKT 122 (511)
Q Consensus 47 ~~~~P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p----~~kv~vtApt~~Q~~~ 122 (511)
+|..|-+.|++++..+-.. + -+.+.|..|+|||.....-++-.+.... +.++++.+||..-+..
T Consensus 20 g~~~pt~iQ~~aip~il~g------~------dvi~~a~TGsGKTlay~lp~l~~~~~~~~~~~~~~alil~PtreLa~q 87 (207)
T 2gxq_A 20 GLTTPTPIQAAALPLALEG------K------DLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQ 87 (207)
T ss_dssp TCCSCCHHHHHHHHHHHTT------C------CEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHCC------C------CEEEECCCCCCCCCEEECCHHHHHCCCCCCCCCCEEEEEECCHHHHHH
T ss_conf 9999999999999999779------9------889988899997434305077653011003689879999798999999
Q ss_pred HHHHHHHHH
Q ss_conf 999999999
Q gi|254781215|r 123 TLWAEVSKW 131 (511)
Q Consensus 123 ilw~Ei~k~ 131 (511)
+ ..++.+.
T Consensus 88 i-~~~~~~l 95 (207)
T 2gxq_A 88 V-ASELTAV 95 (207)
T ss_dssp H-HHHHHHH
T ss_pred H-HHHHHHH
T ss_conf 9-9988876
No 31
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=97.53 E-value=0.00054 Score=42.42 Aligned_cols=167 Identities=15% Similarity=0.146 Sum_probs=81.7
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHH-CCCCEEEEEECCHHHHHHHHH-HHH
Q ss_conf 458999999999998740565554210124650257659789999999999980-899669998085899999999-999
Q gi|254781215|r 51 PRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMST-RPGISVICLANSETQLKTTLW-AEV 128 (511)
Q Consensus 51 P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~-~p~~kv~vtApt~~Q~~~ilw-~Ei 128 (511)
-+++|.+.++-+.....++. .+.++-.-|.|||..+..++.+.+.. +....++|++|..-- . - | .|+
T Consensus 237 Lr~yQ~~gvnwl~~~~~~~~--------~~ILADemGLGKTiqai~~i~~l~~~~~~~~p~LIV~P~sll-~-q-W~~E~ 305 (800)
T 3mwy_W 237 LRDFQLTGINWMAFLWSKGD--------NGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVPLSTM-P-A-WLDTF 305 (800)
T ss_dssp CCTHHHHHHHHHHHHHTTTC--------CEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECCTTTH-H-H-HHHHH
T ss_pred CCHHHHHHHHHHHHHHHCCC--------CEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCHHHH-H-H-HHHHH
T ss_conf 86999999999999985589--------869985698995899999999999965889977998675775-8-9-99999
Q ss_pred HHHHHHCHHCCCC-CCCCCCC-CCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHCCCCCCEEEEECCHHCCCH-
Q ss_conf 9999855000134-4432222-223334443211123578616985303575561002120267614999711102997-
Q gi|254781215|r 129 SKWLSLLPNKHWF-EMQSLSL-HPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPD- 205 (511)
Q Consensus 129 ~k~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ea~~G~h~~~~~lvI~DEAsgI~d- 205 (511)
.+|...+...-.. ....+.. ....+.............-...++....-....+.+. ...-.++|+|||+.+.+
T Consensus 306 ~k~~p~l~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~VlIttye~l~~d~~~l~---~~~w~~vIvDEaH~lkN~ 382 (800)
T 3mwy_W 306 EKWAPDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAELG---SIKWQFMAVDEAHRLKNA 382 (800)
T ss_dssp HHHSTTCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHHHH---TSEEEEEEETTGGGGCCS
T ss_pred HHHCCCCEEEEEECCHHHHHHHHHHHHCCCHHHHCCCCCCCCEEEECHHHHHHHHHHHH---CCCCCEEECCCCEECCCH
T ss_conf 98689971899958778889999877403513310134578989975999998799983---277665720556045680
Q ss_pred --HHHHHHHHHHCCCCCCEEEEEECCCCCCCC
Q ss_conf --889888888507998138998238998765
Q gi|254781215|r 206 --VINLGILGFLTERNANRFWIMTSNPRRLSG 235 (511)
Q Consensus 206 --~i~e~i~~~Lt~~g~~~~~i~~~nP~~~~g 235 (511)
..+.++.. -.+..+++++|+|..+..
T Consensus 383 ~s~~~~~~~~----l~~~~rllLTGTP~qn~~ 410 (800)
T 3mwy_W 383 ESSLYESLNS----FKVANRMLITGTPLQNNI 410 (800)
T ss_dssp SSHHHHHHTT----SEEEEEEEECSCCCSSCS
T ss_pred HHHHHHHHHH----CCCCCEEEECCCCCCCCH
T ss_conf 2388899986----053624664266676871
No 32
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=97.52 E-value=0.0011 Score=40.43 Aligned_cols=89 Identities=16% Similarity=0.093 Sum_probs=64.8
Q ss_pred HHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHC--------
Q ss_conf 642145577756555784589999999999987405655542101246502576597899999999999808--------
Q gi|254781215|r 34 HFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTR-------- 105 (511)
Q Consensus 34 ~~~~w~~~~~~~~~~~~P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~-------- 105 (511)
..-++-.++-.=.+|..|-+-|++.+-.+-.. + -+.+.|..|+|||.....-++..++..
T Consensus 29 ~l~~~ll~~L~~~g~~~pt~IQ~~aip~il~g------~------dvi~~A~TGsGKTlayllP~l~~i~~~~~~~~~~~ 96 (253)
T 1wrb_A 29 KLDPTIRNNILLASYQRPTPIQKNAIPAILEH------R------DIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYS 96 (253)
T ss_dssp SCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTT------C------CEEEECCTTSSHHHHHHHHHHHHHHTTCC------
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCC------C------CEEEECCCCCCCEEEEHHHHHHHHHHCCCCCCCCC
T ss_conf 98999999999879999999999999999779------9------88998259999731661799999873121123456
Q ss_pred --CCCEEEEEECCHHHHHHHHHHHHHHHHHHC
Q ss_conf --996699980858999999999999999855
Q gi|254781215|r 106 --PGISVICLANSETQLKTTLWAEVSKWLSLL 135 (511)
Q Consensus 106 --p~~kv~vtApt~~Q~~~ilw~Ei~k~~~~~ 135 (511)
.+.++++.+||...+..+ ..++.......
T Consensus 97 ~~~~~~alIl~PTreL~~qv-~~~~~~~~~~~ 127 (253)
T 1wrb_A 97 KTAYPKCLILAPTRELAIQI-LSESQKFSLNT 127 (253)
T ss_dssp CCBCCSEEEECSSHHHHHHH-HHHHHHHHTTS
T ss_pred CCCCCEEEEECCCHHHHHHH-HHHHHHHCCCC
T ss_conf 67884799975777775302-45544212578
No 33
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=97.50 E-value=0.00035 Score=43.63 Aligned_cols=73 Identities=16% Similarity=0.109 Sum_probs=48.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHH-HCCCCEEEEEECCHHHHHHHHH
Q ss_conf 557845899999999999874056555421012465025765978999999999998-0899669998085899999999
Q gi|254781215|r 47 GFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMS-TRPGISVICLANSETQLKTTLW 125 (511)
Q Consensus 47 ~~~~P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~-~~p~~kv~vtApt~~Q~~~ilw 125 (511)
+|..|.++|++++..+-.. + .+.|.+..|.|||......++..+. .....++++++||...+.++ .
T Consensus 56 g~~~pt~iQ~~ai~~~l~g------~------dvlv~apTGsGKTl~f~lp~l~~~~~~~~~~~~lil~Pt~~l~~q~-~ 122 (410)
T 2j0s_A 56 GFEKPSAIQQRAIKQIIKG------R------DVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQI-Q 122 (410)
T ss_dssp TCCSCCHHHHHHHHHHHTT------C------CEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHH-H
T ss_pred CCCCCCHHHHHHHHHHHCC------C------CEEEECCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHH-H
T ss_conf 9999899999999999869------9------9899899983689999999998313566786289993839999999-9
Q ss_pred HHHHHHH
Q ss_conf 9999999
Q gi|254781215|r 126 AEVSKWL 132 (511)
Q Consensus 126 ~Ei~k~~ 132 (511)
..+.++.
T Consensus 123 ~~~~~~~ 129 (410)
T 2j0s_A 123 KGLLALG 129 (410)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
T ss_conf 9999863
No 34
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=97.48 E-value=0.00093 Score=40.92 Aligned_cols=74 Identities=18% Similarity=0.191 Sum_probs=54.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHH-CCCCEEEEEECCHHHHHHHH
Q ss_conf 55578458999999999998740565554210124650257659789999999999980-89966999808589999999
Q gi|254781215|r 46 EGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMST-RPGISVICLANSETQLKTTL 124 (511)
Q Consensus 46 ~~~~~P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~-~p~~kv~vtApt~~Q~~~il 124 (511)
.+|..|-+.|++++..+-. +. -+.+.|+.|+|||.....-++..+.. ....++++.+|+..-+..+
T Consensus 42 ~g~~~pt~iQ~~aip~il~----g~--------dvli~a~TGsGKTlay~lp~l~~~~~~~~~~~~lil~p~~~l~~q~- 108 (230)
T 2oxc_A 42 AGFERPSPVQLKAIPLGRC----GL--------DLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQI- 108 (230)
T ss_dssp TTCCSCCHHHHHHHHHHHT----TC--------CEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHH-
T ss_pred CCCCCCCHHHHHHHHHHHC----CC--------CEEEEECCCCCCCEEEECCCHHHHHCCCCCCEEEECCCCHHHHHHH-
T ss_conf 7999999999999999857----99--------8999927987642023043023320035776234407999999988-
Q ss_pred HHHHHHHH
Q ss_conf 99999999
Q gi|254781215|r 125 WAEVSKWL 132 (511)
Q Consensus 125 w~Ei~k~~ 132 (511)
..++.+..
T Consensus 109 ~~~~~~l~ 116 (230)
T 2oxc_A 109 HSVITAIG 116 (230)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
T ss_conf 89988776
No 35
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic transport, mRNA export, protein interaction; HET: ADP; 2.51A {Homo sapiens}
Probab=97.47 E-value=0.0027 Score=37.98 Aligned_cols=67 Identities=18% Similarity=0.182 Sum_probs=45.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHH-CCCCEEEEEECCHHHHHHH
Q ss_conf 5578458999999999998740565554210124650257659789999999999980-8996699980858999999
Q gi|254781215|r 47 GFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMST-RPGISVICLANSETQLKTT 123 (511)
Q Consensus 47 ~~~~P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~-~p~~kv~vtApt~~Q~~~i 123 (511)
+|..|-+-|++++-.+- .+.++ -+.|.|..|+|||.....-++..+.. ..+.++++++||..-+..+
T Consensus 111 g~~~pt~iQ~~aIp~il----~~~g~------dviv~a~TGSGKTlaf~lpi~~~~~~~~~~~~alil~PtreLa~qi 178 (300)
T 3fmo_B 111 GFNRPSKIQENALPLML----AEPPQ------NLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQT 178 (300)
T ss_dssp TCCSCCHHHHHHHHHHT----SSSCC------CEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHH----HCCCC------EEEEECCCCCCHHHHHHCCHHHCCCCCCCCCEEEEEECCHHHHHHH
T ss_conf 99999999999999998----36897------2999868998278886220121234346786399993989999999
No 36
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=97.47 E-value=0.00088 Score=41.06 Aligned_cols=73 Identities=16% Similarity=0.048 Sum_probs=54.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHC-----CCCEEEEEECCHHHHH
Q ss_conf 55784589999999999987405655542101246502576597899999999999808-----9966999808589999
Q gi|254781215|r 47 GFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTR-----PGISVICLANSETQLK 121 (511)
Q Consensus 47 ~~~~P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~-----p~~kv~vtApt~~Q~~ 121 (511)
+|+.|.+-|++++..+-... -+-+.|..|+|||.....-++..+.-. .+.++++.+||...+.
T Consensus 44 g~~~pt~iQ~~aip~il~g~------------dvl~~a~TGSGKTlayllp~l~~i~~~~~~~~~~~~~lil~pt~~la~ 111 (236)
T 2pl3_A 44 QYRLVTEIQKQTIGLALQGK------------DVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAY 111 (236)
T ss_dssp TCCBCCHHHHHHHHHHHTTC------------CEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHH
T ss_pred CCCCCCHHHHHHHHHHHCCC------------CEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHH
T ss_conf 99999999999999997799------------889980699970288867998754420033456846999758899997
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999999
Q gi|254781215|r 122 TTLWAEVSKWL 132 (511)
Q Consensus 122 ~ilw~Ei~k~~ 132 (511)
.+ +....+..
T Consensus 112 q~-~~~~~~l~ 121 (236)
T 2pl3_A 112 QT-FEVLRKVG 121 (236)
T ss_dssp HH-HHHHHHHT
T ss_pred HH-HHHHHHHH
T ss_conf 45-57766530
No 37
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination/DNA binding complex; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=97.47 E-value=0.0044 Score=36.69 Aligned_cols=168 Identities=20% Similarity=0.156 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCC-----CCEEEEEECCHHHHHHHHH-
Q ss_conf 5899999999999874056555421012465025765978999999999998089-----9669998085899999999-
Q gi|254781215|r 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRP-----GISVICLANSETQLKTTLW- 125 (511)
Q Consensus 52 ~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p-----~~kv~vtApt~~Q~~~ilw- 125 (511)
++.|++.++-+.+....... . ....+.++=-=|.|||..+..++...+...+ ..+++|++|+. +..- |
T Consensus 57 ~phQ~~gv~~l~~~~~~~~~-~--~~~G~iLADemGLGKTlqaia~i~~l~~~~~~~~~~~~~~LIV~P~s--l~~q-W~ 130 (644)
T 1z3i_X 57 RPHQREGVKFLWDCVTGRRI-E--NSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPSS--LVRN-WY 130 (644)
T ss_dssp CHHHHHHHHHHHHHHTTSSS-T--TCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECHH--HHHH-HH
T ss_pred HHHHHHHHHHHHHHHHHHCC-C--CCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECHH--HHHH-HH
T ss_conf 39999999999985650033-5--88877986389817979999999999985753268788089997889--9999-99
Q ss_pred HHHHHHHHHCHHCCCCCCCCC-C--CCCCCCCCCCCCCCCCCCCCEEEEEE-CCCCCCCCCHHHHCCCCCCEEEEECCHH
Q ss_conf 999999985500013444322-2--22233344432111235786169853-0357556100212026761499971110
Q gi|254781215|r 126 AEVSKWLSLLPNKHWFEMQSL-S--LHPAPWYSDVLHCSLGIDSKHYSTMC-RTYSEERPDTFVGHHNTYGMAIINDEAS 201 (511)
Q Consensus 126 ~Ei~k~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~ea~~G~h~~~~~lvI~DEAs 201 (511)
.|+.+|.......-....... . .....+.... .........+.. ...+. ..+. ++.....++|+|||+
T Consensus 131 ~E~~k~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~----~~~~~~~v~i~sy~~~~~-~~~~---l~~~~~~~vI~DEaH 202 (644)
T 1z3i_X 131 NEVGKWLGGRVQPVAIDGGSKDEIDSKLVNFISQQ----GMRIPTPILIISYETFRL-HAEV---LHKGKVGLVICDEGH 202 (644)
T ss_dssp HHHHHHHGGGCCEEEECSSCHHHHHHHHHHHHCCC----SSCCSCCEEEEEHHHHHH-HTTT---TTTSCCCEEEETTGG
T ss_pred HHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHC----CCCCCCCEEEECHHHHHH-HHHH---HHCCCCCEEEEECCC
T ss_conf 99999738761599984896888999999877642----766676589975999997-8999---853898879941201
Q ss_pred CCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCC
Q ss_conf 299788988888850799813899823899876
Q gi|254781215|r 202 GTPDVINLGILGFLTERNANRFWIMTSNPRRLS 234 (511)
Q Consensus 202 gI~d~i~e~i~~~Lt~~g~~~~~i~~~nP~~~~ 234 (511)
.+...--.......+- ..+..|+++|+|..+.
T Consensus 203 ~~kn~~s~~~~~~~~~-~~~~~~lltgTP~~n~ 234 (644)
T 1z3i_X 203 RLKNSDNQTYLALNSM-NAQRRVLISGTPIQND 234 (644)
T ss_dssp GCCTTCHHHHHHHHHH-CCSEEEEECSSCSGGG
T ss_pred CCCCCCCHHHHHHHHC-CCHHHHHHCCCCCCCC
T ss_conf 0344021999998741-3025433306611288
No 38
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomics consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=97.41 E-value=0.001 Score=40.69 Aligned_cols=71 Identities=21% Similarity=0.200 Sum_probs=51.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHH-------CCCCEEEEEECCHHH
Q ss_conf 5578458999999999998740565554210124650257659789999999999980-------899669998085899
Q gi|254781215|r 47 GFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMST-------RPGISVICLANSETQ 119 (511)
Q Consensus 47 ~~~~P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~-------~p~~kv~vtApt~~Q 119 (511)
+|..|-+-|++.+..+-.. . -+.|.|..|+|||.....-++..+.. ..+.++++.+||..-
T Consensus 39 g~~~pt~iQ~~aip~il~g----~--------dviv~a~TGsGKTlay~lp~l~~~~~~~~~~~~~~~~~alil~PtreL 106 (228)
T 3iuy_A 39 GILKPTPIQSQAWPIILQG----I--------DLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTREL 106 (228)
T ss_dssp TCCSCCHHHHHHHHHHHTT----C--------CEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHH
T ss_pred CCCCCCHHHHHHHHHHHCC----C--------CEEEECCCCCCCCCHHHHHHHHHHHHCCCCHHCCCCCEEEEECCCHHH
T ss_conf 9999999999999999679----9--------889987899986366553289987620000001578549998285889
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999999
Q gi|254781215|r 120 LKTTLWAEVSK 130 (511)
Q Consensus 120 ~~~ilw~Ei~k 130 (511)
+..+. .++.+
T Consensus 107 a~qi~-~~~~~ 116 (228)
T 3iuy_A 107 ALHVE-AECSK 116 (228)
T ss_dssp HHHHH-HHHHH
T ss_pred HHHHH-HHHHH
T ss_conf 99999-99998
No 39
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, plasmid, helicase, hydrolase, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2w74_B*
Probab=97.33 E-value=0.0031 Score=37.65 Aligned_cols=169 Identities=12% Similarity=-0.030 Sum_probs=79.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCC--CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHH
Q ss_conf 57845899999999999874056555--4210124650257659789999999999980899669998085899999999
Q gi|254781215|r 48 FSAPRSWQLEFMEVVDAHCLNSVNNP--NPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLW 125 (511)
Q Consensus 48 ~~~P~~WQ~e~l~~i~~~~~~~~~~~--~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~~Q~~~ilw 125 (511)
..-||.+|.++.+.+.++..+..... ...-.+-.|--..|+|||..+.+++-..+-.....+|+++++...=... +.
T Consensus 269 ~~~~R~~Q~~Av~~i~~~v~~~~~~~~~~~~~~~Gli~haTGSGKTlT~~~~a~~l~~~~~~~~VLflvDR~~L~~Q-~~ 347 (1038)
T 2w00_A 269 LLVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTSFKAARLATELDFIDKVFFVVDRKDLDYQ-TM 347 (1038)
T ss_dssp EEECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHHHHHHHHHTTCTTCCEEEEEECGGGCCHH-HH
T ss_pred EEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHH-HH
T ss_conf 59724030999999999998520021003578726999778982369999999999828778847999671889999-99
Q ss_pred HHHHHHHHHCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCC-CCHHHHCCCCCCEEEEECCHHCCC
Q ss_conf 9999999855000134443222222333444321112357861698530357556-100212026761499971110299
Q gi|254781215|r 126 AEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEER-PDTFVGHHNTYGMAIINDEASGTP 204 (511)
Q Consensus 126 ~Ei~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~ea~~G~h~~~~~lvI~DEAsgI~ 204 (511)
.+..+ ..+.. .........+ ............+.+........ .....-.. ....++|+|||+-..
T Consensus 348 ~~f~~---~~~~~--~~~~~~~~~l-------~~~~~~~~~~ii~ttiqk~~~~~~~~~~~~~~-~~~~~iIvDEaHRs~ 414 (1038)
T 2w00_A 348 KEYQR---FSPDS--VNGSENTAGL-------KRNLDKDDNKIIVTTIQKLNNLMKAESDLPVY-NQQVVFIFDECHRSQ 414 (1038)
T ss_dssp HHHHT---TSTTC--SSSSCCCHHH-------HHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGG-GSCEEEEEESCCTTH
T ss_pred HHHHH---HCCCC--CEECCCHHHH-------HHHHHCCCCCCEEEEEEEECCHHHHHHHCCCC-CCCEEEEEECCCCCC
T ss_conf 99997---45765--3103426767-------76542035552477788741122221000144-653089995677534
Q ss_pred H-HHHHHHHHHHCCCCCCEEEEEECCCCCC
Q ss_conf 7-8898888885079981389982389987
Q gi|254781215|r 205 D-VINLGILGFLTERNANRFWIMTSNPRRL 233 (511)
Q Consensus 205 d-~i~e~i~~~Lt~~g~~~~~i~~~nP~~~ 233 (511)
- .....+...+. ....+-.+++|...
T Consensus 415 ~~~~~~~~~~~~~---~a~~~g~T~TP~~~ 441 (1038)
T 2w00_A 415 FGEAQKNLKKKFK---RYYQFGFTGTPIFP 441 (1038)
T ss_dssp HHHHHHHHHHHCS---SEEEEEEESSCCCS
T ss_pred CCCHHHHHHHHHH---HHHHHCCCCCCCCC
T ss_conf 2411577776535---65542013544200
No 40
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=97.31 E-value=0.0011 Score=40.35 Aligned_cols=68 Identities=21% Similarity=0.262 Sum_probs=48.3
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH
Q ss_conf 84589999999999987405655542101246502576597899999999999808996699980858999999999999
Q gi|254781215|r 50 APRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVS 129 (511)
Q Consensus 50 ~P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~~Q~~~ilw~Ei~ 129 (511)
-||+.|++++..|++...+++ .+.+-||-|+|||.. .|+.- +. .+.+|++..+|..|...+ ..|+.
T Consensus 3 ~~R~~Q~~~~~~i~~~l~~~~--------~~~iEApTGtGKTla--yL~~a--l~-~~~~vii~T~T~~lq~Q~-~~el~ 68 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNF--------LVALNAPTGSGKTLF--SLLVS--LE-VKPKVLFVVRTHNEFYPI-YRDLT 68 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTC--------EEEEECCTTSSHHHH--HHHHH--HH-HCSEEEEEESSGGGHHHH-HHHHT
T ss_pred CCCHHHHHHHHHHHHHHHCCC--------EEEEECCCHHHHHHH--HHHHH--HH-HCCCEEEECCCHHHHHHH-HHHHH
T ss_conf 748899999999999994599--------399987983799999--99999--99-799799998879999999-99999
Q ss_pred HH
Q ss_conf 99
Q gi|254781215|r 130 KW 131 (511)
Q Consensus 130 k~ 131 (511)
+.
T Consensus 69 ~l 70 (551)
T 3crv_A 69 KI 70 (551)
T ss_dssp TC
T ss_pred HH
T ss_conf 99
No 41
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=97.29 E-value=0.0014 Score=39.76 Aligned_cols=74 Identities=18% Similarity=0.159 Sum_probs=54.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCC-----CCEEEEEECCHHHHH
Q ss_conf 557845899999999999874056555421012465025765978999999999998089-----966999808589999
Q gi|254781215|r 47 GFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRP-----GISVICLANSETQLK 121 (511)
Q Consensus 47 ~~~~P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p-----~~kv~vtApt~~Q~~ 121 (511)
+|..|.+-|++++..+-.. + -+.|.|..|+|||.....-++-.+.... ...+++.+||...+.
T Consensus 73 Gf~~ptpiQ~~aIp~il~g------~------dviv~A~TGSGKTlay~lpil~~~~~~~~~~~~~~~~li~~pt~el~~ 140 (262)
T 3ly5_A 73 GFTNMTEIQHKSIRPLLEG------R------DLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAM 140 (262)
T ss_dssp TCCBCCHHHHHHHHHHHHT------C------CCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHH
T ss_pred CCCCCCHHHHHHHHHHHCC------C------CEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHH
T ss_conf 9999999999999999869------9------966788999981799999999877651245656846999563577667
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999998
Q gi|254781215|r 122 TTLWAEVSKWLS 133 (511)
Q Consensus 122 ~ilw~Ei~k~~~ 133 (511)
.+ +..+.+...
T Consensus 141 q~-~~~~~~l~~ 151 (262)
T 3ly5_A 141 QT-FGVLKELMT 151 (262)
T ss_dssp HH-HHHHHHHTT
T ss_pred HH-HHHHHHHHH
T ss_conf 78-999999743
No 42
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=97.20 E-value=0.0015 Score=39.66 Aligned_cols=75 Identities=19% Similarity=0.193 Sum_probs=54.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHH
Q ss_conf 557845899999999999874056555421012465025765978999999999998089-9669998085899999999
Q gi|254781215|r 47 GFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRP-GISVICLANSETQLKTTLW 125 (511)
Q Consensus 47 ~~~~P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p-~~kv~vtApt~~Q~~~ilw 125 (511)
+|.-|-+-|++.+..+-.. + -+.+.|..|+|||.....-++..+.... ..++++.+||..-+.++ .
T Consensus 33 g~~~pt~iQ~~aip~il~g------~------dvii~a~TGSGKTlay~lp~~~~~~~~~~~~~~lil~PtreLa~qi-~ 99 (220)
T 1t6n_A 33 GFEHPSEVQHECIPQAILG------M------DVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQI-S 99 (220)
T ss_dssp TCCCCCHHHHHHHHHHHTT------C------CEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHH-H
T ss_pred CCCCCCHHHHHHHHHHHCC------C------CEEEECCCCCCCHHHHCCCHHHCCCCCCCCCEEEEECCCHHHHHHH-H
T ss_conf 9999999999999999779------9------8899777998720131141121135677883189937989999999-9
Q ss_pred HHHHHHHHH
Q ss_conf 999999985
Q gi|254781215|r 126 AEVSKWLSL 134 (511)
Q Consensus 126 ~Ei~k~~~~ 134 (511)
.++.+....
T Consensus 100 ~~~~~~~~~ 108 (220)
T 1t6n_A 100 KEYERFSKY 108 (220)
T ss_dssp HHHHHHTTT
T ss_pred HHHHHHHHH
T ss_conf 999999830
No 43
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=97.17 E-value=0.0028 Score=37.88 Aligned_cols=65 Identities=12% Similarity=0.055 Sum_probs=48.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHC-CCCEEEEEECCHHHHHHH
Q ss_conf 55784589999999999987405655542101246502576597899999999999808-996699980858999999
Q gi|254781215|r 47 GFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTR-PGISVICLANSETQLKTT 123 (511)
Q Consensus 47 ~~~~P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~-p~~kv~vtApt~~Q~~~i 123 (511)
+|..|.+-|+.++..|.... -+.|.|..|+|||.....-++..+... .+.+.++..|+...+...
T Consensus 23 g~~~pt~iQ~~aip~il~g~------------dvii~a~TGsGKTlayllp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (219)
T 1q0u_A 23 RFYKPTEIQERIIPGALRGE------------SMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQI 88 (219)
T ss_dssp TCCSCCHHHHHHHHHHHHTC------------CEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHCCC------------CEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCEECCHHHHHHHH
T ss_conf 99999999999999996799------------8899817999840577635554022345676530111205677777
No 44
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ ATPase, DNA polymerase; HET: ATG ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.17 E-value=0.0033 Score=37.45 Aligned_cols=138 Identities=18% Similarity=0.139 Sum_probs=75.0
Q ss_pred HHCCCCCC--CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 64214557--7756555784589999999999987405655542101246502576597899999999999808996699
Q gi|254781215|r 34 HFFPWGEK--GTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVI 111 (511)
Q Consensus 34 ~~~~w~~~--~~~~~~~~~P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~ 111 (511)
...||-++ +..+..+.| |.++.+.+.....++.. |. +...+..|+|||+++-.++-....-.....++
T Consensus 11 ~~~~w~ekyrP~~~~divg----~~~~~~~l~~~i~~~~~---~~---lLl~GppG~GKTtla~~la~~~~~~~~~~~~~ 80 (340)
T 1sxj_C 11 ENLPWVEKYRPETLDEVYG----QNEVITTVRKFVDEGKL---PH---LLFYGPPGTGKTSTIVALAREIYGKNYSNMVL 80 (340)
T ss_dssp -CCCHHHHTCCSSGGGCCS----CHHHHHHHHHHHHTTCC---CC---EEEECSSSSSHHHHHHHHHHHHHTTSHHHHEE
T ss_pred CCCCHHHHHCCCCHHHHCC----CHHHHHHHHHHHHCCCC---CE---EEEECCCCCCHHHHHHHHHHHHHCCCCCCCEE
T ss_conf 7886788848998999059----49999999999977999---86---98889599999999999999862466776346
Q ss_pred EEECCHHHHHHHHHHHHHHHHHHCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHCCCCC
Q ss_conf 98085899999999999999985500013444322222233344432111235786169853035755610021202676
Q gi|254781215|r 112 CLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTY 191 (511)
Q Consensus 112 vtApt~~Q~~~ilw~Ei~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ea~~G~h~~~ 191 (511)
..-++...-.+........... .. ....+.
T Consensus 81 ~~~~~~~~~i~~~~~~~~~~~~----------------------------------------------~~---~~~~~~- 110 (340)
T 1sxj_C 81 ELNASDDRGIDVVRNQIKDFAS----------------------------------------------TR---QIFSKG- 110 (340)
T ss_dssp EECTTSCCSHHHHHTHHHHHHH----------------------------------------------BC---CSSSCS-
T ss_pred EECCCCCCCHHHHHHHHHHHHH----------------------------------------------HH---HHCCCC-
T ss_conf 6234334772589888888777----------------------------------------------66---514577-
Q ss_pred CEEEEECCHHCCCHHHHHHHHHHHCCCCCCEEEEEECCCC
Q ss_conf 1499971110299788988888850799813899823899
Q gi|254781215|r 192 GMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPR 231 (511)
Q Consensus 192 ~~lvI~DEAsgI~d~i~e~i~~~Lt~~g~~~~~i~~~nP~ 231 (511)
.-++|+||+..+......++..+|.......+++++.|..
T Consensus 111 ~kviiiDe~d~l~~~~qn~Ll~~le~~~~~~~~il~~n~~ 150 (340)
T 1sxj_C 111 FKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYA 150 (340)
T ss_dssp CEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCG
T ss_pred EEEEEEECHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCH
T ss_conf 4899995532413777999999998557652664314706
No 45
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=97.14 E-value=0.0019 Score=38.98 Aligned_cols=70 Identities=14% Similarity=0.112 Sum_probs=51.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHH-CCCCEEEEEECCHHHHHHHHH
Q ss_conf 5578458999999999998740565554210124650257659789999999999980-899669998085899999999
Q gi|254781215|r 47 GFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMST-RPGISVICLANSETQLKTTLW 125 (511)
Q Consensus 47 ~~~~P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~-~p~~kv~vtApt~~Q~~~ilw 125 (511)
+|+-|-+.|++++..+-.. + -+.+.|..|+|||.....-++..+.. ..+..+++..|+..-+..+ .
T Consensus 22 g~~~pt~iQ~~aip~il~G------~------dvi~~a~tGsGKTlayllp~l~~~~~~~~~~~~~i~~~~~~l~~~~-~ 88 (206)
T 1vec_A 22 GWEKPSPIQEESIPIALSG------R------DILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQV-S 88 (206)
T ss_dssp TCCSCCHHHHHHHHHHHTT------C------CEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHH-H
T ss_pred CCCCCCHHHHHHHHHHHCC------C------CEEEEECCCCCCEEEEECCHHHHCCCCCCCCCEEEEECCHHHHHHH-H
T ss_conf 9999999999999999879------9------8899930799840156434243012345786237873328899999-9
Q ss_pred HHHH
Q ss_conf 9999
Q gi|254781215|r 126 AEVS 129 (511)
Q Consensus 126 ~Ei~ 129 (511)
.++.
T Consensus 89 ~~~~ 92 (206)
T 1vec_A 89 QICI 92 (206)
T ss_dssp HHHH
T ss_pred HHHH
T ss_conf 9998
No 46
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.11 E-value=0.013 Score=33.79 Aligned_cols=164 Identities=12% Similarity=0.053 Sum_probs=83.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCC---CCEEEEEECCHHHH
Q ss_conf 565557845899999999999874056555421012465025765978999999999998089---96699980858999
Q gi|254781215|r 44 PLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRP---GISVICLANSETQL 120 (511)
Q Consensus 44 ~~~~~~~P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p---~~kv~vtApt~~Q~ 120 (511)
.|+.+. .+.++|+.|..|. -+-|.++.|+|||+..-.+++....... .++|+||-|..--+
T Consensus 59 ~LPi~~----~~~~il~~i~~n~------------vvvV~G~TGsGKSTqiPq~Lle~~~~~~~~~~~~I~~tqPRR~aa 122 (235)
T 3llm_A 59 LLPVKK----FESEILEAISQNS------------VVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISA 122 (235)
T ss_dssp TSGGGG----GHHHHHHHHHHCS------------EEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHH
T ss_pred HCCCHH----HHHHHHHHHHHCC------------EEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHH
T ss_conf 499168----8999999999799------------799993898999999999999867642788886599963737999
Q ss_pred HHHHHHHHHHHHHHCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHCCCCCCEEEEECCH
Q ss_conf 99999999999985500013444322222233344432111235786169853035755610021202676149997111
Q gi|254781215|r 121 KTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEA 200 (511)
Q Consensus 121 ~~ilw~Ei~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ea~~G~h~~~~~lvI~DEA 200 (511)
..+ ++........ ..... .+|....+...........|++.--.-... ...+. . ...+|+||+
T Consensus 123 ~s~-----A~rva~e~~~---~~G~~----vGy~ir~e~~~~~~~t~i~y~T~g~lLr~~---~~~L~-~-~s~IIiDEv 185 (235)
T 3llm_A 123 VSV-----AERVAFERGE---EPGKS----CGYSVRFESILPRPHASIMFCTVGVLLRKL---EAGIR-G-ISHVIVDEI 185 (235)
T ss_dssp HHH-----HHHHHHTTTC---CTTSS----EEEEETTEEECCCSSSEEEEEEHHHHHHHH---HHCCT-T-CCEEEECCT
T ss_pred HHH-----HHHHHHHHCC---CCCCE----ECEEEECCCCCCCCCCEEEECCCCEEEECC---CCCCC-C-CCCEECCHH
T ss_conf 999-----9999998289---99986----051786674468887147860302000011---03455-5-312000057
Q ss_pred HCCC---HHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHHHH
Q ss_conf 0299---78898888885079981389982389987655676530
Q gi|254781215|r 201 SGTP---DVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFN 242 (511)
Q Consensus 201 sgI~---d~i~e~i~~~Lt~~g~~~~~i~~~nP~~~~g~fy~~~~ 242 (511)
+--+ |.+.-.+.-.+... ...+++.+|-.- ....|-+.|.
T Consensus 186 HERs~~tD~lL~llk~~~~~~-~~lklIlmSATl-d~~~f~~yF~ 228 (235)
T 3llm_A 186 HERDINTDFLLVVLRDVVQAY-PEVRIVLMSATI-DTSMFCEYFF 228 (235)
T ss_dssp TSCCHHHHHHHHHHHHHHHHC-TTSEEEEEECSS-CCHHHHHHTT
T ss_pred HHCCHHHHHHHHHHHHHHHHC-CCCEEEEECCCC-CHHHHHHHCC
T ss_conf 644613899999999999778-996799976878-9699998769
No 47
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural genomics consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=97.10 E-value=0.0037 Score=37.14 Aligned_cols=76 Identities=16% Similarity=0.123 Sum_probs=48.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHH-------------------HCCC
Q ss_conf 557845899999999999874056555421012465025765978999999999998-------------------0899
Q gi|254781215|r 47 GFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMS-------------------TRPG 107 (511)
Q Consensus 47 ~~~~P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~-------------------~~p~ 107 (511)
+|..|-++|++++..+-+ +. -+.|.++.|+|||.....-++-.++ ....
T Consensus 34 g~~~pt~iQ~~ai~~~l~----g~--------dvii~apTGsGKTlay~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~ 101 (417)
T 2i4i_A 34 RYTRPTPVQKHAIPIIKE----KR--------DLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQY 101 (417)
T ss_dssp TCCSCCHHHHHHHHHHHT----TC--------CEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSBC
T ss_pred CCCCCCHHHHHHHHHHHC----CC--------CEEEECCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 999999999999999976----99--------889987899579999999999997531662244555431122342047
Q ss_pred CEEEEEECCHHHHHHHHHHHHHHHHHHC
Q ss_conf 6699980858999999999999999855
Q gi|254781215|r 108 ISVICLANSETQLKTTLWAEVSKWLSLL 135 (511)
Q Consensus 108 ~kv~vtApt~~Q~~~ilw~Ei~k~~~~~ 135 (511)
..+++.+||...+... ...+.+.....
T Consensus 102 ~~~lii~pt~~l~~~~-~~~~~~~~~~~ 128 (417)
T 2i4i_A 102 PISLVLAPTRELAVQI-YEEARKFSYRS 128 (417)
T ss_dssp CSEEEECSSHHHHHHH-HHHHHHHHTTS
T ss_pred CEEEEECCCHHHHHHH-HHHHHHHCCCC
T ss_conf 6189987989999876-66654301355
No 48
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.00 E-value=0.006 Score=35.82 Aligned_cols=149 Identities=17% Similarity=0.138 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHH
Q ss_conf 89999999999987405655542101246502576597899999999999808996699980858999999999999999
Q gi|254781215|r 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWL 132 (511)
Q Consensus 53 ~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~~Q~~~ilw~Ei~k~~ 132 (511)
+||.+..+.+.....++..-| -.-..+..|+|||+++-.++-+.++..+...-.|..- ..-+ .+. .
T Consensus 5 pw~~~~~~~L~~~~~~~~l~h-----a~L~~G~~G~GK~~~a~~~a~~llc~~~~~~~~c~~c--~~c~-----~i~--~ 70 (334)
T 1a5t_A 5 PWLRPDFEKLVASYQAGRGHH-----ALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHC--RGCQ-----LMQ--A 70 (334)
T ss_dssp GGGHHHHHHHHHHHHTTCCCS-----EEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCS--HHHH-----HHH--H
T ss_pred CCCHHHHHHHHHHHHCCCCCE-----EEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCC--HHHH-----HHH--C
T ss_conf 010999999999998699560-----3635899998899999999999708799888888666--8999-----997--5
Q ss_pred HHCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHCCCCCCEEEEECCHHCCCHHHHHHHH
Q ss_conf 85500013444322222233344432111235786169853035755610021202676149997111029978898888
Q gi|254781215|r 133 SLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGIL 212 (511)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ea~~G~h~~~~~lvI~DEAsgI~d~i~e~i~ 212 (511)
...|.-..+.... .......+. .|..... -+.....+.+ -.+|+|||..+.....+++.
T Consensus 71 ~~hpd~~~i~~~~---~~~~i~i~~---------------iR~l~~~--~~~~~~~~~~-kiiiI~~ad~m~~~a~nalL 129 (334)
T 1a5t_A 71 GTHPDYYTLAPEK---GKNTLGVDA---------------VREVTEK--LNEHARLGGA-KVVWVTDAALLTDAAANALL 129 (334)
T ss_dssp TCCTTEEEECCCT---TCSSBCHHH---------------HHHHHHH--TTSCCTTSSC-EEEEESCGGGBCHHHHHHHH
T ss_pred CCCCCEEEECCHH---CCCCCCHHH---------------HHHHHHH--HHHCCCCCCC-EEEEECCHHHCCHHHHHHHH
T ss_conf 7999745432121---046578999---------------9999998--6426446895-79997784544865689999
Q ss_pred HHHCCCCCCEEEEEE-CCCCCCCCH
Q ss_conf 885079981389982-389987655
Q gi|254781215|r 213 GFLTERNANRFWIMT-SNPRRLSGK 236 (511)
Q Consensus 213 ~~Lt~~g~~~~~i~~-~nP~~~~g~ 236 (511)
-+|-.+....+++.+ .+|...--.
T Consensus 130 K~lEeP~~~~~fil~t~~~~~ll~T 154 (334)
T 1a5t_A 130 KTLEEPPAETWFFLATREPERLLAT 154 (334)
T ss_dssp HHHTSCCTTEEEEEEESCGGGSCHH
T ss_pred HHHHCCCCCCEEEEECCCHHHCCCC
T ss_conf 9986597331343204876634352
No 49
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=96.99 E-value=0.0049 Score=36.35 Aligned_cols=61 Identities=16% Similarity=0.119 Sum_probs=43.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHH
Q ss_conf 557845899999999999874056555421012465025765978999999999998089966999808589999999
Q gi|254781215|r 47 GFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTL 124 (511)
Q Consensus 47 ~~~~P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~~Q~~~il 124 (511)
+|+.+++.|++++.++-.+ + -+-|.++.|.|||.+...-++ . .+..++|++|+..-+.+..
T Consensus 22 G~~~~rp~Q~~aI~~iL~G------~------Dvlv~apTGsGKTL~y~LP~l---~--~~~~~lVIsPl~~L~~qq~ 82 (523)
T 1oyw_A 22 GYQQFRPGQEEIIDTVLSG------R------DCLVVMPTGGGKSLCYQIPAL---L--LNGLTVVVSPLISLMKDQV 82 (523)
T ss_dssp CCSSCCTTHHHHHHHHHTT------C------CEEEECSCHHHHHHHHHHHHH---H--SSSEEEEECSCHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHCC------C------CEEEECCCCCHHHHHHHHHHH---H--CCCCEEEECCHHHHHHHHH
T ss_conf 9899998999999999839------9------889986998469999999999---8--0996899887699999999
No 50
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=96.99 E-value=0.016 Score=33.10 Aligned_cols=157 Identities=11% Similarity=0.037 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999998740565554210124650257659789999999999980899669998085899999999999999985
Q gi|254781215|r 55 QLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSL 134 (511)
Q Consensus 55 Q~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~~Q~~~ilw~Ei~k~~~~ 134 (511)
|.+++.+|-.....+..+ ..-|.+--|+|||.++...++-. ...+..+++.+||..=+.+. +..+++....
T Consensus 608 q~~a~~~i~~~~~~~~~~------~~L~~g~tGsGKT~v~~~a~~~a--~~~g~qv~il~PT~~La~Q~-~~~~~~~~~~ 678 (1151)
T 2eyq_A 608 QAQAINAVLSDMCQPLAM------DRLVCGDVGFGKTEVAMRAAFLA--VDNHKQVAVLVPTTLLAQQH-YDNFRDRFAN 678 (1151)
T ss_dssp HHHHHHHHHHHHHSSSCC------EEEEECCCCTTTHHHHHHHHHHH--HTTTCEEEEECSSHHHHHHH-HHHHHHHSTT
T ss_pred HHHHHHHHHHHHHCCCHH------HHEEECCCCCCHHHHHHHHHHHH--HHCCCEEEEEECCHHHHHHH-HHHHHHHHHC
T ss_conf 999999998876068556------66434078986699999999998--63586489994849999999-9999997511
Q ss_pred CHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHH-CCCCCCEEEEECCHHCCCHHHHHHHHH
Q ss_conf 5000134443222222333444321112357861698530357556100212-026761499971110299788988888
Q gi|254781215|r 135 LPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVG-HHNTYGMAIINDEASGTPDVINLGILG 213 (511)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ea~~G-~h~~~~~lvI~DEAsgI~d~i~e~i~~ 213 (511)
.+.+-. .................+..+.-. +..+ .++.+.. +.-.+.-|+|+||+.-......+.+..
T Consensus 679 ~~~~v~----~l~~~~~~~e~~~~l~~~~~G~i~-iiig------T~~~l~~~~~f~~Lgl~iiDE~h~f~~~~~~~~k~ 747 (1151)
T 2eyq_A 679 WPVRIE----MISRFRSAKEQTQILAEVAEGKID-ILIG------THKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKA 747 (1151)
T ss_dssp TTCCEE----EESTTSCHHHHHHHHHHHHTTCCS-EEEE------CTHHHHSCCCCSSEEEEEEESGGGSCHHHHHHHHH
T ss_pred CCCEEE----EEECCCCHHHHHHHHHHHCCCCCC-EEEC------CHHHCCCCCCCCCCCEEEECHHHHHHHHHHHHHHH
T ss_conf 597899----851776288999999874389834-4742------58880276021556734624255521989999985
Q ss_pred HHCCCCCCEEEEEECCCCCCC
Q ss_conf 850799813899823899876
Q gi|254781215|r 214 FLTERNANRFWIMTSNPRRLS 234 (511)
Q Consensus 214 ~Lt~~g~~~~~i~~~nP~~~~ 234 (511)
... +.. .+.++.+|.-.+
T Consensus 748 ~~~--~~~-~l~~sATp~prt 765 (1151)
T 2eyq_A 748 MRA--NVD-ILTLTATPIPRT 765 (1151)
T ss_dssp HHT--TSE-EEEEESSCCCHH
T ss_pred HCC--CCC-EEEECCCCCHHH
T ss_conf 078--975-885105687789
No 51
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=96.98 E-value=0.0043 Score=36.75 Aligned_cols=65 Identities=20% Similarity=0.160 Sum_probs=49.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHC-CCCEEEEEECCHHHHHHH
Q ss_conf 55784589999999999987405655542101246502576597899999999999808-996699980858999999
Q gi|254781215|r 47 GFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTR-PGISVICLANSETQLKTT 123 (511)
Q Consensus 47 ~~~~P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~-p~~kv~vtApt~~Q~~~i 123 (511)
+|..|-+-|++.+-.+-.. + -+.+.|+.|+|||.....-++-.+... ...++++.+||..-+..+
T Consensus 33 g~~~pt~IQ~~aip~il~g------~------dvii~a~TGsGKTlay~lp~i~~i~~~~~~~~~lil~pt~el~~q~ 98 (224)
T 1qde_A 33 GFEEPSAIQQRAIMPIIEG------H------DVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQI 98 (224)
T ss_dssp TCCSCCHHHHHHHHHHHTT------C------CEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHCC------C------CEEEECCCCCCCEEEEECHHHHHHHCCCCCCEEEEEECCHHHHHHH
T ss_conf 9999999999999999779------9------8899898888751245211055551256683399992545254343
No 52
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helicase, alternative splicing, ATP-binding; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=96.96 E-value=0.0032 Score=37.52 Aligned_cols=72 Identities=18% Similarity=0.112 Sum_probs=50.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHH-CCCCEEEEEECCHHHHHHHHH
Q ss_conf 5578458999999999998740565554210124650257659789999999999980-899669998085899999999
Q gi|254781215|r 47 GFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMST-RPGISVICLANSETQLKTTLW 125 (511)
Q Consensus 47 ~~~~P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~-~p~~kv~vtApt~~Q~~~ilw 125 (511)
+|..|-+-|++.+..+-.. + -+.+.|..|+|||.....-++..+.. .....+++.+||..-+..+ .
T Consensus 49 g~~~pt~IQ~~aIp~il~g------~------dvi~~A~TGSGKTlayllp~~~~~~~~~~~~~~lIl~PtreLa~Qi-~ 115 (237)
T 3bor_A 49 GFEKPSAIQQRAIIPCIKG------Y------DVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQI-Q 115 (237)
T ss_dssp TCCSCCHHHHHHHHHHHTT------C------CEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHH-H
T ss_pred CCCCCCHHHHHHHHHHHCC------C------CEEEECCCCCCCCCEEECCCCCCCCCCCCCCEEEEECCHHHHHHHH-H
T ss_conf 9999999999999999779------9------8899798888982168645223424445676289952718899999-9
Q ss_pred HHHHHH
Q ss_conf 999999
Q gi|254781215|r 126 AEVSKW 131 (511)
Q Consensus 126 ~Ei~k~ 131 (511)
..+.+.
T Consensus 116 ~~~~~l 121 (237)
T 3bor_A 116 KVILAL 121 (237)
T ss_dssp HHHHHH
T ss_pred HHHHHH
T ss_conf 999997
No 53
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=96.86 E-value=0.015 Score=33.28 Aligned_cols=75 Identities=11% Similarity=0.106 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHH
Q ss_conf 89999999999987405655542101246502576597899999999999808996699980858999999999999999
Q gi|254781215|r 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWL 132 (511)
Q Consensus 53 ~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~~Q~~~ilw~Ei~k~~ 132 (511)
.=|++++.+|......+.. ..+-|.+.-|+|||.++...++..+. .+.++++.|||..=+.++ ..+++++.
T Consensus 371 ~~Q~~~~~~i~~d~~~~~~------~~~Llqa~TGSGKTlv~llpil~~i~--~g~q~lilaPTreLA~Q~-~~~~k~l~ 441 (780)
T 1gm5_A 371 NAQKRAHQEIRNDMISEKP------MNRLLQGDVGSGKTVVAQLAILDNYE--AGFQTAFMVPTSILAIQH-YRRTVESF 441 (780)
T ss_dssp HHHHHHHHHHHHHHHSSSC------CCCEEECCSSSSHHHHHHHHHHHHHH--HTSCEEEECSCHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCC------CEEEEECCCCCCCHHHHHHHHHHHHH--CCCCEEEEECCHHHHHHH-HHHHHHHH
T ss_conf 8899999999998618987------52899817897460999999999986--389559992528999999-99998761
Q ss_pred HHCH
Q ss_conf 8550
Q gi|254781215|r 133 SLLP 136 (511)
Q Consensus 133 ~~~~ 136 (511)
....
T Consensus 442 ~~~~ 445 (780)
T 1gm5_A 442 SKFN 445 (780)
T ss_dssp TCSS
T ss_pred CCCC
T ss_conf 1578
No 54
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=96.79 E-value=0.021 Score=32.41 Aligned_cols=66 Identities=21% Similarity=0.156 Sum_probs=44.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHH-HCCCCEEEEEECCHHHHHHH
Q ss_conf 5557845899999999999874056555421012465025765978999999999998-08996699980858999999
Q gi|254781215|r 46 EGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMS-TRPGISVICLANSETQLKTT 123 (511)
Q Consensus 46 ~~~~~P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~-~~p~~kv~vtApt~~Q~~~i 123 (511)
.+|..|.+-|++++..+-.. + -+-|.|+.|.|||.....-++-... ......+++..|+...+...
T Consensus 39 ~g~~~pt~iQ~~ai~~il~g------~------dviv~apTGsGKTlaf~lp~l~~~~~~~~~~~~li~~~~~~~~~q~ 105 (400)
T 1s2m_A 39 AGFEKPSPIQEEAIPVAITG------R------DILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQT 105 (400)
T ss_dssp TTCCSCCHHHHHHHHHHHHT------C------CEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHCC------C------CEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHH
T ss_conf 79999999999999999859------9------8899899988378999999999644314785189993538988899
No 55
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- binding, RNA-binding, methylation, mRNA processing; HET: ADP; 2.60A {Homo sapiens}
Probab=96.77 E-value=0.016 Score=33.14 Aligned_cols=76 Identities=17% Similarity=0.146 Sum_probs=54.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCC------CCEEEEEECCHHH
Q ss_conf 5557845899999999999874056555421012465025765978999999999998089------9669998085899
Q gi|254781215|r 46 EGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRP------GISVICLANSETQ 119 (511)
Q Consensus 46 ~~~~~P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p------~~kv~vtApt~~Q 119 (511)
.+|..|-+-|++++..+-... -+.+.|..|+|||.....-++-.+...+ +..+++.+||...
T Consensus 47 ~g~~~pt~iQ~~aip~il~g~------------dviv~a~TGsGKTlay~lpi~~~~~~~~~~~~~~~~~~lil~pt~el 114 (242)
T 3fe2_A 47 QNFTEPTAIQAQGWPVALSGL------------DMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTREL 114 (242)
T ss_dssp TTCCSCCHHHHHHHHHHHHTC------------CEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHH
T ss_pred CCCCCCCHHHHHHHHHHHCCC------------CEEEECCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCEEEEECCCHHH
T ss_conf 799999999999999997699------------88998279999602024611322103543334688579995685788
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 999999999999985
Q gi|254781215|r 120 LKTTLWAEVSKWLSL 134 (511)
Q Consensus 120 ~~~ilw~Ei~k~~~~ 134 (511)
+..+ ..++.+....
T Consensus 115 ~~q~-~~~~~~~~~~ 128 (242)
T 3fe2_A 115 AQQV-QQVAAEYCRA 128 (242)
T ss_dssp HHHH-HHHHHHHHHH
T ss_pred HHHH-HHHHHHHHCC
T ss_conf 7768-9999997234
No 56
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ ATPase, DNA polymerase; HET: ATG ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.70 E-value=0.0084 Score=34.90 Aligned_cols=135 Identities=19% Similarity=0.183 Sum_probs=67.4
Q ss_pred CCCCCCCC--CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 14557775--6555784589999999999987405655542101246502576597899999999999808996699980
Q gi|254781215|r 37 PWGEKGTP--LEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLA 114 (511)
Q Consensus 37 ~w~~~~~~--~~~~~~P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtA 114 (511)
||-++-.| +..+.| |.++.+.+.....++.. |. +-..++.|+|||+++-.++--...-.....++..-
T Consensus 10 pW~ekyrP~~~~diig----~~~~~~~L~~~i~~~~~---p~---lLl~GP~G~GKTtla~~la~~l~~~~~~~~~~~~~ 79 (323)
T 1sxj_B 10 PWVEKYRPQVLSDIVG----NKETIDRLQQIAKDGNM---PH---MIISGMPGIGKTTSVHCLAHELLGRSYADGVLELN 79 (323)
T ss_dssp CHHHHTCCSSGGGCCS----CTHHHHHHHHHHHSCCC---CC---EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEEC
T ss_pred CHHHHHCCCCHHHHCC----CHHHHHHHHHHHHCCCC---CE---EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCEEEE
T ss_conf 2778749798999309----59999999999977999---97---98889599989999999999866997777632441
Q ss_pred CCHHHHHHHHHHHHHHHHHHCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHCCCCCCEE
Q ss_conf 85899999999999999985500013444322222233344432111235786169853035755610021202676149
Q gi|254781215|r 115 NSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMA 194 (511)
Q Consensus 115 pt~~Q~~~ilw~Ei~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ea~~G~h~~~~~l 194 (511)
.+...-...+-.++...... ...... +. .-+
T Consensus 80 ~~~~~~~~~i~~~i~~~~~~----------------------------------------------~~~~~~--~~-~ki 110 (323)
T 1sxj_B 80 ASDDRGIDVVRNQIKHFAQK----------------------------------------------KLHLPP--GK-HKI 110 (323)
T ss_dssp TTSCCSHHHHHTHHHHHHHB----------------------------------------------CCCCCT--TC-CEE
T ss_pred CCCCCCHHHHHHHHHHHHHH----------------------------------------------CCCCCC--CC-EEE
T ss_conf 10015749999999987652----------------------------------------------023667--76-489
Q ss_pred EEECCHHCCCHHHHHHHHHHHCCCCCCEEEEEECCC
Q ss_conf 997111029978898888885079981389982389
Q gi|254781215|r 195 IINDEASGTPDVINLGILGFLTERNANRFWIMTSNP 230 (511)
Q Consensus 195 vI~DEAsgI~d~i~e~i~~~Lt~~g~~~~~i~~~nP 230 (511)
+|+||+..+......++...+........++.+.|.
T Consensus 111 iiide~d~~~~~~q~~l~~~~e~~~~~~~~i~~~~~ 146 (323)
T 1sxj_B 111 VILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQ 146 (323)
T ss_dssp EEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCEEEEEECCC
T ss_conf 998411111100221455401356532134430364
No 57
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=96.68 E-value=0.0081 Score=35.00 Aligned_cols=136 Identities=15% Similarity=0.035 Sum_probs=61.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 46502576597899999999999808996699980858999999999999999855000134443222222333444321
Q gi|254781215|r 80 GAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLH 159 (511)
Q Consensus 80 ~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~~Q~~~ilw~Ei~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (511)
+.|.+.-|+|||......++..... .+.+++|++||..=+.+ +.+.++...... ......
T Consensus 24 ~vi~~~TGSGKT~~~l~~ll~~~~~-~~~rvlil~PtR~La~q-----v~e~l~g~~v~~--------------~~~~~~ 83 (459)
T 2z83_A 24 TVLDLHPGSGKTRKILPQIIKDAIQ-QRLRTAVLAPTRVVAAE-----MAEALRGLPVRY--------------QTSAVQ 83 (459)
T ss_dssp EEECCCTTSCTTTTHHHHHHHHHHH-TTCCEEEEECSHHHHHH-----HHHHTTTSCEEE--------------CC----
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHH-CCCEEEEEHHHHHHHHH-----HHHHHCCCCCCE--------------EEEEEE
T ss_conf 8999699996889999999998873-79869998679999999-----999956988853--------------645688
Q ss_pred CCCCCCCCEEEEEECCCCCCCCCHHHHCCCCCCEEEEECCHHCCCHHHH--HHHHHHHCCCCCCEEEEEECCCCCCCCHH
Q ss_conf 1123578616985303575561002120267614999711102997889--88888850799813899823899876556
Q gi|254781215|r 160 CSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVIN--LGILGFLTERNANRFWIMTSNPRRLSGKF 237 (511)
Q Consensus 160 ~~~~~~~~~~~~~~~~~s~~~~ea~~G~h~~~~~lvI~DEAsgI~d~i~--e~i~~~Lt~~g~~~~~i~~~nP~~~~g~f 237 (511)
..........+++.-.... .-.....-.+..++|+|||+..+.... ....-.+........+++..+|.+....|
T Consensus 84 ~~~~~~~~I~v~T~~~L~~---~l~~~~~~~~~~~vIIDEaH~~~~~~~~~~~~l~~~~~~~~~~lI~mSAT~p~~~~~~ 160 (459)
T 2z83_A 84 REHQGNEIVDVMCHATLTH---RLMSPNRVPNYNLFVMDEAHFTDPASIAARGYIATKVELGEAAAIFMTATPPGTTDPF 160 (459)
T ss_dssp ----CCCSEEEEEHHHHHH---HHHSCC-CCCCSEEEESSTTCCSHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSS
T ss_pred ECCCCCCCEEEECCHHHHH---HHHCCCCCCCCCEEEEECHHHCCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCEEEC
T ss_conf 1146998889979469999---9835655146528999441222545368899999863477672899626987633322
Q ss_pred H
Q ss_conf 7
Q gi|254781215|r 238 Y 238 (511)
Q Consensus 238 y 238 (511)
-
T Consensus 161 ~ 161 (459)
T 2z83_A 161 P 161 (459)
T ss_dssp C
T ss_pred C
T ss_conf 4
No 58
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase, transferase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=96.63 E-value=0.014 Score=33.59 Aligned_cols=44 Identities=14% Similarity=0.017 Sum_probs=30.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHH
Q ss_conf 246502576597899999999999808996699980858999999
Q gi|254781215|r 79 KGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTT 123 (511)
Q Consensus 79 r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~~Q~~~i 123 (511)
.+-|.+.-|+|||......++.... ..+.++++++||..=+.++
T Consensus 21 ~~vl~~~TGsGKT~~~l~~il~~~~-~~~~rvLvL~PtR~La~Qv 64 (451)
T 2jlq_A 21 LTIMDLHPGAGKTKRILPSIVREAL-LRRLRTLILAPTRVVAAEM 64 (451)
T ss_dssp EEEECCCTTSSCCTTHHHHHHHHHH-HTTCCEEEEESSHHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHH-CCCCEEEEEHHHHHHHHHH
T ss_conf 7899958999788999999999987-0798699985099999999
No 59
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=96.59 E-value=0.015 Score=33.32 Aligned_cols=135 Identities=13% Similarity=0.016 Sum_probs=60.9
Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 65025765978999999999998089966999808589999999999999998550001344432222223334443211
Q gi|254781215|r 81 AISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHC 160 (511)
Q Consensus 81 aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~~Q~~~ilw~Ei~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (511)
-|.+.-|+|||+.+...++.... ..+.+++|++||..=+.+ +.+.++..+.... .... ..
T Consensus 6 vl~~~tGSGKT~~~l~~ll~~~~-~~~~rvLvl~PtR~La~q-----v~~~L~~~~~~~~----~~~~----------~~ 65 (431)
T 2v6i_A 6 VLDLHPGAGKTRRVLPQLVREAV-KKRLRTVILAPTRVVASE-----MYEALRGEPIRYM----TPAV----------QS 65 (431)
T ss_dssp EEECCTTSCTTTTHHHHHHHHHH-HTTCCEEEEESSHHHHHH-----HHHHTTTSCEEEC--------------------
T ss_pred EEECCCCCCHHHHHHHHHHHHHH-CCCCEEEEEHHHHHHHHH-----HHHHHHCCCCCEE----EEEE----------EE
T ss_conf 99938984989999999999876-579849999428999999-----9999847788526----6789----------87
Q ss_pred CCCCCCCEEEEEECCCCCCCCCHHHHCCCCCCEEEEECCHHCCCHHHHHH--HHHHHCCCCCCEEEEEECCCCCCCCHHH
Q ss_conf 12357861698530357556100212026761499971110299788988--8888507998138998238998765567
Q gi|254781215|r 161 SLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLG--ILGFLTERNANRFWIMTSNPRRLSGKFY 238 (511)
Q Consensus 161 ~~~~~~~~~~~~~~~~s~~~~ea~~G~h~~~~~lvI~DEAsgI~d~i~e~--i~~~Lt~~g~~~~~i~~~nP~~~~g~fy 238 (511)
.........+++.-.... .-..+....+..++|+|||+.+++..... ....+...+....+++..+|.+....|-
T Consensus 66 ~~~~~~~I~v~T~~~l~~---~l~~~~~~~~~~~IIiDEaH~~~~~~~~~~~~l~~~~~~~~~~~i~mSAT~p~~~~~~~ 142 (431)
T 2v6i_A 66 ERTGNEIVDFMCHSTFTM---KLLQGVRVPNYNLYIMDEAHFLDPASVAARGYIETRVSMGDAGAIFMTATPPGTTEAFP 142 (431)
T ss_dssp ---CCCSEEEEEHHHHHH---HHHHTCCCCCCSEEEEESTTCCSHHHHHHHHHHHHHHHTTSCEEEEEESSCTTCCCSSC
T ss_pred EECCCCEEEEECHHHHHH---HHHCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCEEEEC
T ss_conf 415998699978599999---98668543660589995020366416888668998642667758999658876456601
No 60
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ ATPase, DNA polymerase; HET: ATG ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.55 E-value=0.014 Score=33.52 Aligned_cols=143 Identities=19% Similarity=0.140 Sum_probs=70.3
Q ss_pred CCCCC--CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHC-CCCEEEE-
Q ss_conf 14557--7756555784589999999999987405655542101246502576597899999999999808-9966999-
Q gi|254781215|r 37 PWGEK--GTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTR-PGISVIC- 112 (511)
Q Consensus 37 ~w~~~--~~~~~~~~~P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~-p~~kv~v- 112 (511)
||-+| ++.+..+.| |.++.+.+.....++.. |. +...++.|+|||+++-.++--..... ....+..
T Consensus 26 pw~eKyrP~~~~divg----~~~~~~~L~~~i~~~~~---~~---lLl~Gp~G~GKTt~a~~la~~~~~~~~~~~~~~~~ 95 (353)
T 1sxj_D 26 PWVEKYRPKNLDEVTA----QDHAVTVLKKTLKSANL---PH---MLFYGPPGTGKTSTILALTKELYGPDLMKSRILEL 95 (353)
T ss_dssp CHHHHTCCSSTTTCCS----CCTTHHHHHHHTTCTTC---CC---EEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEE
T ss_pred CHHHHHCCCCHHHHCC----CHHHHHHHHHHHHCCCC---CE---EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCHHH
T ss_conf 4168658998999139----69999999999976998---75---99889599989999999998447875445440121
Q ss_pred EECCHHHHHHHHHHHHHHHHHHCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHCCCCCC
Q ss_conf 80858999999999999999855000134443222222333444321112357861698530357556100212026761
Q gi|254781215|r 113 LANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYG 192 (511)
Q Consensus 113 tApt~~Q~~~ilw~Ei~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ea~~G~h~~~~ 192 (511)
.+...... ......+....+...... .. ...........
T Consensus 96 ~~~~~~~~-~~~~~~~~~~~~~~~~~~-------------------------------------~~---~~~~~~~~~~~ 134 (353)
T 1sxj_D 96 NASDERGI-SIVREKVKNFARLTVSKP-------------------------------------SK---HDLENYPCPPY 134 (353)
T ss_dssp CSSSCCCH-HHHTTHHHHHHHSCCCCC-------------------------------------CT---THHHHSCCCSC
T ss_pred HCCCCCCC-HHHHHHHHHHHHHHHHHH-------------------------------------HH---HHHHCCCCCCC
T ss_conf 10134573-077889999987744223-------------------------------------56---67650466772
Q ss_pred EEEEECCHHCCCHHHHHHHHHHHCCCCCCEEEEEECCC
Q ss_conf 49997111029978898888885079981389982389
Q gi|254781215|r 193 MAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNP 230 (511)
Q Consensus 193 ~lvI~DEAsgI~d~i~e~i~~~Lt~~g~~~~~i~~~nP 230 (511)
-.+|+||+..+......++..++........++.+.|.
T Consensus 135 kviiiDe~d~l~~~~~~~l~~~~e~~~~~~~~i~~~~~ 172 (353)
T 1sxj_D 135 KIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNY 172 (353)
T ss_dssp EEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESC
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCCCCCCCEEEECCCC
T ss_conf 59999670306899999987520368743223221476
No 61
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic transport, mRNA export, protein interaction; HET: ADP; 3.19A {Homo sapiens}
Probab=96.54 E-value=0.035 Score=31.00 Aligned_cols=77 Identities=17% Similarity=0.151 Sum_probs=48.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHH-HCCCCEEEEEECCHHHHHHHHH
Q ss_conf 557845899999999999874056555421012465025765978999999999998-0899669998085899999999
Q gi|254781215|r 47 GFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMS-TRPGISVICLANSETQLKTTLW 125 (511)
Q Consensus 47 ~~~~P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~-~~p~~kv~vtApt~~Q~~~ilw 125 (511)
+|..|.+-|++++..+-. +.++ -+-|.|..|+|||.....-++-.+. ...+.+++|.+||..-+.++ .
T Consensus 111 g~~~pt~iQ~~aip~il~----~~g~------dvlv~apTGSGKTlaf~lP~l~~l~~~~~~~~~lil~PtreLa~qi-~ 179 (479)
T 3fmp_B 111 GFNRPSKIQENALPLMLA----EPPQ------NLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQT-G 179 (479)
T ss_dssp TCCSCCHHHHHHHHHHTS----BSCC------EEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECSSHHHHHHH-H
T ss_pred CCCCCCHHHHHHHHHHHH----CCCC------CEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHH-H
T ss_conf 999999999999999981----6899------5899848983799999999999763137886699994659999999-9
Q ss_pred HHHHHHHHH
Q ss_conf 999999985
Q gi|254781215|r 126 AEVSKWLSL 134 (511)
Q Consensus 126 ~Ei~k~~~~ 134 (511)
..+.+....
T Consensus 180 ~~~~~~~~~ 188 (479)
T 3fmp_B 180 KVIEQMGKF 188 (479)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHHC
T ss_conf 999986302
No 62
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=96.49 E-value=0.021 Score=32.34 Aligned_cols=44 Identities=18% Similarity=0.124 Sum_probs=30.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHH
Q ss_conf 246502576597899999999999808996699980858999999
Q gi|254781215|r 79 KGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTT 123 (511)
Q Consensus 79 r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~~Q~~~i 123 (511)
-+-|.+.-|+|||......++..... .+.+++|++||..-++++
T Consensus 10 ~~vl~~~TGSGKT~~~l~~ll~~~~~-~~~rvlvl~PtR~La~qv 53 (440)
T 1yks_A 10 TTVLDFHPGAGKTRRFLPQILAECAR-RRLRTLVLAPTRVVLSEM 53 (440)
T ss_dssp EEEECCCTTSSTTTTHHHHHHHHHHH-TTCCEEEEESSHHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHC-CCCEEEEEHHHHHHHHHH
T ss_conf 28999889986989999999998754-898399984299999999
No 63
>2kbe_A ATP-dependent RNA helicase DBP5; DBP5P, ATP-binding, cytoplasm, hydrolase, membrane, mRNA transport, nuclear pore complex; NMR {Saccharomyces cerevisiae}
Probab=96.48 E-value=0.021 Score=32.37 Aligned_cols=68 Identities=22% Similarity=0.233 Sum_probs=49.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCC-CCEEEEEECCHHHHHHHH
Q ss_conf 557845899999999999874056555421012465025765978999999999998089-966999808589999999
Q gi|254781215|r 47 GFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRP-GISVICLANSETQLKTTL 124 (511)
Q Consensus 47 ~~~~P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p-~~kv~vtApt~~Q~~~il 124 (511)
+|..|-+-|+..+..+- ++.. +-+.+.|..|+|||.....-++..+.... ...+++.+|+...+..+.
T Consensus 41 g~~~pt~iQ~~aIp~~l----~g~~------~dvli~a~TGsGKTlay~lp~l~~l~~~~~~~~~~il~~~~~~~~~~~ 109 (226)
T 2kbe_A 41 KFQKPSKIQERALPLLL----HNPP------RNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELARQTL 109 (226)
T ss_dssp SSSCCCSHHHHHHHHSS----CCSS------CCEEEESSTTCHHHHHHHHHHHHHCCCTTCCCCEEEECSSHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHH----CCCC------CCEEEECCCCCCCCEEEECCCHHEECCCCCCCEEEEEECCHHHHHHHH
T ss_conf 99999999999999997----4998------888998668987200222340101043578840899825578745577
No 64
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ ATPase, DNA polymerase; HET: ATG ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.47 E-value=0.0061 Score=35.78 Aligned_cols=75 Identities=13% Similarity=0.098 Sum_probs=43.4
Q ss_pred HHCCCCCCEEEEECCHHCCCHHHHHHHHHHHCCCCCCEEEEEECCCC-CCCCHHHHHHHCCCCCCEEEEECCCCCCCCCH
Q ss_conf 12026761499971110299788988888850799813899823899-87655676530352474179840433677897
Q gi|254781215|r 185 VGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPR-RLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDP 263 (511)
Q Consensus 185 ~G~h~~~~~lvI~DEAsgI~d~i~e~i~~~Lt~~g~~~~~i~~~nP~-~~~g~fy~~~~~~~~~w~~~~i~~~~~p~~~~ 263 (511)
.+..+.+ -.+|+||+..+......++...+........+++++|.. .....+. ++-..+++ +..++
T Consensus 129 ~~~~~~~-kiiiide~d~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~-------sR~~~i~~-----~~~~~ 195 (354)
T 1sxj_E 129 DGLAHRY-KCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIK-------SQCLLIRC-----PAPSD 195 (354)
T ss_dssp -----CC-EEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEEEEESCSCSSCHHHH-------TTSEEEEC-----CCCCH
T ss_pred CCCCCCC-EEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEHHHCCHHHHHHHHHH-------CCCEEEEC-----CCCCH
T ss_conf 6556772-59998454322246778998753331444110443022655446674-------66328980-----79799
Q ss_pred HHHHHHHHH
Q ss_conf 789999975
Q gi|254781215|r 264 SFHEGIIAR 272 (511)
Q Consensus 264 ~~ie~~~~~ 272 (511)
+.+.+....
T Consensus 196 ~~~~~~L~~ 204 (354)
T 1sxj_E 196 SEISTILSD 204 (354)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
T ss_conf 999999999
No 65
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A
Probab=96.46 E-value=0.0087 Score=34.79 Aligned_cols=60 Identities=22% Similarity=0.202 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHH
Q ss_conf 5899999999999874056555421012465025765978999999999998089966999808589999999
Q gi|254781215|r 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTL 124 (511)
Q Consensus 52 ~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~~Q~~~il 124 (511)
-+=|+++++..-.+ + =.-|.++=|+|||++++.++.+ ++.+++.+|+++|||-..+.+++
T Consensus 182 N~~Q~~AV~~al~~---------~---l~lI~GPPGTGKT~ti~~ii~~-l~~~~~~kILv~apTN~Avd~i~ 241 (624)
T 2gk6_A 182 NHSQVYAVKTVLQR---------P---LSLIQGPPGTGKTVTSATIVYH-LARQGNGPVLVCAPSNIAVDQLT 241 (624)
T ss_dssp CHHHHHHHHHHHTC---------S---EEEEECCTTSCHHHHHHHHHHH-HHTSSSCCEEEEESSHHHHHHHH
T ss_pred CHHHHHHHHHHHCC---------C---CEEEECCCCCCHHHHHHHHHHH-HHHCCCCCEEEEECCHHHHHHHH
T ss_conf 99999999999639---------9---7599889999830899999999-99706897999938779999999
No 66
>2wbn_A G2P, terminase large subunit; large terminase, nuclease, viral protein, DNA packaging; 1.90A {Bacillus phage SPP1} PDB: 2wc9_A
Probab=96.43 E-value=0.04 Score=30.61 Aligned_cols=151 Identities=13% Similarity=0.166 Sum_probs=85.0
Q ss_pred CCEEEEEEECCCCCCCCEEEEE----ECCCEEEEEEE--CCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHH
Q ss_conf 9708999623334784179998----22755899873--27789889999999999861888299800687636889898
Q gi|254781215|r 315 YAPLIMGCDIAEEGGDNTVVVL----RRGPVIEHLFD--WSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLE 388 (511)
Q Consensus 315 ~~~~viGvDVAr~G~D~svi~~----r~G~~v~~~~~--~~~~d~~~~a~~i~~~~~~~~~~~i~iD~~GvG~gV~d~L~ 388 (511)
...+..|+|.+. .+|.+++.. ..+..+..+++ ..+..+.+++..|.+... ....+.+| .+-|....+.++
T Consensus 48 ~~~~~~GiDfG~-~~dpta~v~~~~d~~~~~~yi~~E~y~~~~t~~~~a~~i~~~~~--~~~~~~~~-~a~~~~~~~~~~ 123 (212)
T 2wbn_A 48 FDNIRQGLDFGY-GPDPLAFVRWHYDKRKNRIYAIDELVDHKVSLKRTADFVRKNKY--ESARIIAD-SSEPRSIDALKL 123 (212)
T ss_dssp CCCEEEEEECCB-TTBCEEEEEEEEETTTTEEEEEEEEEESSCCHHHHHHHHHHTTC--TTSCEEEC-TTCHHHHHHHHH
T ss_pred CCCEEEEEECCC-CCCCCEEEEEEEECCCCEEEEEEEHEECCCCHHHHHHHHHHHCC--CCCEEEEC-CCCHHHHHHHHH
T ss_conf 672699785499-98885899999989899999987210058999999999997478--88759987-888889999999
Q ss_pred HCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC-----CCHHHHHHHHHCCCEEEECCCCEEEEEECHHHCC
Q ss_conf 64982798427777664025522799999999999970899-----9818999998579679987998499984125489
Q gi|254781215|r 389 MLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASL-----INHSGLIQNLKSLKSFIVPNTGELAIESKRVKGA 463 (511)
Q Consensus 389 ~~g~~v~~v~~~~~~~~~~~y~N~rae~~~~~re~l~~g~l-----~~d~~l~~el~~~~~~~~~~~gki~ie~Kkkrg~ 463 (511)
+.|++........+ |-.-.. -.+++.+.. .....+++||..-. |+.++.|...-++.++
T Consensus 124 ~~G~~~~~~~~k~~--------~sv~~g----i~~l~~~~~~~~~~~~C~~li~El~~Y~-~d~dk~g~~~~~p~d~--- 187 (212)
T 2wbn_A 124 EHGINRIEGAKKGP--------DSVEHG----ERWLDELDAIVIDPLRTPNIAREFENID-YQTDKNGDPIPRLEDK--- 187 (212)
T ss_dssp TTCCTTEEECCSCG--------GGHHHH----HHHHHTSSEEEECTTTCHHHHHHHHHCC-EEECTTCCEEEEECSS---
T ss_pred HCCCCEEECCCCCC--------CHHHHH----HHHHHCCCCEEEECCCCHHHHHHHHCCC-CCCCCCCCCCCCCCCC---
T ss_conf 78997775466783--------059999----9999728856754775899999997287-1568899866888788---
Q ss_pred CCCCHHHHHHHHHCCCCCCCCCC
Q ss_conf 99898999999975986500025
Q gi|254781215|r 464 KSTDYSDGLMYTFAENPPRSDMD 486 (511)
Q Consensus 464 ~SPD~ADAl~l~fa~~~~~~~~~ 486 (511)
.-+..||+=+++.....++..+
T Consensus 188 -~dH~~DAlRYai~~~~~~~~~~ 209 (212)
T 2wbn_A 188 -DNHTIDATRYAFERDMKKGGVS 209 (212)
T ss_dssp -SCHHHHHHHHHTGGGCC-----
T ss_pred -CCCHHHHHHHHHHHHHCCCCCC
T ss_conf -7618788886030363148777
No 67
>2wv9_A Flavivirin protease NS2B regulatory subunit, flavivirin protease NS3 catalytic subunit...; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=96.39 E-value=0.028 Score=31.62 Aligned_cols=42 Identities=14% Similarity=0.052 Sum_probs=29.3
Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHH
Q ss_conf 6502576597899999999999808996699980858999999
Q gi|254781215|r 81 AISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTT 123 (511)
Q Consensus 81 aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~~Q~~~i 123 (511)
-|.+.-|.|||+..-..++-... ..+.+++|++|+..-+.++
T Consensus 245 iL~APTGSGKTt~il~~Ll~~~~-~~~~rvlilaPtR~LA~qv 286 (673)
T 2wv9_A 245 VLDLHPGAGKTRRILPQIIKDAI-QKRLRTAVLAPTRVVAAEM 286 (673)
T ss_dssp EECCCTTTTTTTTHHHHHHHHHH-HTTCCEEEEESSHHHHHHH
T ss_pred EEEECCCCHHHHHHHHHHHHHCC-CCCCEEEEEHHHHHHHHHH
T ss_conf 99957987199999999998540-3699999995899999999
No 68
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=96.38 E-value=0.0039 Score=36.99 Aligned_cols=72 Identities=18% Similarity=0.149 Sum_probs=47.5
Q ss_pred HCCCCCCC----CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 42145577----75655578458999999999998740565554210124650257659789999999999980899669
Q gi|254781215|r 35 FFPWGEKG----TPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISV 110 (511)
Q Consensus 35 ~~~w~~~~----~~~~~~~~P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv 110 (511)
-|||.++- ....+++..|+.|.+++.++-+. + .+-|.++.|.|||.+...-+ +. .+..+
T Consensus 25 ~fp~~~~~~~~l~~~fg~~~fRp~Q~eaI~~il~G------~------dvlv~aPTGsGKTL~y~LPa----l~-~~~~t 87 (591)
T 2v1x_A 25 DFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAG------K------EVFLVMPTGGGKSLCYQLPA----LC-SDGFT 87 (591)
T ss_dssp CSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTT------C------CEEEECCTTSCTTHHHHHHH----HT-SSSEE
T ss_pred CCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCC------C------CEEEECCCCCHHHHHHHHHH----HH-CCCCE
T ss_conf 89987999999998479999898999999999809------9------88998389856999999999----96-79959
Q ss_pred EEEECCHHHHHHH
Q ss_conf 9980858999999
Q gi|254781215|r 111 ICLANSETQLKTT 123 (511)
Q Consensus 111 ~vtApt~~Q~~~i 123 (511)
+|++|+..-+.+.
T Consensus 88 lVIsPl~aL~~qq 100 (591)
T 2v1x_A 88 LVICPLISLMEDQ 100 (591)
T ss_dssp EEECSCHHHHHHH
T ss_pred EEECCHHHHHHHH
T ss_conf 9996879999999
No 69
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=96.31 E-value=0.0091 Score=34.67 Aligned_cols=68 Identities=19% Similarity=0.182 Sum_probs=46.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHH-CCCCEEEEEECCHHHHHHH
Q ss_conf 55578458999999999998740565554210124650257659789999999999980-8996699980858999999
Q gi|254781215|r 46 EGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMST-RPGISVICLANSETQLKTT 123 (511)
Q Consensus 46 ~~~~~P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~-~p~~kv~vtApt~~Q~~~i 123 (511)
.+|..|.+.|++++..+-. +..+ -+-|.|+.|+|||.....-++-.+.. .....+++.+|+...+..+
T Consensus 43 ~g~~~pt~iQ~~aip~il~----~~~k------dvlv~apTGsGKTl~f~lpil~~l~~~~~~~~~lil~p~~~l~~q~ 111 (412)
T 3fht_A 43 MGFNRPSKIQENALPLMLA----EPPQ------NLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQT 111 (412)
T ss_dssp TTCCSCCHHHHHHHHHHHS----SSCC------CEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHC----CCCC------CEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHH
T ss_conf 7999999999999999975----9999------8899899995789999999997441037874699990749988879
No 70
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=96.21 E-value=0.031 Score=31.28 Aligned_cols=43 Identities=14% Similarity=0.060 Sum_probs=30.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHH
Q ss_conf 24650257659789999999999980899669998085899999
Q gi|254781215|r 79 KGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKT 122 (511)
Q Consensus 79 r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~~Q~~~ 122 (511)
.+-|.+.-|.|||+..-..++.... ..+.+++|++||..-+.+
T Consensus 188 ~tvl~aPTGSGKTt~~l~~ll~~~~-~~~~rvLVlaPTR~LA~q 230 (618)
T 2whx_A 188 LTIMDLHPGAGKTKRILPSIVREAL-KRRLRTLILAPTRVVAAE 230 (618)
T ss_dssp EEEECCCTTSSTTTTHHHHHHHHHH-HTTCCEEEEESSHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHH-CCCCEEEEEHHHHHHHHH
T ss_conf 5999958998899999999999735-569879998799999999
No 71
>3kqn_A Serine protease/ntpase/helicase NS3; helicase-substrate transition-state complex, HCV, NS3 protein, helicase, DNA-binding; HET: ADP; 2.05A {Hepatitis c virus} PDB: 3kql_A* 3kqu_A* 3kqh_A 3kqk_A 2zjo_A* 8ohm_A 1a1v_A* 2f55_A 1hei_A 1jr6_A 1onb_A
Probab=96.02 E-value=0.066 Score=29.24 Aligned_cols=47 Identities=26% Similarity=0.118 Sum_probs=32.4
Q ss_pred EE-EEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHH
Q ss_conf 24-650257659789999999999980899669998085899999999999999
Q gi|254781215|r 79 KG-AISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKW 131 (511)
Q Consensus 79 r~-aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~~Q~~~ilw~Ei~k~ 131 (511)
|+ .|.+.-|+|||+.+... +...+.+++|++||..-+.++ ..++.+.
T Consensus 10 ~v~il~APTGSGKT~~~p~~-----l~~~g~rvLVl~PTReLA~Qv-~~~l~~~ 57 (437)
T 3kqn_A 10 QVAHLHAPTGSGKSTKVPAA-----YAAQGYKVLVLNPSVAATLGF-GAYMSKA 57 (437)
T ss_dssp EEEEEECCTTSSTTTHHHHH-----HHHTTCCEEEEESCHHHHHHH-HHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH-----HHHCCCCEEEECCHHHHHHHH-HHHHHHH
T ss_conf 76999928998699999999-----995799499987579999999-9999998
No 72
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=95.95 E-value=0.026 Score=31.78 Aligned_cols=65 Identities=20% Similarity=0.134 Sum_probs=44.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHH-CCCCEEEEEECCHHHHHHH
Q ss_conf 5578458999999999998740565554210124650257659789999999999980-8996699980858999999
Q gi|254781215|r 47 GFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMST-RPGISVICLANSETQLKTT 123 (511)
Q Consensus 47 ~~~~P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~-~p~~kv~vtApt~~Q~~~i 123 (511)
+|..|.++|++++..+... . -+-|.++.|+|||.....-++-.+.. ....++++.+|+...+...
T Consensus 40 g~~~~t~iQ~~ai~~il~g----~--------dvlv~apTGsGKTl~~~lp~l~~~~~~~~~~~~lil~~~~~~~~~~ 105 (394)
T 1fuu_A 40 GFEEPSAIQQRAIMPIIEG----H--------DVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQI 105 (394)
T ss_dssp TCCSCCHHHHHHHHHHHHT----C--------CEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHCC----C--------CEEEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECHHHHHHHH
T ss_conf 9999999999999999859----9--------8899899984289999999998503368775289995338888899
No 73
>2wjy_A Regulator of nonsense transcripts 1; alternative splicing, nonsense mediated decay, zinc-finger, ATP-binding, polymorphism, metal-binding, UPF2; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=95.92 E-value=0.025 Score=31.88 Aligned_cols=60 Identities=22% Similarity=0.202 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHH
Q ss_conf 5899999999999874056555421012465025765978999999999998089966999808589999999
Q gi|254781215|r 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTL 124 (511)
Q Consensus 52 ~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~~Q~~~il 124 (511)
-+=|.++++.+-.+ | =..|.++=|+|||++++.++.. +...+..+|+|+|||-..+.+++
T Consensus 358 N~sQ~~AV~~al~~---------~---lsLIqGPPGTGKT~Ti~~iI~~-L~~~~~~kILVcApSN~AVD~l~ 417 (800)
T 2wjy_A 358 NHSQVYAVKTVLQR---------P---LSLIQGPPGTGKTVTSATIVYH-LARQGNGPVLVCAPSNIAVDQLT 417 (800)
T ss_dssp CHHHHHHHHHHHTS---------S---EEEEECCTTSCHHHHHHHHHHH-HHTTCSSCEEEEESSHHHHHHHH
T ss_pred CHHHHHHHHHHHCC---------C---CEEEECCCCCCHHHHHHHHHHH-HHHHCCCCEEEEECCHHHHHHHH
T ss_conf 99999999999649---------9---7289899999950999999999-99706898999948669999999
No 74
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.83 E-value=0.081 Score=28.70 Aligned_cols=128 Identities=16% Similarity=0.088 Sum_probs=69.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEE-ECCHHHH
Q ss_conf 775655578458999999999998740565554210124650257659789999999999980899669998-0858999
Q gi|254781215|r 42 GTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICL-ANSETQL 120 (511)
Q Consensus 42 ~~~~~~~~~P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vt-Apt~~Q~ 120 (511)
++.+..+.| |.++++.+.....++.. |. +-+.+..|+|||+++-.++-..........++.. +......
T Consensus 13 P~~~~diig----~~~~~~~l~~~i~~~~~---~~---~Ll~Gp~G~GKTtla~~iak~l~~~~~~~~~~~~n~~~~~~~ 82 (226)
T 2chg_A 13 PRTLDEVVG----QDEVIQRLKGYVERKNI---PH---LLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGI 82 (226)
T ss_dssp CSSGGGCCS----CHHHHHHHHHHHHTTCC---CC---EEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCH
T ss_pred CCCHHHHCC----HHHHHHHHHHHHHCCCC---CE---EEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCH
T ss_conf 998999209----89999999999976999---85---988899999889999999999843555677132346776769
Q ss_pred HHHHHHHHHHHHHHCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHCCCCCCEEEEECCH
Q ss_conf 99999999999985500013444322222233344432111235786169853035755610021202676149997111
Q gi|254781215|r 121 KTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEA 200 (511)
Q Consensus 121 ~~ilw~Ei~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ea~~G~h~~~~~lvI~DEA 200 (511)
+.+...+...... .... ... ..++|+||+
T Consensus 83 -~~~~~~~~~~~~~-----------------------------------------------~~~~--~~~-~~~iiide~ 111 (226)
T 2chg_A 83 -DVVRHKIKEFART-----------------------------------------------APIG--GAP-FKIIFLDEA 111 (226)
T ss_dssp -HHHHHHHHHHHTS-----------------------------------------------CCST--TCS-CEEEEEETG
T ss_pred -HHHHHHHHHHHHC-----------------------------------------------CCCC--CCC-EEEEEECCH
T ss_conf -9999999999860-----------------------------------------------1126--986-699995112
Q ss_pred HCCCHHHHHHHHHHHCCCCCCEEEEEECCC
Q ss_conf 029978898888885079981389982389
Q gi|254781215|r 201 SGTPDVINLGILGFLTERNANRFWIMTSNP 230 (511)
Q Consensus 201 sgI~d~i~e~i~~~Lt~~g~~~~~i~~~nP 230 (511)
..++.....++...|........++.+.+.
T Consensus 112 ~~l~~~~q~~ll~~le~~~~~~~~i~~~~~ 141 (226)
T 2chg_A 112 DALTADAQAALRRTMEMYSKSCRFILSCNY 141 (226)
T ss_dssp GGSCHHHHHHHHHHHHHTTTTEEEEEEESC
T ss_pred HHCCHHHHHHHHHHHHHCCCCCEEEECCCC
T ss_conf 016899999988876427765447736798
No 75
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=95.75 E-value=0.087 Score=28.50 Aligned_cols=128 Identities=16% Similarity=0.068 Sum_probs=72.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCC-CEEEEEECCHHHH
Q ss_conf 775655578458999999999998740565554210124650257659789999999999980899-6699980858999
Q gi|254781215|r 42 GTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPG-ISVICLANSETQL 120 (511)
Q Consensus 42 ~~~~~~~~~P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~-~kv~vtApt~~Q~ 120 (511)
++.+..+.| |.++.+.+.....++.. |. +-..++.|+|||+++-.++--..+.... ....+.+++.+..
T Consensus 21 P~~~~dlig----~~~~~~~L~~~~~~~~~---p~---lll~Gp~G~GKTtla~~lak~~~~~~~~~~~~~~~~~~~~~~ 90 (327)
T 1iqp_A 21 PQRLDDIVG----QEHIVKRLKHYVKTGSM---PH---LLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGI 90 (327)
T ss_dssp CCSTTTCCS----CHHHHHHHHHHHHHTCC---CE---EEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHH
T ss_pred CCCHHHHCC----CHHHHHHHHHHHHCCCC---CE---EEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCH
T ss_conf 998999239----69999999999977999---86---987898999999999999999764014777113445455664
Q ss_pred HHHHHHHHHHHHHHCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHCCCCCCEEEEECCH
Q ss_conf 99999999999985500013444322222233344432111235786169853035755610021202676149997111
Q gi|254781215|r 121 KTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEA 200 (511)
Q Consensus 121 ~~ilw~Ei~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ea~~G~h~~~~~lvI~DEA 200 (511)
..+. ......... ....+....++++||+
T Consensus 91 ~~~~-~~~~~~~~~--------------------------------------------------~~~~~~~~~viiide~ 119 (327)
T 1iqp_A 91 NVIR-EKVKEFART--------------------------------------------------KPIGGASFKIIFLDEA 119 (327)
T ss_dssp HTTH-HHHHHHHHS--------------------------------------------------CCGGGCSCEEEEEETG
T ss_pred HHHH-HHHHHHHHC--------------------------------------------------CCCCCCCEEEEEEECC
T ss_conf 8999-999999863--------------------------------------------------1236887269998676
Q ss_pred HCCCHHHHHHHHHHHCCCCCCEEEEEECCC
Q ss_conf 029978898888885079981389982389
Q gi|254781215|r 201 SGTPDVINLGILGFLTERNANRFWIMTSNP 230 (511)
Q Consensus 201 sgI~d~i~e~i~~~Lt~~g~~~~~i~~~nP 230 (511)
..+......++...+-.......++.+.+.
T Consensus 120 ~~~~~~~~~~Ll~~le~~~~~~~~i~~~~~ 149 (327)
T 1iqp_A 120 DALTQDAQQALRRTMEMFSSNVRFILSCNY 149 (327)
T ss_dssp GGSCHHHHHHHHHHHHHTTTTEEEEEEESC
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEECCCC
T ss_conf 646576899999988505775145523686
No 76
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A*
Probab=95.62 E-value=0.078 Score=28.80 Aligned_cols=102 Identities=17% Similarity=0.035 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHH----CHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCC-CEEEEEE
Q ss_conf 467888999870----70666528866776421455777565557845899999999999874056555421-0124650
Q gi|254781215|r 9 PETEQKLFDLMW----SDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPE-VFKGAIS 83 (511)
Q Consensus 9 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~P~~WQ~e~l~~i~~~~~~~~~~~~~~-~~r~aV~ 83 (511)
|+..+++.+.+. +.......++-++....=.... .++.=...+.+.+.+..........+. ..-+.+.
T Consensus 39 ~~~l~~~~~~L~~~~v~~~~~~~l~~~l~~~~~~~~~~-------~~~~~~~~l~~~L~~~l~~~~~~~~~~~~~vI~lv 111 (296)
T 2px0_A 39 PEPLRKAEKLLQETGIKESTKTNTLKKLLRFSVEAGGL-------TEENVVGKLQEILCDMLPSADKWQEPIHSKYIVLF 111 (296)
T ss_dssp CCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHSSSCC-------CTTTHHHHHHHHHHTTSCCGGGSCCCCCSSEEEEE
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCC-------CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEE
T ss_conf 38999999999986999899999999999873035789-------99999999999999870444444346788889998
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCH
Q ss_conf 2576597899999999999808996699980858
Q gi|254781215|r 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSE 117 (511)
Q Consensus 84 sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~ 117 (511)
...|+|||+++|=++.+++......-.++++-|+
T Consensus 112 GptGvGKTTtiaKLAa~~~~~~~~~v~lit~Dt~ 145 (296)
T 2px0_A 112 GSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTY 145 (296)
T ss_dssp ESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCS
T ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 9999888999999999999957990699980799
No 77
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=95.53 E-value=0.031 Score=31.36 Aligned_cols=72 Identities=19% Similarity=0.242 Sum_probs=46.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHH-CCCCEEEEEECCHHHHHHHHH
Q ss_conf 5578458999999999998740565554210124650257659789999999999980-899669998085899999999
Q gi|254781215|r 47 GFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMST-RPGISVICLANSETQLKTTLW 125 (511)
Q Consensus 47 ~~~~P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~-~p~~kv~vtApt~~Q~~~ilw 125 (511)
+|..|.+.|++++..+-. ++ -+-|.|+.|+|||.....-++-.+.. .....+++.+||...+..+.
T Consensus 27 gf~~~t~iQ~~ai~~~l~----g~--------dviv~apTGsGKTl~y~lp~l~~l~~~~~~~~~~il~pt~~l~~q~~- 93 (391)
T 1xti_A 27 GFEHPSEVQHECIPQAIL----GM--------DVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQIS- 93 (391)
T ss_dssp SCCSCCHHHHHHHHHHTT----TC--------CEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHH-
T ss_pred CCCCCCHHHHHHHHHHHC----CC--------CEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHH-
T ss_conf 999999999999999974----99--------88998999845999999999996341578715999847899998789-
Q ss_pred HHHHHH
Q ss_conf 999999
Q gi|254781215|r 126 AEVSKW 131 (511)
Q Consensus 126 ~Ei~k~ 131 (511)
..+.+.
T Consensus 94 ~~~~~l 99 (391)
T 1xti_A 94 KEYERF 99 (391)
T ss_dssp HHHHHH
T ss_pred HHHHHH
T ss_conf 999999
No 78
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=95.29 E-value=0.04 Score=30.65 Aligned_cols=135 Identities=18% Similarity=0.110 Sum_probs=71.5
Q ss_pred CCCCC--CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 45577--7565557845899999999999874056555421012465025765978999999999998089966999808
Q gi|254781215|r 38 WGEKG--TPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLAN 115 (511)
Q Consensus 38 w~~~~--~~~~~~~~P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtAp 115 (511)
|-++- ..+..+.| |.++.+.+.....++.. |. +-..+..|+|||+++-.++-...+......+...-.
T Consensus 7 w~~ky~P~~~~diig----~~~~~~~l~~~i~~~~~---~~---~L~~Gp~G~GKttla~~la~~l~~~~~~~~~~~~~~ 76 (319)
T 2chq_A 7 WVEKYRPRTLDEVVG----QDEVIQRLKGYVERKNI---PH---LLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNA 76 (319)
T ss_dssp TTTTTSCSSGGGSCS----CHHHHHHHHTTTTTTCC---CC---EEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEET
T ss_pred HHHCCCCCCHHHHCC----HHHHHHHHHHHHHCCCC---CE---EEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEC
T ss_conf 224179998999139----59999999999977999---87---998897999999999999997344567876477535
Q ss_pred CHHHHHHHHHHHHHHHHHHCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHCCCCCCEEE
Q ss_conf 58999999999999999855000134443222222333444321112357861698530357556100212026761499
Q gi|254781215|r 116 SETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAI 195 (511)
Q Consensus 116 t~~Q~~~ilw~Ei~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ea~~G~h~~~~~lv 195 (511)
+...-.+....++... +.. ....+.....+
T Consensus 77 ~~~~~~~~~~~~~~~~-----------------------------------------~~~---------~~~~~~~~~~i 106 (319)
T 2chq_A 77 SDERGIDVVRHKIKEF-----------------------------------------ART---------APIGGAPFKII 106 (319)
T ss_dssp TSTTCTTTSSHHHHHH-----------------------------------------HHS---------CCSSSCCCEEE
T ss_pred CCCCCHHHHHHHHHHH-----------------------------------------HHH---------HHCCCCCEEEE
T ss_conf 6777637899999998-----------------------------------------874---------44069964899
Q ss_pred EECCHHCCCHHHHHHHHHHHCCCCCCEEEEEECCCCC
Q ss_conf 9711102997889888888507998138998238998
Q gi|254781215|r 196 INDEASGTPDVINLGILGFLTERNANRFWIMTSNPRR 232 (511)
Q Consensus 196 I~DEAsgI~d~i~e~i~~~Lt~~g~~~~~i~~~nP~~ 232 (511)
++||+..+......++...+........++.+.|...
T Consensus 107 iide~d~l~~~~q~~ll~~le~~~~~~~~i~~~~~~~ 143 (319)
T 2chq_A 107 FLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVS 143 (319)
T ss_dssp EEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGG
T ss_pred EEECCCCCCHHHHHHHHHHHHCCCCCCEECCCCCCCC
T ss_conf 9725331679999999877612786511102568501
No 79
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=95.25 E-value=0.13 Score=27.41 Aligned_cols=150 Identities=13% Similarity=0.146 Sum_probs=72.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHH
Q ss_conf 77565557845899999999999874056555421012465025765978999999999998089966999808589999
Q gi|254781215|r 42 GTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLK 121 (511)
Q Consensus 42 ~~~~~~~~~P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~~Q~~ 121 (511)
+..+..+.| |.++.+.+.....++..-| -+-..+..|+|||+++-.++-...+..+....-|.. -..-+
T Consensus 12 P~~~~d~ig----~~~~~~~l~~~~~~~~~~h-----~~L~~Gp~G~GKt~~a~~la~~l~~~~~~~~~~~~~--~~~~~ 80 (373)
T 1jr3_A 12 PQTFADVVG----QEHVLTALANGLSLGRIHH-----AYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGV--CDNCR 80 (373)
T ss_dssp CCSTTTSCS----CHHHHHHHHHHHHHTCCCS-----EEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSS--SHHHH
T ss_pred CCCHHHCCC----HHHHHHHHHHHHHCCCCCC-----EEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCC--CHHHH
T ss_conf 898998059----6999999999997699771-----476579999889999999999867877887676765--35899
Q ss_pred HHHHHHHHHHHHHCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHCCCCCCEEEEECCHH
Q ss_conf 99999999999855000134443222222333444321112357861698530357556100212026761499971110
Q gi|254781215|r 122 TTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEAS 201 (511)
Q Consensus 122 ~ilw~Ei~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ea~~G~h~~~~~lvI~DEAs 201 (511)
++.. ...+. ....... .. ... +......... +.....+.+ -++|+||+.
T Consensus 81 -----~~~~--~~~~d--~~~~~~~-----------~~--~~i--~~ir~~~~~~------~~~~~~~~~-kviiide~d 129 (373)
T 1jr3_A 81 -----EIEQ--GRFVD--LIEIDAA-----------SR--TKV--EDTRDLLDNV------QYAPARGRF-KVYLIDEVH 129 (373)
T ss_dssp -----HHHT--SCCSS--CEEEETT-----------CS--CCS--SCHHHHHHHT------TSCCSSSSS-EEEEEECGG
T ss_pred -----HHHC--CCCCC--EEEECCC-----------CC--CCH--HHHHHHHHHH------HHCCCCCCC-EEEEEECCC
T ss_conf -----9975--89971--7985221-----------02--889--9999999998------546657997-699986836
Q ss_pred CCCHHHHHHHHHHHCCCCCCEEEEEECC-CCCC
Q ss_conf 2997889888888507998138998238-9987
Q gi|254781215|r 202 GTPDVINLGILGFLTERNANRFWIMTSN-PRRL 233 (511)
Q Consensus 202 gI~d~i~e~i~~~Lt~~g~~~~~i~~~n-P~~~ 233 (511)
.+.....+++..+|-.+....++++++| |.+.
T Consensus 130 ~l~~~a~n~Llk~lEep~~~~~~il~t~~~~~~ 162 (373)
T 1jr3_A 130 MLSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 162 (373)
T ss_dssp GSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGS
T ss_pred CCCHHHHHHHHHHHHCCCCCEEEEEECCCHHHC
T ss_conf 389999999999985788673898844875654
No 80
>2vsf_A XPD, DNA repair helicase RAD3 related protein; NER, TFIIH, hydrolase, ATP-binding, nucleotide-binding, iron sulfur cluster; HET: DNA; 2.9A {Thermoplasma acidophilum}
Probab=94.62 E-value=0.027 Score=31.73 Aligned_cols=54 Identities=22% Similarity=0.247 Sum_probs=35.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHH
Q ss_conf 24650257659789999999999980899669998085899999999999999985
Q gi|254781215|r 79 KGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSL 134 (511)
Q Consensus 79 r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~~Q~~~ilw~Ei~k~~~~ 134 (511)
.+.|-||.|+|||...-..++-+ ....+.+|++..+|..|.+.++ .|+.+....
T Consensus 6 ~~viEApTGtGKTlayL~~al~~-~~~~~~kivi~T~T~~lq~Q~~-~el~~l~~~ 59 (602)
T 2vsf_A 6 GVALESPTGSGKTIMALKSALQY-SSERKLKVLYLVRTNSQEEQVI-KELRSLSST 59 (602)
T ss_dssp EEEECCCSSSSTTHHHHHTTCSS-TTTTSCEEEEEESSHHHHHHHH-HHHHHHHTT
T ss_pred EEEEECCCHHHHHHHHHHHHHHH-HHHCCCEEEEECCCHHHHHHHH-HHHHHHHCC
T ss_conf 59998897389999999999999-9876990999866899999999-999876404
No 81
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=93.94 E-value=0.26 Score=25.46 Aligned_cols=38 Identities=13% Similarity=0.075 Sum_probs=27.9
Q ss_pred EEEEECCHHCCCHHHHHHHHHHHCCCCCCEEEEEECCC
Q ss_conf 49997111029978898888885079981389982389
Q gi|254781215|r 193 MAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNP 230 (511)
Q Consensus 193 ~lvI~DEAsgI~d~i~e~i~~~Lt~~g~~~~~i~~~nP 230 (511)
.++|+||+..++...-.++..+|-.......++++.|-
T Consensus 128 kviiiDe~d~l~~~a~n~Llk~lE~~~~~~~~Il~t~~ 165 (250)
T 1njg_A 128 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD 165 (250)
T ss_dssp EEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCC
T ss_conf 79999781539999999999998627887179996698
No 82
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=93.88 E-value=0.081 Score=28.71 Aligned_cols=34 Identities=32% Similarity=0.472 Sum_probs=27.5
Q ss_pred EEEEEECCC-CCCHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 124650257-659789999999999980899669998
Q gi|254781215|r 78 FKGAISAGR-GIGKTTLNAWLVLWLMSTRPGISVICL 113 (511)
Q Consensus 78 ~r~aV~sgr-G~GKS~l~a~l~lw~l~~~p~~kv~vt 113 (511)
.+++|.||. |+|||++++.|+..++-. +.+|+++
T Consensus 19 ~~IaV~SgKGGvGKTT~a~NLA~aLA~~--GkkVllv 53 (262)
T 2ph1_A 19 SRIAVMSGKGGVGKSTVTALLAVHYARQ--GKKVGIL 53 (262)
T ss_dssp CEEEEECSSSCTTHHHHHHHHHHHHHHT--TCCEEEE
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHC--CCEEEEE
T ss_conf 6999975999887999999999999977--9925764
No 83
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=92.91 E-value=0.39 Score=24.42 Aligned_cols=61 Identities=13% Similarity=0.108 Sum_probs=44.2
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEC-CCCCCHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 784589999999999987405655542101246502-57659789999999999980899669998
Q gi|254781215|r 49 SAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISA-GRGIGKTTLNAWLVLWLMSTRPGISVICL 113 (511)
Q Consensus 49 ~~P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~s-grG~GKS~l~a~l~lw~l~~~p~~kv~vt 113 (511)
.-|+.=..|.++.+...+.-......+ ..++|.| .-|.|||++++.++..++.. +.+|+++
T Consensus 78 ~~p~s~~aEa~R~lrt~l~~~~~~~~~--kvI~VtS~~~G~GKTtva~nLA~~lA~~--GkrVLLI 139 (299)
T 3cio_A 78 DNPADSAVEAVRALRTSLHFAMMETEN--NILMITGATPDSGKTFVSSTLAAVIAQS--DQKVLFI 139 (299)
T ss_dssp HSTTCHHHHHHHHHHHHHHHHTSSCSC--CEEEEEESSSSSCHHHHHHHHHHHHHHT--TCCEEEE
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCC--EEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEE
T ss_conf 699988999999999998764279998--5999977999998899999999999977--9968999
No 84
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=92.67 E-value=0.42 Score=24.21 Aligned_cols=157 Identities=17% Similarity=0.084 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHH-CCCCEEEEEECCHHHHHHHHHHHHHHHHH
Q ss_conf 99999999998740565554210124650257659789999999999980-89966999808589999999999999998
Q gi|254781215|r 55 QLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMST-RPGISVICLANSETQLKTTLWAEVSKWLS 133 (511)
Q Consensus 55 Q~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~-~p~~kv~vtApt~~Q~~~ilw~Ei~k~~~ 133 (511)
..+||..|..|. =+-|.+..|+|||+-+--+++..... ..+++|+||-|..--+..+- ..++....
T Consensus 99 ~~~il~~i~~~~------------v~ii~G~TGsGKTTqvPq~ll~~~~~~~~~~~I~~tQPRRiaA~svA-~RVa~e~~ 165 (773)
T 2xau_A 99 RDEFLKLYQNNQ------------IMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRVAAMSVA-QRVAEEMD 165 (773)
T ss_dssp HHHHHHHHHHCS------------EEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESCHHHHHHHH-HHHHHHTT
T ss_pred HHHHHHHHHHCC------------EEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHH-HHHHHHHC
T ss_conf 999999999799------------69998499898888999999983031379987999289789999999-99999849
Q ss_pred HCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECC-CCCCCCCHHHHCCCCCCEEEEECCHHCCC---HHHHH
Q ss_conf 550001344432222223334443211123578616985303-57556100212026761499971110299---78898
Q gi|254781215|r 134 LLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRT-YSEERPDTFVGHHNTYGMAIINDEASGTP---DVINL 209 (511)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~ea~~G~h~~~~~lvI~DEAsgI~---d~i~e 209 (511)
... -....|.-.+... ........|++--. -+.-. + +..-.. ...+|+||++-=. |.+.-
T Consensus 166 ---~~l----G~~VGY~ir~e~~-----~s~~T~i~~~T~GiLLr~l~--~-d~~L~~-~s~iIlDEvHERs~~tD~ll~ 229 (773)
T 2xau_A 166 ---VKL----GEEVGYSIRFENK-----TSNKTILKYMTDGMLLREAM--E-DHDLSR-YSCIILDEAHERTLATDILMG 229 (773)
T ss_dssp ---CCB----TTTEEEEETTEEE-----CCTTCSEEEEEHHHHHHHHH--H-STTCTT-EEEEEECSGGGCCHHHHHHHH
T ss_pred ---CCC----CCEEEEEECCCCC-----CCCCCEEEEECHHHHHHHHH--H-CCCCCC-CCEEEECCCEECCCCHHHHHH
T ss_conf ---998----8856689557877-----89983699975299999985--4-866567-577995452015703899999
Q ss_pred HHHHHHCCCCCCEEEEEECCCCCCCCHHHHHHH
Q ss_conf 888885079981389982389987655676530
Q gi|254781215|r 210 GILGFLTERNANRFWIMTSNPRRLSGKFYEIFN 242 (511)
Q Consensus 210 ~i~~~Lt~~g~~~~~i~~~nP~~~~g~fy~~~~ 242 (511)
.+.-.+... ...+++.+|-.. ....|-+.|.
T Consensus 230 llk~~~~~r-~~lklIlmSAT~-d~~~f~~yf~ 260 (773)
T 2xau_A 230 LLKQVVKRR-PDLKIIIMSATL-DAEKFQRYFN 260 (773)
T ss_dssp HHHHHHHHC-TTCEEEEEESCS-CCHHHHHHTT
T ss_pred HHHHHHHHC-CCCEEEEECCCC-CHHHHHHHCC
T ss_conf 999999858-884799941775-4788875338
No 85
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=92.52 E-value=0.44 Score=24.08 Aligned_cols=70 Identities=13% Similarity=0.029 Sum_probs=44.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 7565557845899999999999874056555421012465025765978999999999998089966999808
Q gi|254781215|r 43 TPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLAN 115 (511)
Q Consensus 43 ~~~~~~~~P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtAp 115 (511)
..++.|..+.+-|.+++..+.....+-.. ..+ .-+.+.++-|+|||++++.++...+.-.-....+++++
T Consensus 121 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~gl~l~G~~G~GKT~L~~ai~~~l~~~~~~~v~~~~~~ 190 (308)
T 2qgz_A 121 IHLSDIDVNNASRMEAFSAILDFVEQYPS-AEQ--KGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFP 190 (308)
T ss_dssp CCGGGSCCCSHHHHHHHHHHHHHHHHCSC-SSC--CEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHH
T ss_pred CCHHHCCCCCHHHHHHHHHHHHHHHHCCC-CCC--CEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEEHH
T ss_conf 97887579998999999999999984754-678--82899899998589999999999987579718998535
No 86
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=92.31 E-value=0.46 Score=23.92 Aligned_cols=62 Identities=13% Similarity=0.109 Sum_probs=43.6
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEC-CCCCCHHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 784589999999999987405655542101246502-576597899999999999808996699980
Q gi|254781215|r 49 SAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISA-GRGIGKTTLNAWLVLWLMSTRPGISVICLA 114 (511)
Q Consensus 49 ~~P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~s-grG~GKS~l~a~l~lw~l~~~p~~kv~vtA 114 (511)
..|+.=..|.++.+...+.-......+ .-++|.| .-|.|||++++.++..++. -+.+|+++-
T Consensus 66 ~~p~~~~~e~~r~lr~~l~~~~~~~~~--kvi~VtS~~~G~GKTtia~nLA~~lA~--~G~rVLLID 128 (286)
T 3la6_A 66 GNPTDLAIEAIRSLRTSLHFAMMQAQN--NVLMMTGVSPSIGMTFVCANLAAVISQ--TNKRVLLID 128 (286)
T ss_dssp HCTTCHHHHHHHHHHHHHHHHSTTTTC--CEEEEEESSSSSSHHHHHHHHHHHHHT--TTCCEEEEE
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCC--EEEEEECCCCCCCHHHHHHHHHHHHHH--CCCEEEEEE
T ss_conf 699987999999999998774159998--189997799999889999999999997--799189983
No 87
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=92.26 E-value=0.28 Score=25.33 Aligned_cols=43 Identities=21% Similarity=0.313 Sum_probs=34.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHH--CCCCEEEEEECCHHHHHH
Q ss_conf 4650257659789999999999980--899669998085899999
Q gi|254781215|r 80 GAISAGRGIGKTTLNAWLVLWLMST--RPGISVICLANSETQLKT 122 (511)
Q Consensus 80 ~aV~sgrG~GKS~l~a~l~lw~l~~--~p~~kv~vtApt~~Q~~~ 122 (511)
+.|.||=|+|||+....-+.+.+.. -++.+|++++=|..-+.+
T Consensus 27 ~lV~AgAGSGKT~~L~~ri~~Li~~~~~~p~~IL~lTFTnkAA~E 71 (724)
T 1pjr_A 27 LLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAARE 71 (724)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHH
T ss_pred EEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECHHHHHHH
T ss_conf 899982844899999999999998099894019999531999999
No 88
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=92.24 E-value=0.12 Score=27.52 Aligned_cols=39 Identities=28% Similarity=0.401 Sum_probs=29.9
Q ss_pred CCEEEEEECCC-CCCHHHHHHHHHHHHHHHCCCCEEEEE-ECC
Q ss_conf 10124650257-659789999999999980899669998-085
Q gi|254781215|r 76 EVFKGAISAGR-GIGKTTLNAWLVLWLMSTRPGISVICL-ANS 116 (511)
Q Consensus 76 ~~~r~aV~sgr-G~GKS~l~a~l~lw~l~~~p~~kv~vt-Apt 116 (511)
.+.+++|.|++ |+|||++++.++.+++.. +.+|+++ +..
T Consensus 5 ~~k~I~v~s~KGGvGKTTia~nlA~~La~~--g~~VllID~D~ 45 (257)
T 1wcv_1 5 KVRRIALANQKGGVGKTTTAINLAAYLARL--GKRVLLVDLDP 45 (257)
T ss_dssp CCCEEEECCSSCCHHHHHHHHHHHHHHHHT--TCCEEEEECCT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHC--CCCEEEEECCC
T ss_conf 876999986999876999999999999977--99889996489
No 89
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=92.19 E-value=0.24 Score=25.75 Aligned_cols=37 Identities=24% Similarity=0.426 Sum_probs=30.2
Q ss_pred EEEEEECCC-CCCHHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 124650257-6597899999999999808996699980
Q gi|254781215|r 78 FKGAISAGR-GIGKTTLNAWLVLWLMSTRPGISVICLA 114 (511)
Q Consensus 78 ~r~aV~sgr-G~GKS~l~a~l~lw~l~~~p~~kv~vtA 114 (511)
.|+.+.||. |+|||++++.++..+++.+.|.+|+++-
T Consensus 18 ~r~i~~sGKGGvGKTT~a~~lA~~lalA~~G~rVLlvD 55 (348)
T 3io3_A 18 LKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLIS 55 (348)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEE
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 45999968985729999999999999995899199994
No 90
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=92.07 E-value=0.19 Score=26.29 Aligned_cols=33 Identities=36% Similarity=0.445 Sum_probs=26.2
Q ss_pred EEEEECCC-CCCHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 24650257-659789999999999980899669998
Q gi|254781215|r 79 KGAISAGR-GIGKTTLNAWLVLWLMSTRPGISVICL 113 (511)
Q Consensus 79 r~aV~sgr-G~GKS~l~a~l~lw~l~~~p~~kv~vt 113 (511)
-++|.|++ |+|||++++.++.+++. .+.+|+++
T Consensus 4 vIav~s~kGGvGKTT~a~nLA~~la~--~g~~Vlli 37 (237)
T 1g3q_A 4 IISIVSGKGGTGKTTVTANLSVALGD--RGRKVLAV 37 (237)
T ss_dssp EEEEECSSTTSSHHHHHHHHHHHHHH--TTCCEEEE
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHH--CCCCEEEE
T ss_conf 99998999997099999999999997--89989999
No 91
>1cu1_A Protein (protease/helicase NS3); bifunctional,protease-helicase, hydrolase; 2.50A {Hepatitis c virus} SCOP: b.47.1.3 c.37.1.14 c.37.1.14
Probab=91.72 E-value=0.54 Score=23.49 Aligned_cols=127 Identities=19% Similarity=0.038 Sum_probs=65.0
Q ss_pred EEEEEEC-CCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 1246502-576597899999999999808996699980858999999999999999855000134443222222333444
Q gi|254781215|r 78 FKGAISA-GRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSD 156 (511)
Q Consensus 78 ~r~aV~s-grG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~~Q~~~ilw~Ei~k~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (511)
.++.|-. .-|.|||+-.--.+ ...+.+++|+.|..--++.+ -.++++.+...+... ..+...
T Consensus 211 ~qV~VL~a~TGSGKTTqVP~~L-----l~~g~kIlV~qPRRvAA~sV-A~rvae~lg~~~g~~-----------vg~~~~ 273 (645)
T 1cu1_A 211 FQVAHLHAPTGSGKSTKVPAAY-----AAQGYKVLVLNPSVAATLGF-GAYMSKAHGIDPNIR-----------TGVRTI 273 (645)
T ss_dssp CEEEEEECCSSSSTTTHHHHHH-----HTTTCCEEEEESCHHHHHHH-HHHHHHHTSSCCEEE-----------CSSCCB
T ss_pred CCEEEEECCCCCCHHHHHHHHH-----HHCCCCEEEECCCHHHHHHH-HHHHHHHHCCCCCCE-----------EEEEEE
T ss_conf 7389997689999889999999-----97799599977768999999-999999858997628-----------858996
Q ss_pred CCCCCCCCCCCEEEEE-ECCCCCCCCCHHHHCCCCCCEEEEECCHHCCCH---HHHHHHHHHHCCCCCCEEEEEECCCCC
Q ss_conf 3211123578616985-303575561002120267614999711102997---889888888507998138998238998
Q gi|254781215|r 157 VLHCSLGIDSKHYSTM-CRTYSEERPDTFVGHHNTYGMAIINDEASGTPD---VINLGILGFLTERNANRFWIMTSNPRR 232 (511)
Q Consensus 157 ~~~~~~~~~~~~~~~~-~~~~s~~~~ea~~G~h~~~~~lvI~DEAsgI~d---~i~e~i~~~Lt~~g~~~~~i~~~nP~~ 232 (511)
.......+++ +.... +... +-.+..++|+||++.-+. .....+...+...+....++|..+|.+
T Consensus 274 ------t~~T~I~~~T~G~lL~-~~~~-----~L~~ysvIImDEaHERd~~SDlllGll~~~~~~~~~lkvIlMSATppg 341 (645)
T 1cu1_A 274 ------TTGAPVTYSTYGKFLA-DGGC-----SGGAYDIIICDECHSTDSTTILGIGTVLDQAETAGARLVVLATATPPG 341 (645)
T ss_dssp ------CCCCSEEEEEHHHHHH-HTSC-----CTTSCSEEEEETTTCCSHHHHHHHHHHHHHTTTTTCSEEEEEESSCTT
T ss_pred ------CCCEEEEEECCHHHHH-CCCC-----HHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf ------6990699988588986-4731-----005888999958601888899999999999874888279995676574
Q ss_pred C
Q ss_conf 7
Q gi|254781215|r 233 L 233 (511)
Q Consensus 233 ~ 233 (511)
.
T Consensus 342 ~ 342 (645)
T 1cu1_A 342 S 342 (645)
T ss_dssp C
T ss_pred C
T ss_conf 3
No 92
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=91.71 E-value=0.18 Score=26.50 Aligned_cols=43 Identities=16% Similarity=0.192 Sum_probs=34.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHH--CCCCEEEEEECCHHHHH
Q ss_conf 24650257659789999999999980--89966999808589999
Q gi|254781215|r 79 KGAISAGRGIGKTTLNAWLVLWLMST--RPGISVICLANSETQLK 121 (511)
Q Consensus 79 r~aV~sgrG~GKS~l~a~l~lw~l~~--~p~~kv~vtApt~~Q~~ 121 (511)
.+.|.+|=|+|||+.+...+.+.+.. .++.+|+|++-|..-+.
T Consensus 17 ~~lV~AgAGSGKT~tL~~ri~~Ll~~~~~~p~~Il~lTFT~~Aa~ 61 (673)
T 1uaa_A 17 PCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAR 61 (673)
T ss_dssp EEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHHHHCCCCCHHHEEEECCHHHHHH
T ss_conf 989998185489999999999999818989615988655599999
No 93
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=91.22 E-value=0.61 Score=23.17 Aligned_cols=38 Identities=21% Similarity=0.046 Sum_probs=28.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCH
Q ss_conf 246502576597899999999999808996699980858
Q gi|254781215|r 79 KGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSE 117 (511)
Q Consensus 79 r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~ 117 (511)
-+.+....|+|||+.++=++.|+.. ......++++-|+
T Consensus 102 vi~~vG~~G~GKTTTiaKLA~~~~~-~~~kv~lva~Dt~ 139 (302)
T 3b9q_A 102 VIMIVGVNGGGKTTSLGKLAHRLKN-EGTKVLMAAGDTF 139 (302)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHH-TTCCEEEECCCCS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-CCCCCCEECCCCC
T ss_conf 9997579888677499999999997-6998732115657
No 94
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=91.00 E-value=0.64 Score=23.04 Aligned_cols=62 Identities=18% Similarity=0.191 Sum_probs=43.5
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECC-CCCCHHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 7845899999999999874056555421012465025-76597899999999999808996699980
Q gi|254781215|r 49 SAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAG-RGIGKTTLNAWLVLWLMSTRPGISVICLA 114 (511)
Q Consensus 49 ~~P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sg-rG~GKS~l~a~l~lw~l~~~p~~kv~vtA 114 (511)
..|+.=..|.++.+............+ .-++|.|+ .|.|||++++.++..++.. +.+|+++-
T Consensus 56 ~~~~s~~~e~~r~l~~~l~~~~~~~~~--kvI~vtS~~~g~GKTtia~nLA~~lA~~--G~rVLlID 118 (271)
T 3bfv_A 56 EQPKSPISEKFRGIRSNIMFANPDSAV--QSIVITSEAPGAGKSTIAANLAVAYAQA--GYKTLIVD 118 (271)
T ss_dssp HCTTSHHHHHHHHHHHHHHHSSTTCCC--CEEEEECSSTTSSHHHHHHHHHHHHHHT--TCCEEEEE
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCC--EEEEEECCCCCCCHHHHHHHHHHHHHHC--CCEEEEEE
T ss_conf 699998999999999987763479998--5999974899898899999999999976--99499993
No 95
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=90.71 E-value=0.34 Score=24.75 Aligned_cols=57 Identities=21% Similarity=0.226 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCC-CEEEEE
Q ss_conf 999999999998740565554210124650257659789999999999980899-669998
Q gi|254781215|r 54 WQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPG-ISVICL 113 (511)
Q Consensus 54 WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~-~kv~vt 113 (511)
|=.+++........... ...| +=+.|++|.|+|||+++..++-......++ .+|.++
T Consensus 11 ~~~~~~~~~~~~~~~~~-~~~P--~iIgiaG~~GSGKSTla~~l~~~l~~~~~~~~~v~~i 68 (290)
T 1odf_A 11 YTIEFLDKYIPEWFETG-NKCP--LFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYA 68 (290)
T ss_dssp HHHHHHHHHHHHHHTTT-CCSC--EEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEE
T ss_pred HHHHHHHHHHHHHHCCC-CCCC--EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 79999999999973458-9999--8999678987889999999999999752888707996
No 96
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=90.56 E-value=0.32 Score=24.94 Aligned_cols=35 Identities=23% Similarity=0.410 Sum_probs=24.4
Q ss_pred EEEECCC-CCCHHHHHHHHHHHHHHHCCCCEEEEE-ECCH
Q ss_conf 4650257-659789999999999980899669998-0858
Q gi|254781215|r 80 GAISAGR-GIGKTTLNAWLVLWLMSTRPGISVICL-ANSE 117 (511)
Q Consensus 80 ~aV~sgr-G~GKS~l~a~l~lw~l~~~p~~kv~vt-Apt~ 117 (511)
++|.|+. |+|||+++..++.++.. -+ +|+++ +-..
T Consensus 3 I~v~s~KGGvGKTT~a~nLA~~La~--~G-kVlliD~Dpq 39 (209)
T 3cwq_A 3 ITVASFKGGVGKTTTAVHLSAYLAL--QG-ETLLIDGDPN 39 (209)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHT--TS-CEEEEEECTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHH--CC-CEEEEECCCC
T ss_conf 9998299987499999999999996--89-9899989999
No 97
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=90.38 E-value=0.37 Score=24.50 Aligned_cols=33 Identities=33% Similarity=0.427 Sum_probs=26.7
Q ss_pred EEEEECCC-CCCHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 24650257-659789999999999980899669998
Q gi|254781215|r 79 KGAISAGR-GIGKTTLNAWLVLWLMSTRPGISVICL 113 (511)
Q Consensus 79 r~aV~sgr-G~GKS~l~a~l~lw~l~~~p~~kv~vt 113 (511)
-++|.|++ |+|||++++.++.+... .+.+|+++
T Consensus 4 vI~v~s~KGGvGKTtia~nlA~~la~--~g~kVlli 37 (263)
T 1hyq_A 4 TITVASGKGGTGKTTITANLGVALAQ--LGHDVTIV 37 (263)
T ss_dssp EEEEEESSSCSCHHHHHHHHHHHHHH--TTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHH--CCCCEEEE
T ss_conf 99998999987199999999999996--89989999
No 98
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold, motor, ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=89.92 E-value=0.56 Score=23.38 Aligned_cols=35 Identities=26% Similarity=0.299 Sum_probs=23.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 24650257659789999999999980899669998
Q gi|254781215|r 79 KGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICL 113 (511)
Q Consensus 79 r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vt 113 (511)
|..+.++.|+|||+++..++.+-...++.+.+++.
T Consensus 176 R~lI~g~~gtGKT~Ll~~ia~~~~~~~~~~v~~v~ 210 (422)
T 3ice_A 176 RGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVL 210 (422)
T ss_dssp EEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEEEE
T ss_pred EEEEECCCCCCCCHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 36886389987018999999754406998799999
No 99
>2is6_A DNA helicase II; hydrolase/DNA complex; HET: DNA ADP; 2.20A {Escherichia coli} PDB: 2is2_A* 2is1_A* 2is4_A*
Probab=89.89 E-value=0.74 Score=22.64 Aligned_cols=44 Identities=25% Similarity=0.366 Sum_probs=34.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHH--CCCCEEEEEECCHHHHHH
Q ss_conf 24650257659789999999999980--899669998085899999
Q gi|254781215|r 79 KGAISAGRGIGKTTLNAWLVLWLMST--RPGISVICLANSETQLKT 122 (511)
Q Consensus 79 r~aV~sgrG~GKS~l~a~l~lw~l~~--~p~~kv~vtApt~~Q~~~ 122 (511)
.+.|.+|=|+|||+.+...+.+.+.. .++.+|+|++-|..-+.+
T Consensus 24 ~~lV~AgAGSGKT~tL~~ri~~Li~~~~~~p~~Il~lTFT~~Aa~E 69 (680)
T 2is6_A 24 NLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAE 69 (680)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHHHHHCCCCHHHEEEECCHHHHHHH
T ss_conf 9899984864899999999999998099995039888021999999
No 100
>2gno_A DNA polymerase III, gamma subunit-related protein; TM0771, structural genomics, PSI, protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima MSB8} SCOP: a.80.1.1 c.37.1.20
Probab=89.82 E-value=0.8 Score=22.40 Aligned_cols=116 Identities=15% Similarity=0.093 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHH---CCCCEEEEEEC-----CHHHHHHHHHH
Q ss_conf 99999999998740565554210124650257659789999999999980---89966999808-----58999999999
Q gi|254781215|r 55 QLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMST---RPGISVICLAN-----SETQLKTTLWA 126 (511)
Q Consensus 55 Q~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~---~p~~kv~vtAp-----t~~Q~~~ilw~ 126 (511)
|.|.|+.+-+ ++.. .-....+.-|+|||+++-.++---.-. ||+ +++..| +-+|+|+
T Consensus 5 ~~~~~~~~~~---~~~~------~~~~~~g~~g~gk~~~~~~~~~~i~~~~~~HpD--~~~i~~e~~~I~Id~IR~---- 69 (305)
T 2gno_A 5 QLETLKRIIE---KSEG------ISILINGEDLSYPREVSLELPEYVEKFPPKASD--VLEIDPEGENIGIDDIRT---- 69 (305)
T ss_dssp HHHHHHHHHH---TCSS------EEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTT--EEEECCSSSCBCHHHHHH----
T ss_pred HHHHHHHHHH---CCCC------CEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCC--EEEEECCCCCCCHHHHHH----
T ss_conf 9999999997---6999------749888999988799999999997365677998--898707767899899999----
Q ss_pred HHHHHHHHCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHCCCCCCEEEEECCHHCCCHH
Q ss_conf 99999985500013444322222233344432111235786169853035755610021202676149997111029978
Q gi|254781215|r 127 EVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDV 206 (511)
Q Consensus 127 Ei~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ea~~G~h~~~~~lvI~DEAsgI~d~ 206 (511)
+.+.....| ..+.+. .+|+|||..+...
T Consensus 70 -l~~~~~~~p--------------------------------------------------~~~~~K-VvIId~ad~lt~~ 97 (305)
T 2gno_A 70 -IKDFLNYSP--------------------------------------------------ELYTRK-YVIVHDCERMTQQ 97 (305)
T ss_dssp -HHHHHTSCC--------------------------------------------------SSSSSE-EEEETTGGGBCHH
T ss_pred -HHHHHHHCC--------------------------------------------------CCCCCE-EEEEECHHHCCHH
T ss_conf -999995355--------------------------------------------------358966-9998575542999
Q ss_pred HHHHHHHHHCCCCCCEEEEE-ECCCCCCCCHH
Q ss_conf 89888888507998138998-23899876556
Q gi|254781215|r 207 INLGILGFLTERNANRFWIM-TSNPRRLSGKF 237 (511)
Q Consensus 207 i~e~i~~~Lt~~g~~~~~i~-~~nP~~~~g~f 237 (511)
...++.-+|-++-....++. +.+|.+.--.-
T Consensus 98 AaNaLLK~LEEPp~~t~fIL~t~~~~kilpTI 129 (305)
T 2gno_A 98 AANAFLKALEEPPEYAVIVLNTRRWHYLLPTI 129 (305)
T ss_dssp HHHHTHHHHHSCCTTEEEEEEESCGGGSCHHH
T ss_pred HHHHHHHHHHCCCCCCEEEEEECCCCCCCCHH
T ss_conf 99999999747997705875205742476300
No 101
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide, SAD phasing; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=89.75 E-value=0.33 Score=24.85 Aligned_cols=32 Identities=25% Similarity=0.328 Sum_probs=23.5
Q ss_pred EEEECCC-CCCHHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 4650257-6597899999999999808996699980
Q gi|254781215|r 80 GAISAGR-GIGKTTLNAWLVLWLMSTRPGISVICLA 114 (511)
Q Consensus 80 ~aV~sgr-G~GKS~l~a~l~lw~l~~~p~~kv~vtA 114 (511)
++|.|+. |+|||++++.++..+. . +.+|+++=
T Consensus 30 I~v~s~KGGVGKTT~a~nLA~~la--~-g~rVllID 62 (267)
T 3k9g_A 30 ITIASIKGGVGKSTSAIILATLLS--K-NNKVLLID 62 (267)
T ss_dssp EEECCSSSSSCHHHHHHHHHHHHT--T-TSCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH--C-CCCEEEEE
T ss_conf 999899997589999999999998--7-99889996
No 102
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=89.51 E-value=0.41 Score=24.24 Aligned_cols=36 Identities=33% Similarity=0.330 Sum_probs=28.0
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 10124650257659789999999999980899669998
Q gi|254781215|r 76 EVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICL 113 (511)
Q Consensus 76 ~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vt 113 (511)
.|++++|+.==|+|||++++.++..++. .|.+|+++
T Consensus 1 ~Mr~IaisGKGGVGKTT~a~nLA~aLA~--~G~rVLlI 36 (289)
T 2afh_E 1 AMRQCAIYGKGGIGKSTTTQNLVAALAE--MGKKVMIV 36 (289)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHHHH--TTCCEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHH--CCCCEEEE
T ss_conf 9609999899987599999999999998--79988999
No 103
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* 1e2l_A* ...
Probab=89.21 E-value=0.22 Score=25.96 Aligned_cols=27 Identities=33% Similarity=0.470 Sum_probs=23.0
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 421012465025765978999999999
Q gi|254781215|r 74 NPEVFKGAISAGRGIGKTTLNAWLVLW 100 (511)
Q Consensus 74 ~~~~~r~aV~sgrG~GKS~l~a~l~lw 100 (511)
.|.+.||+|-...|+|||+++..+.-.
T Consensus 1 mp~ilrI~IEG~iGsGKSTl~~~L~~~ 27 (331)
T 1e2k_A 1 MPTLLRVYIDGPHGMGKTTTTQLLVAL 27 (331)
T ss_dssp CCEEEEEEECSCTTSSHHHHHHHHTC-
T ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 996039999898668899999999998
No 104
>2qy9_A Cell division protein FTSY; SRP receptor, protein targeting, simibi class GTPase, cell cycle, GTP-binding, inner membrane, membrane; 1.90A {Escherichia coli} SCOP: a.24.13.1 c.37.1.10 PDB: 1fts_A
Probab=89.13 E-value=0.91 Score=22.08 Aligned_cols=119 Identities=13% Similarity=0.037 Sum_probs=57.1
Q ss_pred CHHHHHHHHHHHHCH----HHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEE
Q ss_conf 746788899987070----6665288667764214557775655578458999999999998740565554210124650
Q gi|254781215|r 8 NPETEQKLFDLMWSD----EIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAIS 83 (511)
Q Consensus 8 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~w~~~~~~~~~~~~P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~ 83 (511)
+++...||.+.+.+. ++.+.++.-++-... +..+....--..--++.|..+.....+..........-+.+.
T Consensus 30 de~~l~ele~~Ll~aDV~~~~a~~ii~~l~~~~~----~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~p~vil~v 105 (309)
T 2qy9_A 30 DDDLFEELEEQLLIADVGVETTRKIITNLTEGAS----RKQLRDAEALYGLLKEEMGEILAKVDEPLNVEGKAPFVILMV 105 (309)
T ss_dssp SHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH----HTTCCBGGGHHHHHHHHHHHHHHTTCCCCCCCSCTTEEEEEE
T ss_pred CHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEE
T ss_conf 9999999999999859988999999999998734----356785999999999999874102233111146898699996
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHH
Q ss_conf 257659789999999999980899669998085899999999999999985
Q gi|254781215|r 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSL 134 (511)
Q Consensus 84 sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~~Q~~~ilw~Ei~k~~~~ 134 (511)
...|+|||+.+|=++.|+.. .-....++++-|++-+- ...++.|.+.
T Consensus 106 G~nG~GKTTTiaKLA~~~~~-~~~~V~lva~Dt~R~aA---~eQL~~~a~~ 152 (309)
T 2qy9_A 106 GVNGVGKTTTIGKLARQFEQ-QGKSVMLAAGDTFRAAA---VEQLQVWGQR 152 (309)
T ss_dssp CCTTSCHHHHHHHHHHHHHT-TTCCEEEECCCTTCHHH---HHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHH-CCCCCEEEECCCCCHHH---HHHHHHHHHH
T ss_conf 57666765507899999985-67761486445306549---9999998752
No 105
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3idq_A 3a36_A 3a37_A*
Probab=89.02 E-value=0.69 Score=22.84 Aligned_cols=36 Identities=22% Similarity=0.428 Sum_probs=29.5
Q ss_pred EEEEECCC-CCCHHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 24650257-6597899999999999808996699980
Q gi|254781215|r 79 KGAISAGR-GIGKTTLNAWLVLWLMSTRPGISVICLA 114 (511)
Q Consensus 79 r~aV~sgr-G~GKS~l~a~l~lw~l~~~p~~kv~vtA 114 (511)
|+.+.||. |+|||++++.++..++..+.|.+|+++-
T Consensus 19 r~i~~sGKGGVGKTT~a~~lA~~LA~~~~G~rVLlvD 55 (354)
T 2woj_A 19 KWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLIS 55 (354)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 7999979998809999999999999865899599997
No 106
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydrolase; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=88.95 E-value=0.53 Score=23.54 Aligned_cols=35 Identities=23% Similarity=0.361 Sum_probs=25.4
Q ss_pred EEEEEECCC-CCCHHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 124650257-6597899999999999808996699980
Q gi|254781215|r 78 FKGAISAGR-GIGKTTLNAWLVLWLMSTRPGISVICLA 114 (511)
Q Consensus 78 ~r~aV~sgr-G~GKS~l~a~l~lw~l~~~p~~kv~vtA 114 (511)
.|+..-||. |+|||++++.++.+++. .|.+|+++-
T Consensus 8 ~~~i~~sGKGGvGKTTvaa~lA~~lA~--~G~rVLlvD 43 (589)
T 1ihu_A 8 PPYLFFTGKGGVGKTSISCATAIRLAE--QGKRVLLVS 43 (589)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHH--TTCCEEEEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHH--CCCCEEEEE
T ss_conf 848999899600799999999999996--899899997
No 107
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A*
Probab=88.56 E-value=0.75 Score=22.60 Aligned_cols=38 Identities=18% Similarity=0.067 Sum_probs=27.4
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 10124650257659789999999999980899669998
Q gi|254781215|r 76 EVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICL 113 (511)
Q Consensus 76 ~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vt 113 (511)
..+=+.|++|-|+|||+++..+..-......+.+|.++
T Consensus 89 ~PfIIGIaG~sgSGKST~a~~L~~lL~~~~~~~~v~~i 126 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLV 126 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 98899988989878999999999998530789965999
No 108
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=88.28 E-value=0.31 Score=24.98 Aligned_cols=29 Identities=17% Similarity=0.130 Sum_probs=25.0
Q ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 55421012465025765978999999999
Q gi|254781215|r 72 NPNPEVFKGAISAGRGIGKTTLNAWLVLW 100 (511)
Q Consensus 72 ~~~~~~~r~aV~sgrG~GKS~l~a~l~lw 100 (511)
.|.+.+.|++|-...|+|||+++..|.-.
T Consensus 2 ~~m~~~lrI~IEG~iGsGKTTl~~~L~~~ 30 (334)
T 1p6x_A 2 SHMVTIVRIYLDGVYGIGKSTTGRVMASA 30 (334)
T ss_dssp CCEEEEEEEEEECSTTSSHHHHHHHHHSG
T ss_pred CCCCCEEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 98774489999888778899999999998
No 109
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=88.04 E-value=1.1 Score=21.63 Aligned_cols=32 Identities=22% Similarity=0.256 Sum_probs=15.7
Q ss_pred EEEECCC-CCCHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 4650257-659789999999999980899669998
Q gi|254781215|r 80 GAISAGR-GIGKTTLNAWLVLWLMSTRPGISVICL 113 (511)
Q Consensus 80 ~aV~sgr-G~GKS~l~a~l~lw~l~~~p~~kv~vt 113 (511)
++|.|+. |+|||++++.++..++.. +.+|+++
T Consensus 146 I~V~S~kGGvGKTT~A~~LA~~LA~~--g~kVLli 178 (373)
T 3fkq_A 146 VIFTSPCGGVGTSTVAAACAIAHANM--GKKVFYL 178 (373)
T ss_dssp EEEECSSTTSSHHHHHHHHHHHHHHH--TCCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHC--CCEEEEE
T ss_conf 99989999951999999999999838--9959999
No 110
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 subcomplex of F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=88.01 E-value=0.96 Score=21.91 Aligned_cols=44 Identities=27% Similarity=0.231 Sum_probs=30.9
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEE-ECCHHHH
Q ss_conf 0124650257659789999999999980899669998-0858999
Q gi|254781215|r 77 VFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICL-ANSETQL 120 (511)
Q Consensus 77 ~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vt-Apt~~Q~ 120 (511)
.=|+.+-+|.|+|||.++..++.+-..-+.+..|++. --..+.+
T Consensus 151 Gqr~~Ifg~~g~GKt~l~~~i~~~~~~~~~~v~V~~~iGer~rev 195 (473)
T 1sky_E 151 GGKIGLFGGAGVGKTVLIQELIHNIAQEHGGISVFAGVGERTREG 195 (473)
T ss_dssp TCEEEEECCSSSCHHHHHHHHHHHHHHHTCCCEEEEEESSCHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHH
T ss_conf 777455558998879999999986776159879999954035999
No 111
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=87.81 E-value=1.1 Score=21.54 Aligned_cols=54 Identities=24% Similarity=0.350 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 99999999999874056555421012465025765978999999999998089966999808
Q gi|254781215|r 54 WQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLAN 115 (511)
Q Consensus 54 WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtAp 115 (511)
.-..+..++++. .+...| +-+-++-|+|||+|+..+.....-.+|+.+++++..
T Consensus 115 ~A~~aa~~va~~----pg~~NP----l~IyG~~G~GKTHLL~Ai~n~~~~~~~~~~v~y~t~ 168 (440)
T 2z4s_A 115 FAYHAALEVAKH----PGRYNP----LFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS 168 (440)
T ss_dssp HHHHHHHHHHHS----TTSSCC----EEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEH
T ss_pred HHHHHHHHHHHC----CCCCCC----EEEEECCCCCHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 999988778744----799885----799808998678999999999997299710210239
No 112
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=87.70 E-value=0.41 Score=24.25 Aligned_cols=33 Identities=27% Similarity=0.301 Sum_probs=26.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 24650257659789999999999980899669998
Q gi|254781215|r 79 KGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICL 113 (511)
Q Consensus 79 r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vt 113 (511)
|++|++--|+|||++++.++..+. .-+.+|+++
T Consensus 2 kIav~gKGGvGKTt~a~~lA~~la--~~g~~Vlli 34 (254)
T 3kjh_A 2 KLAVAGKGGVGKTTVAAGLIKIMA--SDYDKIYAV 34 (254)
T ss_dssp EEEEECSSSHHHHHHHHHHHHHHT--TTCSCEEEE
T ss_pred EEEEECCCCCHHHHHHHHHHHHHH--HCCCCEEEE
T ss_conf 899989882279999999999999--689968999
No 113
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=87.64 E-value=1.1 Score=21.47 Aligned_cols=68 Identities=13% Similarity=0.019 Sum_probs=40.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 56555784589999999999987405655542101246502576597899999999999808996699980
Q gi|254781215|r 44 PLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLA 114 (511)
Q Consensus 44 ~~~~~~~P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtA 114 (511)
-++.|....+=|.+++..+.....+-.. . ...-+...++-|+|||+++..++...+..+.....++.+
T Consensus 8 ~~dn~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~l~l~G~~GtGKT~La~ai~~~l~~~~~~~~~~i~~ 75 (180)
T 3ec2_A 8 NLDTYHPKNVSQNRALLTIRVFVHNFNP-E--EGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDT 75 (180)
T ss_dssp CSSSCCCCSHHHHHHHHHHHHHHHSCCG-G--GCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHCCC-C--CCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 7114168997899999999999986350-3--597699999999988999999999988605963677514
No 114
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=87.62 E-value=0.84 Score=22.29 Aligned_cols=35 Identities=29% Similarity=0.306 Sum_probs=27.3
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 0124650257659789999999999980899669998
Q gi|254781215|r 77 VFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICL 113 (511)
Q Consensus 77 ~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vt 113 (511)
|.+++|..==|+|||++++.++.+.+. .|.+|+++
T Consensus 1 M~~Iai~gKGGVGKTT~a~nLA~~La~--~G~rVLlI 35 (269)
T 1cp2_A 1 MRQVAIYGKGGIGKSTTTQNLTSGLHA--MGKTIMVV 35 (269)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHT--TTCCEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHH--CCCCEEEE
T ss_conf 979999899987699999999999997--89978999
No 115
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=87.27 E-value=1.2 Score=21.34 Aligned_cols=41 Identities=22% Similarity=0.172 Sum_probs=29.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHH
Q ss_conf 124650257659789999999999980899669998085899
Q gi|254781215|r 78 FKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQ 119 (511)
Q Consensus 78 ~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~~Q 119 (511)
.-+.+.+..|+|||+.++=++.|+.. +-....++++-|++-
T Consensus 105 ~vi~~vG~~G~GKTTT~aKLA~~~~~-~~~kv~lv~~Dt~R~ 145 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGKLAKMFVD-EGKSVVLAAADTFRA 145 (306)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEECTTCH
T ss_pred EEEEEECCCCCCCCCHHHHHHHHHHH-CCCEEEEEECCCCCH
T ss_conf 69999778889843159999999985-798489984356677
No 116
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=86.88 E-value=1.2 Score=21.28 Aligned_cols=34 Identities=6% Similarity=-0.037 Sum_probs=15.0
Q ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8279842777766402552279999999999997
Q gi|254781215|r 392 YHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLE 425 (511)
Q Consensus 392 ~~v~~v~~~~~~~~~~~y~N~rae~~~~~re~l~ 425 (511)
+|.+.+.-+.+...........-+..|.+|..+.
T Consensus 359 fPAIDi~~S~SR~~~~l~~~~~~~~~~~lR~~l~ 392 (427)
T 3l0o_A 359 FPAINLLLSGTRREELLLDEETLKKVWLLRRMLS 392 (427)
T ss_dssp SSCBCSTTCEETTGGGTSCHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHH
T ss_conf 8874876560357510089999999999999998
No 117
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=85.42 E-value=0.54 Score=23.51 Aligned_cols=27 Identities=33% Similarity=0.471 Sum_probs=22.5
Q ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 542101246502576597899999999
Q gi|254781215|r 73 PNPEVFKGAISAGRGIGKTTLNAWLVL 99 (511)
Q Consensus 73 ~~~~~~r~aV~sgrG~GKS~l~a~l~l 99 (511)
..|.+.||+|-...|+|||+++..+.-
T Consensus 45 ~~p~ilRI~IEG~iGsGKTTl~k~La~ 71 (376)
T 1of1_A 45 KMPTLLRVYIDGPHGMGKTTTTQLLVA 71 (376)
T ss_dssp -CCEEEEEEECSSTTSSHHHHHHHHHC
T ss_pred CCCCEEEEEEECCCCCCHHHHHHHHHH
T ss_conf 677626999989876789999999998
No 118
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, protein structure initiative; HET: ATP; 2.20A {Chlorobium tepidum tls}
Probab=84.57 E-value=0.99 Score=21.83 Aligned_cols=34 Identities=21% Similarity=0.317 Sum_probs=24.9
Q ss_pred EEEEECCC-CCCHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 24650257-659789999999999980899669998
Q gi|254781215|r 79 KGAISAGR-GIGKTTLNAWLVLWLMSTRPGISVICL 113 (511)
Q Consensus 79 r~aV~sgr-G~GKS~l~a~l~lw~l~~~p~~kv~vt 113 (511)
-++|.|++ |+|||++++.++..++. +.+.+|+++
T Consensus 6 iI~v~s~kGGvGkTt~a~nlA~~La~-~~~~~vlli 40 (245)
T 3ea0_A 6 VFGFVSAKGGDGGSCIAANFAFALSQ-EPDIHVLAV 40 (245)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHTT-STTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHH-HCCCCEEEE
T ss_conf 99998999976599999999999998-689989999
No 119
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=84.48 E-value=1.3 Score=21.01 Aligned_cols=41 Identities=20% Similarity=0.018 Sum_probs=30.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHH
Q ss_conf 246502576597899999999999808996699980858999
Q gi|254781215|r 79 KGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQL 120 (511)
Q Consensus 79 r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~~Q~ 120 (511)
-+.+....|+|||+.+|=++.|+... -....++++-|++-+
T Consensus 107 villvG~~G~GKTTTiaKLA~~~~~~-g~kV~lva~Dt~R~a 147 (320)
T 1zu4_A 107 IFMLVGVNGTGKTTSLAKMANYYAEL-GYKVLIAAADTFRAG 147 (320)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHT-TCCEEEEECCCSCHH
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHC-CCCCEEEECHHHHHH
T ss_conf 99997787887052899999999873-997403331211088
No 120
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=84.25 E-value=1.7 Score=20.41 Aligned_cols=36 Identities=19% Similarity=0.116 Sum_probs=25.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 124650257659789999999999980899669998
Q gi|254781215|r 78 FKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICL 113 (511)
Q Consensus 78 ~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vt 113 (511)
+=+.|+++-|+|||+++..+..-+--...+.+|.++
T Consensus 81 ~IIGIaG~sgsGKSTla~~L~~lL~~~~~~~~v~li 116 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELI 116 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 899998999887999999999997101699965998
No 121
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide kinase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=84.18 E-value=0.48 Score=23.83 Aligned_cols=24 Identities=21% Similarity=0.346 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 889999999999861888299800
Q gi|254781215|r 353 LRTTNNKISGLVEKYRPDAIIIDA 376 (511)
Q Consensus 353 ~~~~a~~i~~~~~~~~~~~i~iD~ 376 (511)
...+-..+.+++++++...+.|++
T Consensus 304 r~~~~~~~~~~l~~~~~~~~~I~~ 327 (365)
T 1lw7_A 304 RQQFQQLLKKLLDKYKVPYIEIES 327 (365)
T ss_dssp HHHHHHHHHHHHHGGGCCCEEEEC
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 999999999999986998899909
No 122
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein-protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2iyl_D* 2cnw_D* 2j7p_D*
Probab=84.08 E-value=1.1 Score=21.66 Aligned_cols=47 Identities=26% Similarity=0.297 Sum_probs=32.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCH-----HHHHHHHHHHH
Q ss_conf 246502576597899999999999808996699980858-----99999999999
Q gi|254781215|r 79 KGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSE-----TQLKTTLWAEV 128 (511)
Q Consensus 79 r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~-----~Q~~~ilw~Ei 128 (511)
-+.+....|+|||+.+|=++.++... ....+++++-|+ .|++ .|+++
T Consensus 104 vi~lvG~~G~GKTTt~aKlA~~~~~~-~~kv~li~~Dt~R~ga~eQL~--~~a~~ 155 (304)
T 1rj9_A 104 VVLVVGVNGVGKTTTIAKLGRYYQNL-GKKVMFCAGDTFRAAGGTQLS--EWGKR 155 (304)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHTT-TCCEEEECCCCSSTTTTHHHH--HHHHH
T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHH-CCCCEEEECCCCCCHHHHHHH--HHCCC
T ss_conf 99952466777411899999998651-154003421420000678999--85655
No 123
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, structural genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=83.89 E-value=1.7 Score=20.31 Aligned_cols=36 Identities=28% Similarity=0.200 Sum_probs=26.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 124650257659789999999999980899669998
Q gi|254781215|r 78 FKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICL 113 (511)
Q Consensus 78 ~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vt 113 (511)
.-++|..+-|+|||+++..|.--+-....++.++..
T Consensus 23 ~iIgI~G~~gSGKSTla~~L~~~l~~~~~~~~~i~~ 58 (208)
T 3c8u_A 23 QLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPM 58 (208)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEES
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 899988989899999999999997342898157504
No 124
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=83.30 E-value=0.95 Score=21.94 Aligned_cols=53 Identities=17% Similarity=0.159 Sum_probs=34.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 7565557845899999999999874056555421012465025765978999999999
Q gi|254781215|r 43 TPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLW 100 (511)
Q Consensus 43 ~~~~~~~~P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw 100 (511)
+.+..+.| |.++++.+.........+..+ ..-+.....-|+|||+++-.++--
T Consensus 9 ~~l~divG----q~~~~~~l~~~l~~~~~~~~~-~~~iLl~GPpG~GKTtlA~~iA~~ 61 (324)
T 1hqc_A 9 KTLDEYIG----QERLKQKLRVYLEAAKARKEP-LEHLLLFGPPGLGKTTLAHVIAHE 61 (324)
T ss_dssp CSTTTCCS----CHHHHHHHHHHHHHHHHHCSC-CCCCEEECCTTCCCHHHHHHHHHH
T ss_pred CCHHHHCC----HHHHHHHHHHHHHHHHHCCCC-CCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 98888379----899999999999988734899-985999897995199999999998
No 125
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone; HET: MSE; 1.70A {Methylobacterium extorquens AM1} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=83.19 E-value=1.8 Score=20.13 Aligned_cols=55 Identities=22% Similarity=0.174 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 9999999998740565554210124650257659789999999999980899669998085
Q gi|254781215|r 56 LEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANS 116 (511)
Q Consensus 56 ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtApt 116 (511)
++..+++.+.++...+ ...+++|...=|.|||+|...++-.+.. ++.++.++|..
T Consensus 38 ~~~~~~l~~~~~~~~~----~~~~IgItG~PGaGKSTLi~~L~~~~~~--~g~kvavlavD 92 (337)
T 2qm8_A 38 RAAVRDLIDAVLPQTG----RAIRVGITGVPGVGKSTTIDALGSLLTA--AGHKVAVLAVD 92 (337)
T ss_dssp HHHHHHHHHHHGGGCC----CSEEEEEECCTTSCHHHHHHHHHHHHHH--TTCCEEEEEEC
T ss_pred HHHHHHHHHHHHHHCC----CCEEEECCCCCCCCHHHHHHHHHHHHHC--CCCCEEEEECC
T ss_conf 8999999997642068----8259952389998899999999999743--89831123148
No 126
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=83.12 E-value=1.9 Score=20.12 Aligned_cols=43 Identities=16% Similarity=0.085 Sum_probs=26.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 5655578458999999999998740565554210124650257659789999999
Q gi|254781215|r 44 PLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLV 98 (511)
Q Consensus 44 ~~~~~~~P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~ 98 (511)
..+.|.| |+-. |+.+.+...++. -+.|.+.+|+|||+++..++
T Consensus 10 ~~~~fvG-Re~e---l~~L~~~l~~~~--------~v~i~G~~GiGKTsL~~~~~ 52 (350)
T 2qen_A 10 RREDIFD-REEE---SRKLEESLENYP--------LTLLLGIRRVGKSSLLRAFL 52 (350)
T ss_dssp SGGGSCS-CHHH---HHHHHHHHHHCS--------EEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCCC-HHHH---HHHHHHHHHCCC--------EEEEECCCCCCHHHHHHHHH
T ss_conf 8444789-6999---999999984599--------79998499997899999999
No 127
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis 1330}
Probab=82.70 E-value=1.6 Score=20.44 Aligned_cols=28 Identities=14% Similarity=0.400 Sum_probs=14.4
Q ss_pred HHHHHHCCCCEEEEEECCCCHHHHHHHHH
Q ss_conf 99998618882998006876368898986
Q gi|254781215|r 361 SGLVEKYRPDAIIIDANNTGARTCDYLEM 389 (511)
Q Consensus 361 ~~~~~~~~~~~i~iD~~GvG~gV~d~L~~ 389 (511)
...+-+.+|+.|+|...= |.-..+.++.
T Consensus 245 ~~~aLR~~pd~iiiGEiR-~~Ea~~~~~a 272 (361)
T 2gza_A 245 LRSCLRMKPTRILLAELR-GGEAYDFINV 272 (361)
T ss_dssp HHHHTTSCCSEEEESCCC-STHHHHHHHH
T ss_pred HHHHHCCCCCCEECCCCC-CHHHHHHHHH
T ss_conf 998626699950315035-4889999999
No 128
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=82.34 E-value=1.6 Score=20.48 Aligned_cols=52 Identities=19% Similarity=0.202 Sum_probs=34.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCC--CCCCCCCEEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 77565557845899999999999874056--555421012465025765978999999999
Q gi|254781215|r 42 GTPLEGFSAPRSWQLEFMEVVDAHCLNSV--NNPNPEVFKGAISAGRGIGKTTLNAWLVLW 100 (511)
Q Consensus 42 ~~~~~~~~~P~~WQ~e~l~~i~~~~~~~~--~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw 100 (511)
+..|+.+.| |..++..+...+.... ....| -+-.-.+.|+|||+++-.++--
T Consensus 25 P~~l~dvVG----Q~~~~~~l~~~i~~~~~~~~~~~---s~lf~GPPG~GKTTlA~iiA~~ 78 (338)
T 3pfi_A 25 PSNFDGYIG----QESIKKNLNVFIAAAKKRNECLD---HILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCSGGGCCS----CHHHHHHHHHHHHHHHHTTSCCC---CEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCHHHHCC----HHHHHHHHHHHHHHHHHCCCCCC---EEEEECCCCCCHHHHHHHHHHH
T ss_conf 898899569----29999978999999985388888---4898898998799999999984
No 129
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding site, hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=82.07 E-value=1.3 Score=21.17 Aligned_cols=36 Identities=31% Similarity=0.288 Sum_probs=23.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 124650257659789999999999980899669998
Q gi|254781215|r 78 FKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICL 113 (511)
Q Consensus 78 ~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vt 113 (511)
=|+.+-+|.|+|||+++..++.-..-.+.+..|++.
T Consensus 166 Qr~gIfgg~g~GKt~l~~~~~~n~~~~~~~v~V~~~ 201 (498)
T 1fx0_B 166 GKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGG 201 (498)
T ss_dssp CCEEEEECSSSSHHHHHHHHHHHTTTTCSSCEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 777745589988789999999978875699899999
No 130
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta fold and the C-terminal all beta domain., structural genomics, PSI-2; 2.00A {Nostoc SP}
Probab=81.91 E-value=0.86 Score=22.23 Aligned_cols=40 Identities=23% Similarity=0.206 Sum_probs=26.2
Q ss_pred EEEEECCC-CCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHH
Q ss_conf 24650257-6597899999999999808996699980858999
Q gi|254781215|r 79 KGAISAGR-GIGKTTLNAWLVLWLMSTRPGISVICLANSETQL 120 (511)
Q Consensus 79 r~aV~sgr-G~GKS~l~a~l~lw~l~~~p~~kv~vtApt~~Q~ 120 (511)
++.+-+|. |+|||++++.++.+.+. .|.||+++.-+..|.
T Consensus 3 ~Ii~f~GKGGVGKTT~aa~lA~~lA~--~G~rvLlvs~~dp~~ 43 (374)
T 3igf_A 3 LILTFLGKSGVARTKIAIAAAKLLAS--QGKRVLLAGLAEPVL 43 (374)
T ss_dssp EEEEEECSBHHHHHHHHHHHHHHHHH--TTCCEEEEECSCSHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHH--CCCCEEEEECCCCCH
T ss_conf 89999899877299999999999997--899689996798644
No 131
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=81.80 E-value=2.1 Score=19.81 Aligned_cols=46 Identities=15% Similarity=0.125 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 999999999987405655542101246502576597899999999999
Q gi|254781215|r 55 QLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLM 102 (511)
Q Consensus 55 Q~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l 102 (511)
+.+.++++...+..-..... ..-+.+....|+|||+++-.++--..
T Consensus 25 re~~~~~l~~~l~~~i~~~~--~~~~li~GppG~GKTtlar~v~~~L~ 70 (384)
T 2qby_B 25 REDILRDAAIAIRYFVKNEV--KFSNLFLGLTGTGKTFVSKYIFNEIE 70 (384)
T ss_dssp CHHHHHHHHHHHHHHHTTCC--CCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCC--CCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 69999999999999970999--86089987998829999999999987
No 132
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, disease mutation, mitochondrion, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=81.46 E-value=2.1 Score=19.73 Aligned_cols=63 Identities=24% Similarity=0.297 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHCC------CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHH
Q ss_conf 999999999987405------65554210124650257659789999999999980899669998085899
Q gi|254781215|r 55 QLEFMEVVDAHCLNS------VNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQ 119 (511)
Q Consensus 55 Q~e~l~~i~~~~~~~------~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~~Q 119 (511)
.+++++.+..++... ...+.+...++.|...=|.|||+++..++..+.- .+-+|.|.|.--..
T Consensus 46 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~IGitG~PGaGKStli~~l~~~~~~--~g~~vaVla~Dpss 114 (349)
T 2www_A 46 KKELAQVLLQKVLLYHREQEQSNKGKPLAFRVGLSGPPGAGKSTFIEYFGKMLTE--RGHKLSVLAVDPSS 114 (349)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTTCCSCEEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEEECCC--
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHH--CCCEEEEEECCCCC
T ss_conf 6999999999876520233356778887058862179998899999999999984--79717899578786
No 133
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=81.36 E-value=1.9 Score=20.12 Aligned_cols=35 Identities=29% Similarity=0.396 Sum_probs=25.6
Q ss_pred EEEEEECC-CCCCHHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 12465025-76597899999999999808996699980
Q gi|254781215|r 78 FKGAISAG-RGIGKTTLNAWLVLWLMSTRPGISVICLA 114 (511)
Q Consensus 78 ~r~aV~sg-rG~GKS~l~a~l~lw~l~~~p~~kv~vtA 114 (511)
.|+.+-+| =|+|||++++.++++++.. |.+|+++-
T Consensus 19 ~r~i~~~GKGGVGKTT~a~~lA~~lA~~--G~rVLlvd 54 (329)
T 2woo_A 19 LKWIFVGGKGGVGKTTTSCSLAIQMSKV--RSSVLLIS 54 (329)
T ss_dssp CCEEEEECSSSSSHHHHHHHHHHHHHTS--SSCEEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHC--CCCEEEEE
T ss_conf 1699996998682999999999999968--99189995
No 134
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=80.72 E-value=2.3 Score=19.57 Aligned_cols=64 Identities=13% Similarity=0.088 Sum_probs=35.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 55578458999999999998740565554210124650257659789999999999980899669998
Q gi|254781215|r 46 EGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICL 113 (511)
Q Consensus 46 ~~~~~P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vt 113 (511)
..|..-.+=|.++++.+.....+-... ....-+.+.+.-|+|||+|+..++...+- .+..++++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~gl~l~G~~GtGKT~La~ai~~~l~~--~~~~~~~~ 88 (202)
T 2w58_A 25 SDVDLNDDGRIKAIRFAERFVAEYEPG--KKMKGLYLHGSFGVGKTYLLAAIANELAK--RNVSSLIV 88 (202)
T ss_dssp TSSCCSSHHHHHHHHHHHHHHHHCCSS--CCCCEEEEECSTTSSHHHHHHHHHHHHHT--TTCCEEEE
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCC--CCCCEEEEECCCCCCHHHHHHHHHHHHHH--CCCEEEEE
T ss_conf 125669876999999999999954867--76874899899989789999999999753--48828997
No 135
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=80.69 E-value=2.2 Score=19.62 Aligned_cols=35 Identities=29% Similarity=0.231 Sum_probs=24.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 1246502576597899999999999808996699980
Q gi|254781215|r 78 FKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLA 114 (511)
Q Consensus 78 ~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtA 114 (511)
+-+.|+.==|+|||++++.++..++. -|.+|+++-
T Consensus 17 r~if~sGKGGVGKTT~aanlA~~lA~--~G~rVLlvD 51 (334)
T 3iqw_A 17 RWIFVGGKGGVGKTTTSCSLAIQLAK--VRRSVLLLS 51 (334)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHTT--SSSCEEEEE
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHH--CCCCEEEEE
T ss_conf 69999799977199999999999997--899489993
No 136
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=80.63 E-value=2 Score=19.85 Aligned_cols=52 Identities=17% Similarity=0.132 Sum_probs=32.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCC--CCCCCCCEEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 77565557845899999999999874056--555421012465025765978999999999
Q gi|254781215|r 42 GTPLEGFSAPRSWQLEFMEVVDAHCLNSV--NNPNPEVFKGAISAGRGIGKTTLNAWLVLW 100 (511)
Q Consensus 42 ~~~~~~~~~P~~WQ~e~l~~i~~~~~~~~--~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw 100 (511)
+..+..+.| |..++..+...+.... ....+ -+-.-...|+|||+++-.++--
T Consensus 21 P~~l~dvvG----Q~~~~~~l~~~i~~~~~~~~~~~---~lLf~GPPGtGKTTlA~iiA~~ 74 (334)
T 1in4_A 21 PKSLDEFIG----QENVKKKLSLALEAAKMRGEVLD---HVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CSSGGGCCS----CHHHHHHHHHHHHHHHHHTCCCC---CEEEESSTTSSHHHHHHHHHHH
T ss_pred CCCHHHHCC----HHHHHHHHHHHHHHHHHCCCCCC---EEEEECCCCCCHHHHHHHHHHH
T ss_conf 997888349----59999999999998884388888---1798896998899999999983
No 137
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=80.60 E-value=2.2 Score=19.67 Aligned_cols=36 Identities=19% Similarity=0.315 Sum_probs=22.1
Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHCC-----CCEEEEEECC
Q ss_conf 65025765978999999999998089-----9669998085
Q gi|254781215|r 81 AISAGRGIGKTTLNAWLVLWLMSTRP-----GISVICLANS 116 (511)
Q Consensus 81 aV~sgrG~GKS~l~a~l~lw~l~~~p-----~~kv~vtApt 116 (511)
.+...-|+|||+++..++.-..--.. +.+++..-..
T Consensus 195 vLVGe~GvGKtaiv~~la~ri~~g~vp~~L~~~~i~~l~~~ 235 (854)
T 1qvr_A 195 VLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMG 235 (854)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-
T ss_pred EEECCCCCHHHHHHHHHHHHHHHCCCCHHHCCCCEEEECHH
T ss_conf 58778763067999999999986589957727723663164
No 138
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=80.02 E-value=1.6 Score=20.45 Aligned_cols=35 Identities=14% Similarity=0.183 Sum_probs=26.6
Q ss_pred CEEEEEECCC-CCCHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 0124650257-659789999999999980899669998
Q gi|254781215|r 77 VFKGAISAGR-GIGKTTLNAWLVLWLMSTRPGISVICL 113 (511)
Q Consensus 77 ~~r~aV~sgr-G~GKS~l~a~l~lw~l~~~p~~kv~vt 113 (511)
...++|.|.. |+|||++++.++..++. .+.+|+++
T Consensus 36 ~~ii~v~s~KGGvGKTT~a~nlA~~LA~--~G~rVllI 71 (298)
T 2oze_A 36 AIVILNNYFKGGVGKSKLSTMFAYLTDK--LNLKVLMI 71 (298)
T ss_dssp CEEEEECCSSSSSSHHHHHHHHHHHHHH--TTCCEEEE
T ss_pred EEEEEECCCCCCCCHHHHHHHHHHHHHH--CCCCEEEE
T ss_conf 1999975898981899999999999997--79908999
No 139
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hyperthermostable protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus HB8} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=79.72 E-value=2.4 Score=19.36 Aligned_cols=66 Identities=18% Similarity=0.102 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999874056555421012465025765978999999999998089966999808589999999999999998
Q gi|254781215|r 55 QLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLS 133 (511)
Q Consensus 55 Q~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~~Q~~~ilw~Ei~k~~~ 133 (511)
|-++++++.+.+.++.. ...+..-.|+|||+++|.++-- .+..++|++++..+|.. +..+++.++.
T Consensus 13 qp~aI~~L~~~l~~g~~-------~q~L~GltGS~kt~~iA~~~~~-----~~rp~LVvt~n~~~A~q-L~~el~~~~p 78 (664)
T 1c4o_A 13 QPKAIAGLVEALRDGER-------FVTLLGATGTGKTVTMAKVIEA-----LGRPALVLAPNKILAAQ-LAAEFRELFP 78 (664)
T ss_dssp HHHHHHHHHHHHHTTCS-------EEEEEECTTSCHHHHHHHHHHH-----HTCCEEEEESSHHHHHH-HHHHHHHHCT
T ss_pred CHHHHHHHHHHHHCCCC-------CEEEECCCCCHHHHHHHHHHHH-----HCCCEEEEECCHHHHHH-HHHHHHHHCC
T ss_conf 49999999999966987-------5798787775899999999998-----68998999189999999-9999998668
No 140
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=78.92 E-value=1.4 Score=20.96 Aligned_cols=57 Identities=14% Similarity=0.065 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHCCCCCCCCC-CEEEEEECCC-CCCHHHHHHHHHHHHHHH----CCCCEEEEE
Q ss_conf 99999999874056555421-0124650257-659789999999999980----899669998
Q gi|254781215|r 57 EFMEVVDAHCLNSVNNPNPE-VFKGAISAGR-GIGKTTLNAWLVLWLMST----RPGISVICL 113 (511)
Q Consensus 57 e~l~~i~~~~~~~~~~~~~~-~~r~aV~sgr-G~GKS~l~a~l~lw~l~~----~p~~kv~vt 113 (511)
+-+.+|+.|+.-...++... ..-++|.+.. |+|||+++..++..+++. +.|.+|+++
T Consensus 90 ~~~~~~~~~~~~~~~r~~~~~~~VIav~n~KGGvGKTT~avnLA~~LA~~~~~~~~G~rVLlI 152 (403)
T 3ez9_A 90 QNVIDIYAHRKIPKYRDIHKSPYVIFVVNLKGGVSKTVSTVTLAHALRVHQDLLRHDLRILVI 152 (403)
T ss_dssp HHHHHHHHHTTCCCHHHHSCSCEEEEECCC--------CHHHHHHHHHSCGGGGGGCCCEEEE
T ss_pred HHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCHHHHCCCCEEEE
T ss_conf 999999997079987788999769999681772079999999999998431566589968999
No 141
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=78.82 E-value=1.2 Score=21.25 Aligned_cols=33 Identities=30% Similarity=0.253 Sum_probs=23.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 24650257659789999999999980899669998
Q gi|254781215|r 79 KGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICL 113 (511)
Q Consensus 79 r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vt 113 (511)
|+.+....|+|||+++..++-- +..+...+.+.
T Consensus 2 ki~i~G~~GsGKTTLlk~ia~~--l~~~~g~~~~~ 34 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER--LGKRAIGFWTE 34 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH--HGGGEEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHH--CCCCCCEEEEC
T ss_conf 8999999997099999999974--18787359977
No 142
>1xtq_A GTP-binding protein RHEB; beta saddle, P-loop, signaling protein; HET: GDP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtr_A* 1xts_A*
Probab=78.16 E-value=1.5 Score=20.75 Aligned_cols=25 Identities=32% Similarity=0.335 Sum_probs=20.7
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 4210124650257659789999999
Q gi|254781215|r 74 NPEVFKGAISAGRGIGKTTLNAWLV 98 (511)
Q Consensus 74 ~~~~~r~aV~sgrG~GKS~l~a~l~ 98 (511)
.+..+|++|....|+|||+|+..++
T Consensus 3 ~~~~~KI~viG~~~vGKSsLi~~~~ 27 (177)
T 1xtq_A 3 QSKSRKIAILGYRSVGKSSLTIQFV 27 (177)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 9875699999989909899999997
No 143
>2qh9_A UPF0215 protein AF_1433; structural genomics, PSI-2, MCSG, protein structure initiative, midwest center for structural genomics; 1.80A {Archaeoglobus fulgidus}
Probab=77.88 E-value=2.8 Score=19.02 Aligned_cols=133 Identities=17% Similarity=0.184 Sum_probs=64.5
Q ss_pred EEEEEECCCCCCCCEEEE-EECCCEEEE----EEECCCCCHHHHHHHHHHHHH----HCCCCEEEEEECCCCH----HHH
Q ss_conf 899962333478417999-822755899----873277898899999999998----6188829980068763----688
Q gi|254781215|r 318 LIMGCDIAEEGGDNTVVV-LRRGPVIEH----LFDWSKTDLRTTNNKISGLVE----KYRPDAIIIDANNTGA----RTC 384 (511)
Q Consensus 318 ~viGvDVAr~G~D~svi~-~r~G~~v~~----~~~~~~~d~~~~a~~i~~~~~----~~~~~~i~iD~~GvG~----gV~ 384 (511)
.++|+|.|.+++...+.+ +..+..+.. -.+..|.|.+ ..|..+.. +..++.|++|++|++. ++.
T Consensus 8 Rv~GvD~s~~~~~~~~~gvv~~~~~~dgv~~~~i~vdG~dat---~~i~~l~~~~~~r~~~~vv~ldG~~~a~fn~~di~ 84 (184)
T 2qh9_A 8 RFLGIDDSFDDRKCCVVGCVTCGGYVEGFLYTEIDIDGLDAT---DKLISMVRRSKFREQIKCIFLPGITLGGFNLVDIQ 84 (184)
T ss_dssp EEEEEEEEECSSCEEEEEEEEETTEEEEEEEEEECTTCSCHH---HHHHHHHTTCTTTTTEEEEEESSSEETTTEECCHH
T ss_pred EEEEEEECCCCCCCEEEEEEEECCEEEEEEEEEEEECCCHHH---HHHHHHHHHCCCCCCCCEEEECCEEECCCCEECHH
T ss_conf 899998366789848999999899870289999987884129---99999999714578985999988834158368899
Q ss_pred HHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHH---HHHHHHCCCEEEECCCCEEEEEECHHH
Q ss_conf 98986498279842777766402552279999999999997089998189---999985796799879984999841254
Q gi|254781215|r 385 DYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHSG---LIQNLKSLKSFIVPNTGELAIESKRVK 461 (511)
Q Consensus 385 d~L~~~g~~v~~v~~~~~~~~~~~y~N~rae~~~~~re~l~~g~l~~d~~---l~~el~~~~~~~~~~~gki~ie~Kkkr 461 (511)
..-...|.++++|-.... +-+ .+...++ ..+..+. +...+-. +. . .+.+.+-+
T Consensus 85 ~l~~~~~~PvIgVak~~~--~~~-----------~~e~al~--~~~~~~~~~~i~~~~~~-~~-~---~~~vyv~~---- 140 (184)
T 2qh9_A 85 RVYRETKIPVVVVMRRKP--DME-----------EFDSAMR--NLENYELRRKIVEVAGE-IH-R---IGDIYIQT---- 140 (184)
T ss_dssp HHHHHHCCCEEEEESSCC--CHH-----------HHHHHHT--TSTTHHHHHHHHHHTCC-CE-E---ETTEEEEE----
T ss_pred HHHHHHCCCEEEEEECCC--CCC-----------CCHHHHH--CCCCHHHHHHHHHHCCC-CC-C---CCCEEEEE----
T ss_conf 999886999899997677--873-----------0015666--05507888899986487-66-6---88889995----
Q ss_pred CCCCCCHHHHHHHHHC
Q ss_conf 8999898999999975
Q gi|254781215|r 462 GAKSTDYSDGLMYTFA 477 (511)
Q Consensus 462 g~~SPD~ADAl~l~fa 477 (511)
.|-|++-|-.++..+.
T Consensus 141 ~Gi~l~~A~~lv~~~~ 156 (184)
T 2qh9_A 141 AGLTPSEAEKLVKASL 156 (184)
T ss_dssp ESSCHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHC
T ss_conf 8989999999999974
No 144
>2ck3_A ATP synthase alpha chain heart isoform; ATP phosphorylase, ATP phosphorylase (H+ transporting), F1FO ATP synthase, F1-ATPase, hydrolase, ATP synthesis; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=77.78 E-value=2 Score=19.89 Aligned_cols=29 Identities=17% Similarity=0.112 Sum_probs=23.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 12465025765978999999999998089
Q gi|254781215|r 78 FKGAISAGRGIGKTTLNAWLVLWLMSTRP 106 (511)
Q Consensus 78 ~r~aV~sgrG~GKS~l~a~l~lw~l~~~p 106 (511)
=|+.+-+|.|+|||+++..++......+.
T Consensus 163 qr~~i~g~~g~GKt~l~~~~i~~~~~~~~ 191 (510)
T 2ck3_A 163 QRELIIGDRQTGKTSIAIDTIINQKRFND 191 (510)
T ss_dssp CBCEEEESTTSSHHHHHHHHHHHTHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 73445678999989999999999998525
No 145
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP; HET: ADP; 1.70A {Leishmania major strain friedlin} SCOP: c.37.1.1
Probab=77.71 E-value=1.6 Score=20.58 Aligned_cols=29 Identities=21% Similarity=0.258 Sum_probs=23.8
Q ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 55421012465025765978999999999
Q gi|254781215|r 72 NPNPEVFKGAISAGRGIGKTTLNAWLVLW 100 (511)
Q Consensus 72 ~~~~~~~r~aV~sgrG~GKS~l~a~l~lw 100 (511)
+..|....+.+.+.-|+|||+++..|+-.
T Consensus 5 ~~~~kg~~Ivi~G~~GsGKTTiak~La~~ 33 (184)
T 1y63_A 5 MEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp -CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 68999976999879999889999999998
No 146
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=77.57 E-value=1.4 Score=20.82 Aligned_cols=32 Identities=25% Similarity=0.310 Sum_probs=22.2
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 01246502576597899999999999808996699980
Q gi|254781215|r 77 VFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLA 114 (511)
Q Consensus 77 ~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtA 114 (511)
|.-+.|.++.|+|||+++..+. ..+..++.+.
T Consensus 1 MkiI~l~G~~GSGKsTva~~L~------~~g~~~i~~~ 32 (179)
T 3lw7_A 1 IKVILITGMPGSGKSEFAKLLK------ERGAKVIVMS 32 (179)
T ss_dssp -CEEEEECCTTSCHHHHHHHHH------HTTCEEEEHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH------HCCCEEEECC
T ss_conf 9799998999988999999999------8799299883
No 147
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=77.43 E-value=1.5 Score=20.68 Aligned_cols=27 Identities=33% Similarity=0.252 Sum_probs=22.1
Q ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 554210124650257659789999999
Q gi|254781215|r 72 NPNPEVFKGAISAGRGIGKTTLNAWLV 98 (511)
Q Consensus 72 ~~~~~~~r~aV~sgrG~GKS~l~a~l~ 98 (511)
++.+...|++|....|+|||+|+..++
T Consensus 19 ~p~~~~~KI~vvG~~~vGKTsLi~r~~ 45 (201)
T 3oes_A 19 MPLVRYRKVVILGYRCVGKTSLAHQFV 45 (201)
T ss_dssp ----CEEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 987772189999979988999999997
No 148
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=77.30 E-value=1.7 Score=20.40 Aligned_cols=24 Identities=33% Similarity=0.437 Sum_probs=20.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 124650257659789999999999
Q gi|254781215|r 78 FKGAISAGRGIGKTTLNAWLVLWL 101 (511)
Q Consensus 78 ~r~aV~sgrG~GKS~l~a~l~lw~ 101 (511)
+-++|..|-|+|||+++..|.--+
T Consensus 23 ~IIgItG~~gSGKSTla~~L~~~l 46 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 899988989885999999999996
No 149
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 3.00A {Aquifex aeolicus VF5}
Probab=77.28 E-value=1.3 Score=21.05 Aligned_cols=30 Identities=20% Similarity=0.273 Sum_probs=22.6
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 012465025765978999999999998089966999
Q gi|254781215|r 77 VFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVIC 112 (511)
Q Consensus 77 ~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~v 112 (511)
|.+++|.+|=|+|||+++..+. ..|..++.
T Consensus 1 M~kIgItG~iGSGKSTv~~~l~------~~G~~vid 30 (204)
T 2if2_A 1 MKRIGLTGNIGCGKSTVAQMFR------ELGAYVLD 30 (204)
T ss_dssp CCEEEEEECTTSSHHHHHHHHH------HTTCEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHH------HCCCEEEE
T ss_conf 9499997999777999999999------87993998
No 150
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 1ryf_A* 1ryh_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C 1ds6_A* 2qme_A* 2ov2_A* ...
Probab=77.24 E-value=1.6 Score=20.52 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=20.3
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 210124650257659789999999
Q gi|254781215|r 75 PEVFKGAISAGRGIGKTTLNAWLV 98 (511)
Q Consensus 75 ~~~~r~aV~sgrG~GKS~l~a~l~ 98 (511)
|..+|+.|....|+|||++...++
T Consensus 3 p~~iKvvivG~~~vGKTsli~~~~ 26 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYT 26 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEEEEECCCCCCHHHHHHHHH
T ss_conf 607999999989969999999997
No 151
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=75.98 E-value=2.2 Score=19.63 Aligned_cols=28 Identities=14% Similarity=0.113 Sum_probs=22.8
Q ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 5542101246502576597899999999
Q gi|254781215|r 72 NPNPEVFKGAISAGRGIGKTTLNAWLVL 99 (511)
Q Consensus 72 ~~~~~~~r~aV~sgrG~GKS~l~a~l~l 99 (511)
+..+..+|+.|....|+|||.|+..++-
T Consensus 4 ms~~~~iKI~viG~~~vGKTsLi~r~~~ 31 (212)
T 2j0v_A 4 MSVSKFIKCVTVGDGAVGKTCMLICYTS 31 (212)
T ss_dssp CSCCCEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCEEEEEEECCCCCCHHHHHHHHHH
T ss_conf 9868668999999799788999999972
No 152
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, cytoplasm, nucleotide- binding, hydrolase; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=75.93 E-value=2.8 Score=19.00 Aligned_cols=65 Identities=17% Similarity=0.039 Sum_probs=34.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCC----CCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 5557845899999999999874056----5554210124650257659789999999999980899669998085
Q gi|254781215|r 46 EGFSAPRSWQLEFMEVVDAHCLNSV----NNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANS 116 (511)
Q Consensus 46 ~~~~~P~~WQ~e~l~~i~~~~~~~~----~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtApt 116 (511)
..+-|-+. +++.|+++-+...++. ....+...-+-+.++.|+|||.++..++-. -+..++.+.++
T Consensus 17 ~di~G~~~-~k~~l~e~i~~~l~~~~~~~~~g~~~p~giLL~GppGtGKT~la~~iA~~-----~~~~~~~i~~s 85 (285)
T 3h4m_A 17 EDIGGLEK-QMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATE-----TNATFIRVVGS 85 (285)
T ss_dssp GGSCSCHH-HHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHH-----TTCEEEEEEGG
T ss_pred HHHCCHHH-HHHHHHHHHHHHHCCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHH-----CCCCEEEEEHH
T ss_conf 88426999-99999999999850999998679998865788798999877999999998-----09986898889
No 153
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=75.70 E-value=3.2 Score=18.64 Aligned_cols=47 Identities=11% Similarity=-0.156 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHCCCC-C--CCCCCEEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 99999999998740565-5--54210124650257659789999999999
Q gi|254781215|r 55 QLEFMEVVDAHCLNSVN-N--PNPEVFKGAISAGRGIGKTTLNAWLVLWL 101 (511)
Q Consensus 55 Q~e~l~~i~~~~~~~~~-~--~~~~~~r~aV~sgrG~GKS~l~a~l~lw~ 101 (511)
|++.|+++-+...+... . ..+....+-+..+.|+|||.++..++-..
T Consensus 14 ~k~~l~~~v~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~la~aia~~~ 63 (262)
T 2qz4_A 14 AKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp HHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999999869999997599999726886899898647999997335
No 154
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=75.54 E-value=1.8 Score=20.15 Aligned_cols=21 Identities=29% Similarity=0.542 Sum_probs=18.6
Q ss_pred EEEEEECCCCCCHHHHHHHHH
Q ss_conf 124650257659789999999
Q gi|254781215|r 78 FKGAISAGRGIGKTTLNAWLV 98 (511)
Q Consensus 78 ~r~aV~sgrG~GKS~l~a~l~ 98 (511)
+|++|...+++|||++...++
T Consensus 4 ~KI~v~G~~~vGKTsLi~~~~ 24 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFV 24 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
T ss_conf 199999999989999999996
No 155
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori 26695} PDB: 1zui_A* 3hr7_A
Probab=75.49 E-value=1.7 Score=20.31 Aligned_cols=29 Identities=24% Similarity=0.131 Sum_probs=23.2
Q ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 54210124650257659789999999999
Q gi|254781215|r 73 PNPEVFKGAISAGRGIGKTTLNAWLVLWL 101 (511)
Q Consensus 73 ~~~~~~r~aV~sgrG~GKS~l~a~l~lw~ 101 (511)
|...|-++.+....|+|||+++..++--+
T Consensus 3 ~~~~Mk~IiliG~~GsGKSTvak~La~~l 31 (168)
T 1zuh_A 3 HHHHMQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp -----CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 43366759998999998999999999996
No 156
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=75.44 E-value=3.2 Score=18.60 Aligned_cols=25 Identities=40% Similarity=0.320 Sum_probs=16.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHH
Q ss_conf 4650257659789999999999980
Q gi|254781215|r 80 GAISAGRGIGKTTLNAWLVLWLMST 104 (511)
Q Consensus 80 ~aV~sgrG~GKS~l~a~l~lw~l~~ 104 (511)
.-|.+|=|+|||+..+..+++.++.
T Consensus 19 ~LV~AsAGSGKT~~L~~r~lrlll~ 43 (1180)
T 1w36_B 19 RLIEASAGTGKTFTIAALYLRLLLG 43 (1180)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHC
T ss_conf 7999937303889999999999850
No 157
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=74.96 E-value=1.7 Score=20.38 Aligned_cols=25 Identities=28% Similarity=0.315 Sum_probs=20.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 1246502576597899999999999
Q gi|254781215|r 78 FKGAISAGRGIGKTTLNAWLVLWLM 102 (511)
Q Consensus 78 ~r~aV~sgrG~GKS~l~a~l~lw~l 102 (511)
+-+++.+|-|+|||+++..|.--+-
T Consensus 26 ~IIgI~G~~gSGKSTla~~L~~~l~ 50 (245)
T 2jeo_A 26 FLIGVSGGTASGKSTVCEKIMELLG 50 (245)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 8999889898889999999999856
No 158
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural genomics, PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=74.66 E-value=3.4 Score=18.47 Aligned_cols=40 Identities=20% Similarity=0.028 Sum_probs=30.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHH
Q ss_conf 124650257659789999999999980899669998085899
Q gi|254781215|r 78 FKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQ 119 (511)
Q Consensus 78 ~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~~Q 119 (511)
.=+.|..-.|+|||+|+.-|+-.+.- .|-+|.++..+-..
T Consensus 5 ki~~I~G~~gSGKTTLi~~Li~~L~~--~G~~V~~iKh~~h~ 44 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVR--EGWRVGTVKHHGHG 44 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEEECCC--
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHH--CCCEEEEEECCCCC
T ss_conf 59999819999899999999999997--69905677425766
No 159
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=74.55 E-value=3.4 Score=18.46 Aligned_cols=92 Identities=13% Similarity=0.130 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCC----CCCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 6665288667764214557775655578458999999999998740565554----210124650257659789999999
Q gi|254781215|r 23 EIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPN----PEVFKGAISAGRGIGKTTLNAWLV 98 (511)
Q Consensus 23 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~P~~WQ~e~l~~i~~~~~~~~~~~~----~~~~r~aV~sgrG~GKS~l~a~l~ 98 (511)
.+.+.+..-++-..- +.......-|.++=.+++++.-.....+..... ....-+.+....|+|||+.++=++
T Consensus 44 ~~~~~li~~ik~~~~----~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~~~~p~vi~lvG~~G~GKTTt~aKLA 119 (297)
T 1j8m_F 44 KLVFSLTNKIKERLK----NEKPPTYIERREWFIKIVYDELSNLFGGDKEPKVIPDKIPYVIMLVGVQGTGKTTTAGKLA 119 (297)
T ss_dssp HHHHHHHHHHHHHHH----HCCCCTTCCHHHHHHHHHHHHHHHHTTCSCCCCCSCSSSSEEEEEECSSCSSTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHH----CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHH
T ss_conf 999999999999960----5776664477999999999999987355532232357898799974676666203799999
Q ss_pred HHHHHHCCCCEEEEEECCHHH
Q ss_conf 999980899669998085899
Q gi|254781215|r 99 LWLMSTRPGISVICLANSETQ 119 (511)
Q Consensus 99 lw~l~~~p~~kv~vtApt~~Q 119 (511)
.|+.- ......++++-|++.
T Consensus 120 ~~~~~-~g~kv~l~a~Dt~R~ 139 (297)
T 1j8m_F 120 YFYKK-KGFKVGLVGADVYRP 139 (297)
T ss_dssp HHHHH-TTCCEEEEECCCSSS
T ss_pred HHHHH-CCCCCCEEECCCCCH
T ss_conf 99996-797641121156544
No 160
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single particle analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=74.53 E-value=2.8 Score=19.01 Aligned_cols=25 Identities=24% Similarity=0.154 Sum_probs=20.9
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 0124650257659789999999999
Q gi|254781215|r 77 VFKGAISAGRGIGKTTLNAWLVLWL 101 (511)
Q Consensus 77 ~~r~aV~sgrG~GKS~l~a~l~lw~ 101 (511)
.-|+.+-+|+|+|||+++..++++.
T Consensus 162 Gqr~~I~g~~g~GKt~l~~~~~~~~ 186 (502)
T 2qe7_A 162 GQRELIIGDRQTGKTTIAIDTIINQ 186 (502)
T ss_dssp TCBCEEEECSSSCHHHHHHHHHHGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 8677755688887779999999842
No 161
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, helix-turn-helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=74.46 E-value=3.4 Score=18.44 Aligned_cols=48 Identities=13% Similarity=0.101 Sum_probs=27.6
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 45899999999999874056555421012465025765978999999999
Q gi|254781215|r 51 PRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLW 100 (511)
Q Consensus 51 P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw 100 (511)
...-+..+...+..-.........|. .+-+.++-|+|||+++..++--
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~P~--~ill~GpPGsGKTtlak~la~~ 55 (253)
T 2p5t_B 8 DSEFKHALARNLRSLTRGKKSSKQPI--AILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCSSCE--EEEEESCGGGTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCE--EEEEECCCCCCHHHHHHHHHHH
T ss_conf 99999999999999982632567987--9998899998889999999998
No 162
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=74.44 E-value=3.4 Score=18.44 Aligned_cols=23 Identities=22% Similarity=0.072 Sum_probs=18.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 12465025765978999999999
Q gi|254781215|r 78 FKGAISAGRGIGKTTLNAWLVLW 100 (511)
Q Consensus 78 ~r~aV~sgrG~GKS~l~a~l~lw 100 (511)
.-+-+....|+|||+++..++--
T Consensus 65 ~~vLL~GppGtGKT~la~~iA~~ 87 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
T ss_conf 36998897999899999999999
No 163
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=74.19 E-value=2.1 Score=19.80 Aligned_cols=22 Identities=36% Similarity=0.469 Sum_probs=19.5
Q ss_pred CEEEEEECCCCCCHHHHHHHHH
Q ss_conf 0124650257659789999999
Q gi|254781215|r 77 VFKGAISAGRGIGKTTLNAWLV 98 (511)
Q Consensus 77 ~~r~aV~sgrG~GKS~l~a~l~ 98 (511)
++|+.|....|+|||+|...++
T Consensus 8 ~~Ki~lvG~~~vGKSsli~rl~ 29 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYV 29 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
T ss_conf 1599999979929999999996
No 164
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus dsm 4304} PDB: 2oaq_1
Probab=74.16 E-value=3.5 Score=18.40 Aligned_cols=15 Identities=7% Similarity=-0.071 Sum_probs=5.4
Q ss_pred CCCHHHHHHHHHHHC
Q ss_conf 299788988888850
Q gi|254781215|r 202 GTPDVINLGILGFLT 216 (511)
Q Consensus 202 gI~d~i~e~i~~~Lt 216 (511)
.+++.+..-+.-++.
T Consensus 244 ~~~~~~~~~l~~~v~ 258 (511)
T 2oap_1 244 TVPSGVLAYLWLAIE 258 (511)
T ss_dssp SSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
T ss_conf 982999999999986
No 165
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 3nxs_A*
Probab=74.12 E-value=3.5 Score=18.39 Aligned_cols=42 Identities=24% Similarity=0.320 Sum_probs=30.5
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHH
Q ss_conf 012465025765978999999999998089966999808589
Q gi|254781215|r 77 VFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSET 118 (511)
Q Consensus 77 ~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~~ 118 (511)
..|++|...=|+|||+|+..|+.++....+..-++.+=|+..
T Consensus 79 ~~rIgItG~PGaGKSTLi~~L~~~~~~~g~~VavlavDPss~ 120 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSST 120 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 759974289999899999999999986488656884688874
No 166
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=73.90 E-value=2.1 Score=19.74 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=19.6
Q ss_pred CCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 10124650257659789999999
Q gi|254781215|r 76 EVFKGAISAGRGIGKTTLNAWLV 98 (511)
Q Consensus 76 ~~~r~aV~sgrG~GKS~l~a~l~ 98 (511)
.++|+.|....|+|||+++-.++
T Consensus 2 ~~~KIvvlG~~~vGKTSli~~~~ 24 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFV 24 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEEEECCCCCCHHHHHHHHH
T ss_conf 08999999999968899999998
No 167
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=73.81 E-value=2.2 Score=19.59 Aligned_cols=25 Identities=28% Similarity=0.473 Sum_probs=20.8
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 4210124650257659789999999
Q gi|254781215|r 74 NPEVFKGAISAGRGIGKTTLNAWLV 98 (511)
Q Consensus 74 ~~~~~r~aV~sgrG~GKS~l~a~l~ 98 (511)
.+..+|++|....++|||.++..++
T Consensus 4 ~~~l~KI~v~G~~~vGKTsli~~~~ 28 (177)
T 1wms_A 4 KSSLFKVILLGDGGVGKSSLMNRYV 28 (177)
T ss_dssp CEEEEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCEEEEEEECCCCCCHHHHHHHHH
T ss_conf 9846699999989989999999998
No 168
>2ck3_D ATP synthase beta chain; ATP phosphorylase, ATP phosphorylase (H+ transporting), F1FO ATP synthase, F1-ATPase, hydrolase, ATP synthesis; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_E* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=73.68 E-value=3 Score=18.82 Aligned_cols=24 Identities=33% Similarity=0.223 Sum_probs=20.3
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 012465025765978999999999
Q gi|254781215|r 77 VFKGAISAGRGIGKTTLNAWLVLW 100 (511)
Q Consensus 77 ~~r~aV~sgrG~GKS~l~a~l~lw 100 (511)
.=|+.+-+|.|+|||.++..++.-
T Consensus 153 Gqr~~Ifg~~G~GKt~l~~~~~~n 176 (482)
T 2ck3_D 153 GGKIGLFGGAGVGKTVLIMELINN 176 (482)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 787677668999889999999986
No 169
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus P2} PDB: 1qzx_A 1qzw_A
Probab=73.47 E-value=3.6 Score=18.29 Aligned_cols=93 Identities=13% Similarity=0.099 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC----CCCCCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 66652886677642145577756555784589999999999987405655----54210124650257659789999999
Q gi|254781215|r 23 EIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNN----PNPEVFKGAISAGRGIGKTTLNAWLV 98 (511)
Q Consensus 23 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~P~~WQ~e~l~~i~~~~~~~~~~----~~~~~~r~aV~sgrG~GKS~l~a~l~ 98 (511)
++...++.-++-..- +........|.++=.+++++.-.....+... ......-+.+....|+|||+.+|=++
T Consensus 43 ~vv~~li~~Ik~~~~----~~~~~~~~~~~~~i~~iv~~eL~~llg~~~~~~~~~~~~p~Vi~lvG~~G~GKTTTiaKLA 118 (433)
T 3kl4_A 43 KLVFSLTAKIKERLN----KEKPPSVLERKEWFISIVYDELSKLFGGDKEPNVNPTKLPFIIMLVGVQGSGKTTTAGKLA 118 (433)
T ss_dssp HHHHHHHHHHHHHHH----HSCCCTTCCHHHHHHHHHHHHHHHHHCSSSCCCCSCCSSSEEEEECCCTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH----CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHH
T ss_conf 999999999999981----2667777998999999999999998487666443457898799997478887013499999
Q ss_pred HHHHHHCCCCEEEEEECCHHHH
Q ss_conf 9999808996699980858999
Q gi|254781215|r 99 LWLMSTRPGISVICLANSETQL 120 (511)
Q Consensus 99 lw~l~~~p~~kv~vtApt~~Q~ 120 (511)
.|+. .+-....++++-|++-+
T Consensus 119 ~~~~-~~g~kV~lva~DtyR~a 139 (433)
T 3kl4_A 119 YFYK-KRGYKVGLVAADVYRPA 139 (433)
T ss_dssp HHHH-HTTCCEEEEEECCSCHH
T ss_pred HHHH-HCCCEEEEEECCCCCCC
T ss_conf 9998-65981589844775667
No 170
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=73.43 E-value=3.6 Score=18.28 Aligned_cols=35 Identities=14% Similarity=0.132 Sum_probs=25.2
Q ss_pred EEEEEC-CCCCCHHHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 246502-5765978999999999998089966999808
Q gi|254781215|r 79 KGAISA-GRGIGKTTLNAWLVLWLMSTRPGISVICLAN 115 (511)
Q Consensus 79 r~aV~s-grG~GKS~l~a~l~lw~l~~~p~~kv~vtAp 115 (511)
|+-|.+ |.|+|||++++.++.-+.- .+.+|.+.=|
T Consensus 3 ~~~Itgt~~GVGKTtvs~~La~~La~--~G~rV~~~d~ 38 (224)
T 1byi_A 3 RYFVTGTDTEVGKTVASCALLQAAKA--AGYRTAGYKP 38 (224)
T ss_dssp EEEEEESSTTSCHHHHHHHHHHHHHH--TTCCEEEECS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH--CCCCEEEECC
T ss_conf 29999899997599999999999997--7994999886
No 171
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=73.40 E-value=3.6 Score=18.28 Aligned_cols=52 Identities=19% Similarity=0.091 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 9999999987405655542101246502576597899999999999808996699
Q gi|254781215|r 57 EFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVI 111 (511)
Q Consensus 57 e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~ 111 (511)
+.|..+........... | +-++|.+|-|+|||+++..+.--+-.......++
T Consensus 5 ~~~~~~~~~~~~~~~~~-~--~iIgI~G~~GSGKSTla~~L~~~l~~~~~~~~~~ 56 (201)
T 1rz3_A 5 DRIDFLCKTILAIKTAG-R--LVLGIDGLSRSGKTTLANQLSQTLREQGISVCVF 56 (201)
T ss_dssp HHHHHHHHHHHTSCCSS-S--EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHHHCCCCC-C--EEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEE
T ss_conf 99999999997056799-8--8999889898899999999999835247760220
No 172
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=73.27 E-value=2.6 Score=19.21 Aligned_cols=21 Identities=24% Similarity=0.064 Sum_probs=18.1
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q ss_conf 465025765978999999999
Q gi|254781215|r 80 GAISAGRGIGKTTLNAWLVLW 100 (511)
Q Consensus 80 ~aV~sgrG~GKS~l~a~l~lw 100 (511)
+.+.++-|+|||+++..|.--
T Consensus 14 I~ItG~~GSGKsTva~~L~e~ 34 (202)
T 3ch4_B 14 LLFSGKRKSGKDFVTEALQSR 34 (202)
T ss_dssp EEEEECTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 998897999999999999997
No 173
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolase/protein binding complex; 2.40A {Helicobacter pylori 26695} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=73.04 E-value=3.7 Score=18.23 Aligned_cols=28 Identities=25% Similarity=0.470 Sum_probs=17.2
Q ss_pred HHHHHCCCCEEEEEECCCCHHHHHHHHHC
Q ss_conf 99986188829980068763688989864
Q gi|254781215|r 362 GLVEKYRPDAIIIDANNTGARTCDYLEML 390 (511)
Q Consensus 362 ~~~~~~~~~~i~iD~~GvG~gV~d~L~~~ 390 (511)
..+-+.+|+.|++...- |.-..+.++..
T Consensus 234 ~~~LR~~pd~iivgEiR-~~Ea~~~l~a~ 261 (330)
T 2pt7_A 234 KSCLRMRPDRIILGELR-SSEAYDFYNVL 261 (330)
T ss_dssp HHHTTSCCSEEEECCCC-STHHHHHHHHH
T ss_pred HHHHCCCCCCEEECCCC-CHHHHHHHHHH
T ss_conf 99746499843516668-68999999999
No 174
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=72.80 E-value=2.9 Score=18.91 Aligned_cols=26 Identities=15% Similarity=0.295 Sum_probs=21.3
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 42101246502576597899999999
Q gi|254781215|r 74 NPEVFKGAISAGRGIGKTTLNAWLVL 99 (511)
Q Consensus 74 ~~~~~r~aV~sgrG~GKS~l~a~l~l 99 (511)
....+|+.|....|+|||+|+..++-
T Consensus 4 ~~~~~KI~vvG~~~vGKTsLi~r~~~ 29 (208)
T 3clv_A 4 KKSSYKTVLLGESSVGKSSIVLRLTK 29 (208)
T ss_dssp CCSSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEEEECCCCCCHHHHHHHHHC
T ss_conf 58716999999999488999999971
No 175
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=72.60 E-value=2.4 Score=19.45 Aligned_cols=23 Identities=26% Similarity=0.330 Sum_probs=19.6
Q ss_pred CCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 10124650257659789999999
Q gi|254781215|r 76 EVFKGAISAGRGIGKTTLNAWLV 98 (511)
Q Consensus 76 ~~~r~aV~sgrG~GKS~l~a~l~ 98 (511)
.++|+.|....|+|||++...++
T Consensus 9 ~~~KI~v~G~~~vGKTsli~~l~ 31 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFI 31 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEEEECCCCCCHHHHHHHHH
T ss_conf 67899999989949999999998
No 176
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=72.42 E-value=2.4 Score=19.35 Aligned_cols=23 Identities=26% Similarity=0.458 Sum_probs=19.4
Q ss_pred CCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 10124650257659789999999
Q gi|254781215|r 76 EVFKGAISAGRGIGKTTLNAWLV 98 (511)
Q Consensus 76 ~~~r~aV~sgrG~GKS~l~a~l~ 98 (511)
.++|+.|....|+|||+++..++
T Consensus 4 ~~~Ki~vlG~~~vGKTsli~~~~ 26 (199)
T 2f9l_A 4 YLFKVVLIGDSGVGKSNLLSRFT 26 (199)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHH
T ss_pred EEEEEEEECCCCCCHHHHHHHHH
T ss_conf 03599999999959899999998
No 177
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Probab=72.33 E-value=2 Score=19.95 Aligned_cols=38 Identities=18% Similarity=0.219 Sum_probs=27.3
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 2101246502576597899999999999808996699980
Q gi|254781215|r 75 PEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLA 114 (511)
Q Consensus 75 ~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtA 114 (511)
-...|+++-+..|+|||+++..+.-.+ ...+..++++.
T Consensus 10 ~~~lrI~iEG~~GsGKTT~~~~L~e~l--~~~~~~v~~~~ 47 (341)
T 1osn_A 10 MGVLRIYLDGAYGIGKTTAAEEFLHHF--AITPNRILLIG 47 (341)
T ss_dssp EEEEEEEEEESSSSCTTHHHHHHHHTT--TTSGGGEEEEC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH--HHCCCCEEEEE
T ss_conf 376599998886788999999999987--11698669971
No 178
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=72.23 E-value=2.5 Score=19.30 Aligned_cols=24 Identities=25% Similarity=0.397 Sum_probs=20.1
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 210124650257659789999999
Q gi|254781215|r 75 PEVFKGAISAGRGIGKTTLNAWLV 98 (511)
Q Consensus 75 ~~~~r~aV~sgrG~GKS~l~a~l~ 98 (511)
-.++|+.|....|+|||+++..++
T Consensus 18 d~~~Ki~vvG~~~vGKTSLi~~~~ 41 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFV 41 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEEEEECCCCCCHHHHHHHHH
T ss_conf 737799999999978999999997
No 179
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=72.18 E-value=2.6 Score=19.15 Aligned_cols=31 Identities=23% Similarity=0.124 Sum_probs=25.2
Q ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 5554210124650257659789999999999
Q gi|254781215|r 71 NNPNPEVFKGAISAGRGIGKTTLNAWLVLWL 101 (511)
Q Consensus 71 ~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~ 101 (511)
..+.+...|+.+..+-|+|||+++..|+-.+
T Consensus 14 ~~p~~~~m~I~i~G~pGsGKsT~a~~Lak~l 44 (201)
T 2cdn_A 14 LVPRGSHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp --CCCSCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 8999997479998999999899999999997
No 180
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=71.96 E-value=2.5 Score=19.26 Aligned_cols=25 Identities=32% Similarity=0.387 Sum_probs=20.9
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 2101246502576597899999999
Q gi|254781215|r 75 PEVFKGAISAGRGIGKTTLNAWLVL 99 (511)
Q Consensus 75 ~~~~r~aV~sgrG~GKS~l~a~l~l 99 (511)
-.++|+.|....|+|||+|+..++-
T Consensus 23 d~~fKIviiG~~~vGKSSLi~~l~~ 47 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTR 47 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHH
T ss_pred CEEEEEEEECCCCCCHHHHHHHHHH
T ss_conf 7788999999999589999999971
No 181
>2p67_A LAO/AO transport system kinase; ARGK, structural genomics, PSI-2, protein structure initiative; 1.80A {Escherichia coli K12} SCOP: c.37.1.10
Probab=71.68 E-value=4 Score=18.03 Aligned_cols=43 Identities=19% Similarity=0.274 Sum_probs=32.0
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHH
Q ss_conf 0124650257659789999999999980899669998085899
Q gi|254781215|r 77 VFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQ 119 (511)
Q Consensus 77 ~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~~Q 119 (511)
..++.|...=|.|||+|+..++-++..-....-|+..-|+..-
T Consensus 56 ~~~IgItG~PGaGKSTLi~~L~~~~~~~~~~vavlavDpss~~ 98 (341)
T 2p67_A 56 TLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPV 98 (341)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCC
T ss_conf 5289732899998999999999998616886014416886640
No 182
>2j28_9 Signal recognition particle 54; ribosome, protein/RNA complex; 8.0A {Escherichia coli}
Probab=71.48 E-value=4 Score=18.00 Aligned_cols=94 Identities=24% Similarity=0.232 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC---------CCCCCEEEEEECCCCCCHHHH
Q ss_conf 66652886677642145577756555784589999999999987405655---------542101246502576597899
Q gi|254781215|r 23 EIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNN---------PNPEVFKGAISAGRGIGKTTL 93 (511)
Q Consensus 23 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~P~~WQ~e~l~~i~~~~~~~~~~---------~~~~~~r~aV~sgrG~GKS~l 93 (511)
.+..++.+-++--.. +..+.....| +.++++.+.+.+.+..+. ..| .-+.+..-.|+|||+.
T Consensus 45 ~vv~~ii~~ik~~~~----~~~~~~~~~~---~~~i~k~v~~eL~~~l~~~~~~l~~~~~~p--~VIm~VGvnGsGKTTT 115 (430)
T 2j28_9 45 PVVREFINRVKEKAV----GHEVNKSLTP---GQEFVKIVRNELVAAMGEENQTLNLAAQPP--AVVLMAGLQGAGKTTS 115 (430)
T ss_dssp HHHHHHHHHHHHHHT----TCCCCSSSCH---HHHHHHHHHHHHHHHTTCSCCCCCSCSSSS--CEEEEECSSSSSSTTT
T ss_pred HHHHHHHHHHHHHHH----HCCCCCCCCH---HHHHHHHHHHHHHHHHCCCCCCCCCCCCCC--EEEEEECCCCCCCCCH
T ss_conf 999999999999983----1746766882---999999999999986476654344278998--5999975689985542
Q ss_pred HHHHHHHHHHHCCCCEEE-EEECCH-----HHHHHHHHHHH
Q ss_conf 999999999808996699-980858-----99999999999
Q gi|254781215|r 94 NAWLVLWLMSTRPGISVI-CLANSE-----TQLKTTLWAEV 128 (511)
Q Consensus 94 ~a~l~lw~l~~~p~~kv~-vtApt~-----~Q~~~ilw~Ei 128 (511)
+|=++.|+...+ +.+|+ +++-|+ +|++. |++.
T Consensus 116 iaKLA~~~k~k~-~kkVllva~DTfR~AA~eQLk~--~a~~ 153 (430)
T 2j28_9 116 VGKLGKFLREKH-KKKVLVVSADVYRPAAIKQLET--LAEQ 153 (430)
T ss_dssp HHHHHHHHHTSS-SCCCCBCCCCCSSSCSHHHHHH--HHHH
T ss_pred HHHHHHHHHHHC-CCEEEEEECCCCCCCHHHHHHH--HHHH
T ss_conf 999999999947-9858999557555158999999--9860
No 183
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=71.42 E-value=2 Score=19.87 Aligned_cols=27 Identities=11% Similarity=-0.027 Sum_probs=21.9
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 012465025765978999999999998
Q gi|254781215|r 77 VFKGAISAGRGIGKTTLNAWLVLWLMS 103 (511)
Q Consensus 77 ~~r~aV~sgrG~GKS~l~a~l~lw~l~ 103 (511)
.-|+.+-+|.|+|||++++.++.+...
T Consensus 152 GQr~~Ifg~~G~GKt~Ll~~i~~~~~~ 178 (469)
T 2c61_A 152 GQKLPIFSASGLPHNEIALQIARQASV 178 (469)
T ss_dssp TCBCCEEECTTSCHHHHHHHHHHHCBC
T ss_pred CCEEEECCCCCCCCCHHHHHHHHHHHH
T ss_conf 735552158889965789999999985
No 184
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=71.17 E-value=2.7 Score=19.08 Aligned_cols=21 Identities=19% Similarity=0.308 Sum_probs=18.9
Q ss_pred EEEEEECCCCCCHHHHHHHHH
Q ss_conf 124650257659789999999
Q gi|254781215|r 78 FKGAISAGRGIGKTTLNAWLV 98 (511)
Q Consensus 78 ~r~aV~sgrG~GKS~l~a~l~ 98 (511)
.|+.|....|+|||+++..++
T Consensus 4 iKv~ilG~~~vGKSsLi~~l~ 24 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFV 24 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
T ss_conf 999999999909899999996
No 185
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, P partition, DNA binding protein; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=71.07 E-value=4.1 Score=17.94 Aligned_cols=59 Identities=12% Similarity=0.067 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHCCCCCCCCC-CEEEEEECCC-CCCHHHHHHHHHHHHHHH----CCCCEEEEEE
Q ss_conf 999999999874056555421-0124650257-659789999999999980----8996699980
Q gi|254781215|r 56 LEFMEVVDAHCLNSVNNPNPE-VFKGAISAGR-GIGKTTLNAWLVLWLMST----RPGISVICLA 114 (511)
Q Consensus 56 ~e~l~~i~~~~~~~~~~~~~~-~~r~aV~sgr-G~GKS~l~a~l~lw~l~~----~p~~kv~vtA 114 (511)
.+-+.+|+.|......+.... ..-++|.+.. |+|||+++..++..+... ..+.+|+++=
T Consensus 86 l~~i~~~~~~~~~~~~r~~~~~~~vIav~n~KGGvGKTTttv~LA~~La~~~~la~~g~RVLlID 150 (398)
T 3ez2_A 86 IQNIIDIYEHRGVPKYRDRYSEAYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVID 150 (398)
T ss_dssp HHHHHHHHHHTTCCCGGGTCCSCEEEEECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEEE
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 99999999972689877789987699997888987489999999999997206664699559858
No 186
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell membrane, GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens}
Probab=70.90 E-value=2.7 Score=19.07 Aligned_cols=23 Identities=26% Similarity=0.276 Sum_probs=19.7
Q ss_pred CCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 10124650257659789999999
Q gi|254781215|r 76 EVFKGAISAGRGIGKTTLNAWLV 98 (511)
Q Consensus 76 ~~~r~aV~sgrG~GKS~l~a~l~ 98 (511)
.++|+.|....|+|||+|+..++
T Consensus 22 ~~fKI~viG~~~vGKTsLi~rl~ 44 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYA 44 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEEEECCCCCCHHHHHHHHH
T ss_conf 46699999999928899999997
No 187
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ ATPase, DNA polymerase; HET: ATG ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=70.76 E-value=4.2 Score=17.90 Aligned_cols=64 Identities=16% Similarity=0.087 Sum_probs=35.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHC----------CCCC-CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 775655578458999999999998740----------5655-54210124650257659789999999999980899669
Q gi|254781215|r 42 GTPLEGFSAPRSWQLEFMEVVDAHCLN----------SVNN-PNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISV 110 (511)
Q Consensus 42 ~~~~~~~~~P~~WQ~e~l~~i~~~~~~----------~~~~-~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv 110 (511)
++.+..+.| |.+..+.+..++.+ ..+. ..+...-+-+.++-|+|||+++-.++-- -+..+
T Consensus 35 P~sl~dliG----n~~~i~~L~~wL~~w~~~~~~~~~~~~~~~~~~~~~lLL~GPpG~GKTTla~~lAke-----lg~~v 105 (516)
T 1sxj_A 35 PTNLQQVCG----NKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQE-----LGYDI 105 (516)
T ss_dssp CSSGGGCCS----CHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHH-----TTCEE
T ss_pred CCCHHHHCC----CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHH-----HCCCE
T ss_conf 998999539----799999999999850320222221001245888877999899970399999999998-----19998
Q ss_pred EEEE
Q ss_conf 9980
Q gi|254781215|r 111 ICLA 114 (511)
Q Consensus 111 ~vtA 114 (511)
+-.-
T Consensus 106 ieiN 109 (516)
T 1sxj_A 106 LEQN 109 (516)
T ss_dssp EEEC
T ss_pred EEEE
T ss_conf 9971
No 188
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=70.63 E-value=2.8 Score=18.97 Aligned_cols=21 Identities=29% Similarity=0.555 Sum_probs=18.8
Q ss_pred EEEEEECCCCCCHHHHHHHHH
Q ss_conf 124650257659789999999
Q gi|254781215|r 78 FKGAISAGRGIGKTTLNAWLV 98 (511)
Q Consensus 78 ~r~aV~sgrG~GKS~l~a~l~ 98 (511)
+|+.|....|+|||+++..++
T Consensus 4 ~Kv~vvG~~~vGKTsli~r~~ 24 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFV 24 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
T ss_conf 799999979959999999997
No 189
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=70.49 E-value=2.8 Score=18.99 Aligned_cols=23 Identities=26% Similarity=0.330 Sum_probs=19.6
Q ss_pred CCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 10124650257659789999999
Q gi|254781215|r 76 EVFKGAISAGRGIGKTTLNAWLV 98 (511)
Q Consensus 76 ~~~r~aV~sgrG~GKS~l~a~l~ 98 (511)
.++|+.|....|+|||+|+-.++
T Consensus 24 ~~fKI~vlG~~~vGKTSLi~rl~ 46 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFI 46 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
T ss_conf 22499999957928999999998
No 190
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=70.48 E-value=4.2 Score=17.86 Aligned_cols=122 Identities=14% Similarity=0.070 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999998740565554210124650257659789999999999980899669998085899999999999999985
Q gi|254781215|r 55 QLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSL 134 (511)
Q Consensus 55 Q~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~~Q~~~ilw~Ei~k~~~~ 134 (511)
|.++.+++.--...+. -+.+....|+|||+++-.++-. ...+...+.+.+..... +.. .
T Consensus 32 q~~~~~~ll~al~~~~--------~vLl~GppGtGKT~lar~la~~---~~~~~~~~~~~~~~~~~-~~~--------~- 90 (331)
T 2r44_A 32 QKYMINRLLIGICTGG--------HILLEGVPGLAKTLSVNTLAKT---MDLDFHRIQFTPDLLPS-DLI--------G- 90 (331)
T ss_dssp CHHHHHHHHHHHHHTC--------CEEEESCCCHHHHHHHHHHHHH---TTCCEEEEECCTTCCHH-HHH--------E-
T ss_pred CHHHHHHHHHHHHCCC--------CEEEECCCCCHHHHHHHHHHHH---CCCCCEEECCCCCCCCC-CCC--------C-
T ss_conf 6999999999997699--------5899899985299999999975---57661330467776643-322--------3-
Q ss_pred CHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHCCCCCCEEEEECCHHCCCHHHHHHHHHH
Q ss_conf 50001344432222223334443211123578616985303575561002120267614999711102997889888888
Q gi|254781215|r 135 LPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGF 214 (511)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ea~~G~h~~~~~lvI~DEAsgI~d~i~e~i~~~ 214 (511)
.. .. ......+.... ...+ . ..+++||..-.++.+...+...
T Consensus 91 ~~-----------~~--------------~~~~~~~~~~~----------~~~~-~--~v~~iDEi~~~~~~~~~~l~~~ 132 (331)
T 2r44_A 91 TM-----------IY--------------NQHKGNFEVKK----------GPVF-S--NFILADEVNRSPAKVQSALLEC 132 (331)
T ss_dssp EE-----------EE--------------ETTTTEEEEEE----------CTTC-S--SEEEEETGGGSCHHHHHHHHHH
T ss_pred CC-----------CC--------------CCCCCCCEECC----------CCCC-C--CCCCCCCHHHCCHHHHHHHHHH
T ss_conf 21-----------22--------------33445430003----------4222-3--6532546554641234466541
Q ss_pred HCCC-----------CCCEEEEEECCCCCCCC
Q ss_conf 5079-----------98138998238998765
Q gi|254781215|r 215 LTER-----------NANRFWIMTSNPRRLSG 235 (511)
Q Consensus 215 Lt~~-----------g~~~~~i~~~nP~~~~g 235 (511)
|... .....++++.||....|
T Consensus 133 l~~~~v~~~~~~~~l~~~~~~~a~~Np~~~~g 164 (331)
T 2r44_A 133 MQEKQVTIGDTTYPLDNPFLVLATQNPVEQEG 164 (331)
T ss_dssp HHHSEEEETTEEEECCSSCEEEEEECTTCCSC
T ss_pred CCCCEEEEEEEEEEECCCEEEEECCCCCCCCC
T ss_conf 25407987556798078506751478766567
No 191
>2dpx_A GTP-binding protein RAD; GTPase, small-G, RGK, signal transduction, diabetes, signaling protein; HET: GDP; 1.80A {Homo sapiens} PDB: 2gjs_A*
Probab=70.39 E-value=2.9 Score=18.86 Aligned_cols=23 Identities=26% Similarity=0.473 Sum_probs=19.0
Q ss_pred CCCEEEEEECCCCCCHHHHHHHH
Q ss_conf 21012465025765978999999
Q gi|254781215|r 75 PEVFKGAISAGRGIGKTTLNAWL 97 (511)
Q Consensus 75 ~~~~r~aV~sgrG~GKS~l~a~l 97 (511)
..++|+.|....|+|||++...+
T Consensus 5 ~~ifKi~lvG~~~vGKSsli~~~ 27 (174)
T 2dpx_A 5 ESVYKVLLLGAPGVGKSALARIF 27 (174)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHH
T ss_conf 76889999999995899999999
No 192
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP binding protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=70.37 E-value=2.9 Score=18.86 Aligned_cols=22 Identities=23% Similarity=0.552 Sum_probs=18.8
Q ss_pred CCEEEEEECCCCCCHHHHHHHH
Q ss_conf 1012465025765978999999
Q gi|254781215|r 76 EVFKGAISAGRGIGKTTLNAWL 97 (511)
Q Consensus 76 ~~~r~aV~sgrG~GKS~l~a~l 97 (511)
.++|+.|....|+|||++...+
T Consensus 3 ~~yKi~vvG~~~vGKTsLi~~~ 24 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLF 24 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHH
T ss_pred CEEEEEEECCCCCCHHHHHHHH
T ss_conf 5579999999996989999999
No 193
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=70.27 E-value=4.3 Score=17.83 Aligned_cols=88 Identities=11% Similarity=-0.026 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHC---CCCCC----CCCCEEEEEECCCCCCHHHHHH
Q ss_conf 6665288667764214557775655578458999999999998740---56555----4210124650257659789999
Q gi|254781215|r 23 EIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLN---SVNNP----NPEVFKGAISAGRGIGKTTLNA 95 (511)
Q Consensus 23 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~P~~WQ~e~l~~i~~~~~~---~~~~~----~~~~~r~aV~sgrG~GKS~l~a 95 (511)
++...++.-++-..- +..+....-|. ..+.+.+.+.+.+ +.... .....-+.+....|+|||+.+|
T Consensus 47 ~vv~~~~~~ik~~~~----~~~v~~~~~~~---~~i~kiv~~eL~~llg~~~~~~~~~~~~p~Vi~lvG~~GvGKTTT~a 119 (504)
T 2j37_W 47 KLVKQLRENVKSAID----LEEMASGLNKR---KMIQHAVFKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCS 119 (504)
T ss_dssp STTHHHHHHHHHHHT----TCCCCSSSCHH---HHHHHHHHHHHHHHHCCCCCCCCCCSS--EEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHHHHHHHC----CCCCCCCCCHH---HHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCCCCHH
T ss_conf 999999999999971----25366779989---99999999999998486654344356897599996687888655089
Q ss_pred HHHHHHHHHCCCCEEEEEECCHH
Q ss_conf 99999998089966999808589
Q gi|254781215|r 96 WLVLWLMSTRPGISVICLANSET 118 (511)
Q Consensus 96 ~l~lw~l~~~p~~kv~vtApt~~ 118 (511)
=++.|+. .+.....+++|-|++
T Consensus 120 KLA~~~~-~~g~kv~Lva~Dt~R 141 (504)
T 2j37_W 120 KLAYYYQ-RKGWKTCLICADTFR 141 (504)
T ss_dssp HHHHHHH-HTTCCEEEEEECCSS
T ss_pred HHHHHHH-HHHCCCCCCCCCCCC
T ss_conf 9999998-600202000012367
No 194
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=70.16 E-value=4.3 Score=17.82 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=19.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 12465025765978999999999
Q gi|254781215|r 78 FKGAISAGRGIGKTTLNAWLVLW 100 (511)
Q Consensus 78 ~r~aV~sgrG~GKS~l~a~l~lw 100 (511)
-|+.+-+|.|+|||++++.++-+
T Consensus 158 QR~~Ifg~~G~GKT~Ll~~i~~~ 180 (438)
T 2dpy_A 158 QRMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCCCHHHHHHHHHH
T ss_conf 63253268999803987777762
No 195
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=69.81 E-value=3 Score=18.78 Aligned_cols=22 Identities=27% Similarity=0.386 Sum_probs=19.0
Q ss_pred CEEEEEECCCCCCHHHHHHHHH
Q ss_conf 0124650257659789999999
Q gi|254781215|r 77 VFKGAISAGRGIGKTTLNAWLV 98 (511)
Q Consensus 77 ~~r~aV~sgrG~GKS~l~a~l~ 98 (511)
-+|+.|....|+|||+++..++
T Consensus 6 ~fKi~viG~~~vGKTsli~~~~ 27 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFV 27 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHH
T ss_conf 8999999999949999999998
No 196
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=69.70 E-value=3 Score=18.76 Aligned_cols=22 Identities=18% Similarity=0.380 Sum_probs=18.6
Q ss_pred CEEEEEECCCCCCHHHHHHHHH
Q ss_conf 0124650257659789999999
Q gi|254781215|r 77 VFKGAISAGRGIGKTTLNAWLV 98 (511)
Q Consensus 77 ~~r~aV~sgrG~GKS~l~a~l~ 98 (511)
.+|+.|...+|+|||+|+.-++
T Consensus 28 ~~Ki~v~G~~~vGKTsLi~~~~ 49 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLC 49 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
T ss_conf 4399999999979899999996
No 197
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=69.52 E-value=3.2 Score=18.66 Aligned_cols=24 Identities=25% Similarity=0.167 Sum_probs=19.4
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 101246502576597899999999
Q gi|254781215|r 76 EVFKGAISAGRGIGKTTLNAWLVL 99 (511)
Q Consensus 76 ~~~r~aV~sgrG~GKS~l~a~l~l 99 (511)
.-+|+.|....|+|||+|+..++-
T Consensus 11 ~~~Ki~vvG~~~vGKTsLi~~~~~ 34 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVK 34 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 075999999899689999999985
No 198
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=69.50 E-value=3.6 Score=18.33 Aligned_cols=25 Identities=20% Similarity=0.240 Sum_probs=20.2
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 4210124650257659789999999
Q gi|254781215|r 74 NPEVFKGAISAGRGIGKTTLNAWLV 98 (511)
Q Consensus 74 ~~~~~r~aV~sgrG~GKS~l~a~l~ 98 (511)
.-..+|+.|....|+|||+|+..++
T Consensus 19 ~~~~~KIvvvG~~~vGKTsLi~~~~ 43 (189)
T 2gf9_A 19 SDYMFKLLLIGNSSVGKTSFLFRYA 43 (189)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEEEEECCCCCCHHHHHHHHH
T ss_conf 7747899999999969899988986
No 199
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=69.41 E-value=3.1 Score=18.67 Aligned_cols=22 Identities=27% Similarity=0.327 Sum_probs=18.8
Q ss_pred CEEEEEECCCCCCHHHHHHHHH
Q ss_conf 0124650257659789999999
Q gi|254781215|r 77 VFKGAISAGRGIGKTTLNAWLV 98 (511)
Q Consensus 77 ~~r~aV~sgrG~GKS~l~a~l~ 98 (511)
++|+.|....|+|||+|+-.++
T Consensus 8 ~~Ki~vlG~~~vGKSsLi~r~~ 29 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYA 29 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHH
T ss_conf 2689999989909899999997
No 200
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme A kinase, structural genomics, joint center for structural genomics, JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=69.31 E-value=2.9 Score=18.90 Aligned_cols=35 Identities=20% Similarity=0.201 Sum_probs=24.5
Q ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 55421012465025765978999999999998089966999
Q gi|254781215|r 72 NPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVIC 112 (511)
Q Consensus 72 ~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~v 112 (511)
++.+.|. +++..|=|+|||+++..+.-- -|..++.
T Consensus 8 ~~~~~mI-IgiTG~igSGKStv~~~l~~~-----~g~~vid 42 (192)
T 2grj_A 8 HHHHHMV-IGVTGKIGTGKSTVCEILKNK-----YGAHVVN 42 (192)
T ss_dssp --CCEEE-EEEECSTTSSHHHHHHHHHHH-----HCCEEEE
T ss_pred CCCCCEE-EEEECCCCCCHHHHHHHHHHH-----CCCEEEE
T ss_conf 2557779-998789878899999999885-----3998997
No 201
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=69.13 E-value=3.2 Score=18.64 Aligned_cols=23 Identities=30% Similarity=0.388 Sum_probs=19.5
Q ss_pred CCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 10124650257659789999999
Q gi|254781215|r 76 EVFKGAISAGRGIGKTTLNAWLV 98 (511)
Q Consensus 76 ~~~r~aV~sgrG~GKS~l~a~l~ 98 (511)
..+|+.|....|+|||+++..++
T Consensus 20 y~fKI~vvG~~~vGKTSLi~rl~ 42 (191)
T 2a5j_A 20 YLFKYIIIGDTGVGKSCLLLQFT 42 (191)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHH
T ss_pred EEEEEEEECCCCCCHHHHHHHHH
T ss_conf 16899999989979999999984
No 202
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=68.93 E-value=4.6 Score=17.65 Aligned_cols=130 Identities=12% Similarity=0.080 Sum_probs=65.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHC-----CCCEEEEEECCH
Q ss_conf 756555784589999999999987405655542101246502576597899999999999808-----996699980858
Q gi|254781215|r 43 TPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTR-----PGISVICLANSE 117 (511)
Q Consensus 43 ~~~~~~~~P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~-----p~~kv~vtApt~ 117 (511)
+.++...|= ..|+-+-+.--.++.+. -+.+...-|+|||+++-.++--..-.. .+.+++-+-...
T Consensus 19 g~l~~~igR---d~Ei~~l~~iL~r~~k~-------n~lLVGepGVGKTaiV~~la~ri~~~~vp~~L~~~~i~~ld~~~ 88 (187)
T 2p65_A 19 GKLDPVIGR---DTEIRRAIQILSRRTKN-------NPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSS 88 (187)
T ss_dssp TCSCCCCSC---HHHHHHHHHHHTSSSSC-------EEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHHH
T ss_pred CCCCCCCCH---HHHHHHHHHHHHCCCCC-------CCEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHH
T ss_conf 999877482---99999999998566789-------96685588736799999999999808999888698799960889
Q ss_pred HHHHHHHHHHHHHHHHHCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHCCCCCCEEEEE
Q ss_conf 99999999999999985500013444322222233344432111235786169853035755610021202676149997
Q gi|254781215|r 118 TQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIN 197 (511)
Q Consensus 118 ~Q~~~ilw~Ei~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ea~~G~h~~~~~lvI~ 197 (511)
=.+.....++....++.+... ..+..+.+.+++
T Consensus 89 LvAG~~~~G~~e~rl~~l~~e-----------------------------------------------~~~~~~~iILfi 121 (187)
T 2p65_A 89 LIAGAKYRGDFEERLKSILKE-----------------------------------------------VQDAEGQVVMFI 121 (187)
T ss_dssp HHHHCCSHHHHHHHHHHHHHH-----------------------------------------------HHHTTTSEEEEE
T ss_pred HHCCCCCHHHHHHHHHHHHHH-----------------------------------------------HHHCCCCEEEEE
T ss_conf 874898365799999999999-----------------------------------------------984658869983
Q ss_pred CCHHCCC---------HHHHHHHHHHHCCCCCCEEEEEECCCC
Q ss_conf 1110299---------788988888850799813899823899
Q gi|254781215|r 198 DEASGTP---------DVINLGILGFLTERNANRFWIMTSNPR 231 (511)
Q Consensus 198 DEAsgI~---------d~i~e~i~~~Lt~~g~~~~~i~~~nP~ 231 (511)
||.+.+- ..+.+.+.|.|+.+. ..+++.++|.
T Consensus 122 De~h~l~~~g~~~~~~~~~~~iLkp~L~~g~--l~~I~atT~e 162 (187)
T 2p65_A 122 DEIHTVVGAGAVAEGALDAGNILKPMLARGE--LRCIGATTVS 162 (187)
T ss_dssp TTGGGGSSSSSSCTTSCCTHHHHHHHHHTTC--SCEEEEECHH
T ss_pred CHHHHHHCCCCCCCCCHHHHHHHHHHHHCCC--CEEEEECCHH
T ss_conf 3189883367767772669999999870798--1799847999
No 203
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophilin-4, GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=68.78 E-value=3.3 Score=18.54 Aligned_cols=23 Identities=22% Similarity=0.173 Sum_probs=19.9
Q ss_pred CCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 10124650257659789999999
Q gi|254781215|r 76 EVFKGAISAGRGIGKTTLNAWLV 98 (511)
Q Consensus 76 ~~~r~aV~sgrG~GKS~l~a~l~ 98 (511)
..+|+.|....++|||+|+..++
T Consensus 10 ~l~KivvvG~~~vGKTsLi~~~~ 32 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYT 32 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEEEECCCCCCHHHHHHHHH
T ss_conf 89899999999978899999997
No 204
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=68.74 E-value=3.2 Score=18.63 Aligned_cols=21 Identities=24% Similarity=0.491 Sum_probs=18.5
Q ss_pred EEEEEECCCCCCHHHHHHHHH
Q ss_conf 124650257659789999999
Q gi|254781215|r 78 FKGAISAGRGIGKTTLNAWLV 98 (511)
Q Consensus 78 ~r~aV~sgrG~GKS~l~a~l~ 98 (511)
+|++|....|+|||.|+..++
T Consensus 24 ~KI~vvG~~~vGKTSLi~~~~ 44 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFV 44 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
T ss_conf 799999989989999999997
No 205
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=68.70 E-value=3.3 Score=18.55 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=19.8
Q ss_pred CCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 10124650257659789999999
Q gi|254781215|r 76 EVFKGAISAGRGIGKTTLNAWLV 98 (511)
Q Consensus 76 ~~~r~aV~sgrG~GKS~l~a~l~ 98 (511)
.++|+.|....|+|||+|+..++
T Consensus 12 ~~~KivviG~~~vGKTsLi~r~~ 34 (223)
T 3cpj_B 12 LLFKIVLIGDSGVGKSNLLSRFT 34 (223)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHH
T ss_pred EEEEEEEECCCCCCHHHHHHHHH
T ss_conf 36599999999969999999997
No 206
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=68.61 E-value=3.2 Score=18.62 Aligned_cols=24 Identities=21% Similarity=0.189 Sum_probs=20.0
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 210124650257659789999999
Q gi|254781215|r 75 PEVFKGAISAGRGIGKTTLNAWLV 98 (511)
Q Consensus 75 ~~~~r~aV~sgrG~GKS~l~a~l~ 98 (511)
+..+|+.|....|+|||++...++
T Consensus 6 ~~~iKivvvG~~~vGKTsli~r~~ 29 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYT 29 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHH
T ss_conf 873499999979979899999997
No 207
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=68.53 E-value=2.8 Score=18.96 Aligned_cols=23 Identities=39% Similarity=0.245 Sum_probs=18.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 12465025765978999999999
Q gi|254781215|r 78 FKGAISAGRGIGKTTLNAWLVLW 100 (511)
Q Consensus 78 ~r~aV~sgrG~GKS~l~a~l~lw 100 (511)
+=++|.++-|+|||+++..|.-.
T Consensus 22 ~iI~I~G~~GSGKTTla~~L~~~ 44 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 99999898988599999999998
No 208
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=68.41 E-value=3.3 Score=18.56 Aligned_cols=23 Identities=30% Similarity=0.556 Sum_probs=20.1
Q ss_pred CCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 10124650257659789999999
Q gi|254781215|r 76 EVFKGAISAGRGIGKTTLNAWLV 98 (511)
Q Consensus 76 ~~~r~aV~sgrG~GKS~l~a~l~ 98 (511)
..+|+.+....|+|||+|...++
T Consensus 8 ~~~Ki~ivG~~~vGKSsLi~~~~ 30 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFI 30 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
T ss_conf 86799999979989999999997
No 209
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=68.33 E-value=3.5 Score=18.41 Aligned_cols=23 Identities=26% Similarity=0.242 Sum_probs=19.2
Q ss_pred CCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 10124650257659789999999
Q gi|254781215|r 76 EVFKGAISAGRGIGKTTLNAWLV 98 (511)
Q Consensus 76 ~~~r~aV~sgrG~GKS~l~a~l~ 98 (511)
..+|+.|....|+|||+|...++
T Consensus 5 y~~KI~vlG~~~vGKSsLi~r~~ 27 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYC 27 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHH
T ss_pred EEEEEEEECCCCCCHHHHHHHHH
T ss_conf 76799999999959999999997
No 210
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=68.19 E-value=4.7 Score=17.56 Aligned_cols=55 Identities=15% Similarity=0.007 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHCCC---CCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 9999999999874056---55542101246502576597899999999999808996699980
Q gi|254781215|r 55 QLEFMEVVDAHCLNSV---NNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLA 114 (511)
Q Consensus 55 Q~e~l~~i~~~~~~~~---~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtA 114 (511)
+++.|+++-....+.. ....+....+-.....|+|||.++..++--. +..++.+.
T Consensus 48 ~k~~l~e~i~~l~~~~~~~~~g~~~~rgiLL~GPpGtGKT~la~aiA~e~-----~~~~~~i~ 105 (278)
T 1iy2_A 48 AKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA-----RVPFITAS 105 (278)
T ss_dssp HHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHT-----TCCEEEEE
T ss_pred HHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHC-----CCCEEEEE
T ss_conf 99999999998559999986799988846876874458648999999974-----99769988
No 211
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=68.17 E-value=3 Score=18.78 Aligned_cols=23 Identities=30% Similarity=0.270 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 24650257659789999999999
Q gi|254781215|r 79 KGAISAGRGIGKTTLNAWLVLWL 101 (511)
Q Consensus 79 r~aV~sgrG~GKS~l~a~l~lw~ 101 (511)
.+.+...-|+|||+++..|+--+
T Consensus 13 nI~i~G~pG~GKTTiak~La~~l 35 (180)
T 3iij_A 13 NILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
T ss_conf 57998999988899999999996
No 212
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 3ng1_A 1ffh_A 2ng1_A*
Probab=68.06 E-value=4.7 Score=17.54 Aligned_cols=39 Identities=23% Similarity=0.221 Sum_probs=29.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHH
Q ss_conf 2465025765978999999999998089966999808589
Q gi|254781215|r 79 KGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSET 118 (511)
Q Consensus 79 r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~~ 118 (511)
-+.+....|+|||+.++=++.++... .....++++-|++
T Consensus 100 i~~lvG~~G~GKTTt~aKLA~~~~~~-g~kv~li~~Dt~R 138 (295)
T 1ls1_A 100 LWFLVGLQGSGKTTTAAKLALYYKGK-GRRPLLVAADTQR 138 (295)
T ss_dssp EEEEECCTTTTHHHHHHHHHHHHHHT-TCCEEEEECCSSC
T ss_pred EEEEECCCCCCCEEHHHHHHHHHHHC-CCEEEEEECCCCC
T ss_conf 99996778898521199999999877-9844577414555
No 213
>1yzq_A Small GTP binding protein RAB6 isoform; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.78A {Homo sapiens} SCOP: c.37.1.8 PDB: 3cwz_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=68.02 E-value=3.2 Score=18.64 Aligned_cols=22 Identities=27% Similarity=0.412 Sum_probs=19.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHH
Q ss_conf 1246502576597899999999
Q gi|254781215|r 78 FKGAISAGRGIGKTTLNAWLVL 99 (511)
Q Consensus 78 ~r~aV~sgrG~GKS~l~a~l~l 99 (511)
+|+.|..-.|+|||+|...++-
T Consensus 7 ~KI~vvG~~~vGKSsLi~~~~~ 28 (170)
T 1yzq_A 7 FKLVFLGEQSVGKTSLITRFMY 28 (170)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 8999999499799999999983
No 214
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A*
Probab=68.01 E-value=3.4 Score=18.45 Aligned_cols=25 Identities=24% Similarity=0.383 Sum_probs=20.6
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 2101246502576597899999999
Q gi|254781215|r 75 PEVFKGAISAGRGIGKTTLNAWLVL 99 (511)
Q Consensus 75 ~~~~r~aV~sgrG~GKS~l~a~l~l 99 (511)
...+|+.|....|+|||++...++-
T Consensus 27 ~~~fKI~ivG~~~vGKTSLi~~l~~ 51 (191)
T 1oix_A 27 DYLFKVVLIGDSGVGKSNLLSRFTR 51 (191)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEEEEECCCCCCHHHHHHHHHH
T ss_conf 7897999999999398999999972
No 215
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=67.84 E-value=3.5 Score=18.37 Aligned_cols=23 Identities=30% Similarity=0.406 Sum_probs=19.4
Q ss_pred CCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 10124650257659789999999
Q gi|254781215|r 76 EVFKGAISAGRGIGKTTLNAWLV 98 (511)
Q Consensus 76 ~~~r~aV~sgrG~GKS~l~a~l~ 98 (511)
..+|+.|....++|||+++..++
T Consensus 9 ~~fKI~vlG~~~vGKTSli~~~~ 31 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFK 31 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEEEECCCCCCHHHHHHHHH
T ss_conf 57689999989969899999997
No 216
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21
Probab=67.72 E-value=4.8 Score=17.50 Aligned_cols=48 Identities=13% Similarity=0.145 Sum_probs=28.0
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 45899999999999874056555421012465025765978999999999
Q gi|254781215|r 51 PRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLW 100 (511)
Q Consensus 51 P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw 100 (511)
+..++..+-+.+..-.........|. -+-+..+-|+|||+++..++--
T Consensus 9 ~~~~~~~l~~~l~~~~~~~~~~~~P~--~ill~GppGsGKT~la~~la~~ 56 (287)
T 1gvn_B 9 DKQFENRLNDNLEELIQGKKAVESPT--AFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCSSCE--EEEEECCTTSCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCE--EEEEECCCCCCHHHHHHHHHHH
T ss_conf 99999999999999864876789998--9998898976589999999998
No 217
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluorescence, membrane, disease mutation, golgi stack, GTP- binding; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=67.26 E-value=3.6 Score=18.32 Aligned_cols=21 Identities=29% Similarity=0.569 Sum_probs=18.3
Q ss_pred EEEEEECCCCCCHHHHHHHHH
Q ss_conf 124650257659789999999
Q gi|254781215|r 78 FKGAISAGRGIGKTTLNAWLV 98 (511)
Q Consensus 78 ~r~aV~sgrG~GKS~l~a~l~ 98 (511)
+|+.+....|+|||++...++
T Consensus 4 ~Kv~liG~~~vGKTSll~~l~ 24 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLI 24 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
T ss_conf 699999999979999999997
No 218
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=67.08 E-value=3.7 Score=18.20 Aligned_cols=40 Identities=15% Similarity=0.046 Sum_probs=26.7
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHH
Q ss_conf 012465025765978999999999998089966999808589999999
Q gi|254781215|r 77 VFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTL 124 (511)
Q Consensus 77 ~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~~Q~~~il 124 (511)
|..+++.+|=|+|||+++..+.-. .+..++ .+.+.++..+
T Consensus 1 M~iIgltG~~gSGKsTva~~L~e~-----~g~~~i---~~ad~~~~~~ 40 (241)
T 1dek_A 1 MKLIFLSGVKRSGKDTTADFIMSN-----YSAVKY---QLAGPIKDAL 40 (241)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH-----SCEEEC---CTTHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH-----CCCEEE---CCHHHHHHHH
T ss_conf 979997799988899999999997-----599798---8419999999
No 219
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=66.83 E-value=3.8 Score=18.17 Aligned_cols=21 Identities=24% Similarity=0.427 Sum_probs=18.6
Q ss_pred EEEEEECCCCCCHHHHHHHHH
Q ss_conf 124650257659789999999
Q gi|254781215|r 78 FKGAISAGRGIGKTTLNAWLV 98 (511)
Q Consensus 78 ~r~aV~sgrG~GKS~l~a~l~ 98 (511)
+|+.|....|+|||+++.-++
T Consensus 7 ~Ki~vvG~~~vGKSSli~~~~ 27 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFV 27 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
T ss_conf 799999979968999999998
No 220
>2fna_A Conserved hypothetical protein; 13814777, structural genomics, joint center for structural genomics, JCSG; HET: MSE ADP; 2.00A {Sulfolobus solfataricus P2} SCOP: a.4.5.11 c.37.1.20
Probab=66.68 E-value=3.2 Score=18.58 Aligned_cols=19 Identities=16% Similarity=0.128 Sum_probs=15.9
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 4650257659789999999
Q gi|254781215|r 80 GAISAGRGIGKTTLNAWLV 98 (511)
Q Consensus 80 ~aV~sgrG~GKS~l~a~l~ 98 (511)
+.|.+.+|+|||+++.-++
T Consensus 33 vli~G~~GiGKTsLl~~~~ 51 (357)
T 2fna_A 33 TLVLGLRRTGKSSIIKIGI 51 (357)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
T ss_conf 9998399998999999999
No 221
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 1x1r_A* 1x1s_A*
Probab=66.44 E-value=3.9 Score=18.09 Aligned_cols=21 Identities=24% Similarity=0.483 Sum_probs=19.0
Q ss_pred EEEEEECCCCCCHHHHHHHHH
Q ss_conf 124650257659789999999
Q gi|254781215|r 78 FKGAISAGRGIGKTTLNAWLV 98 (511)
Q Consensus 78 ~r~aV~sgrG~GKS~l~a~l~ 98 (511)
+|++|....|+|||+++..++
T Consensus 19 ~Ki~lvG~~~vGKTsli~r~~ 39 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFF 39 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
T ss_conf 799999989968899999996
No 222
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2ke5_A*
Probab=66.34 E-value=4 Score=18.01 Aligned_cols=22 Identities=23% Similarity=0.425 Sum_probs=18.9
Q ss_pred CEEEEEECCCCCCHHHHHHHHH
Q ss_conf 0124650257659789999999
Q gi|254781215|r 77 VFKGAISAGRGIGKTTLNAWLV 98 (511)
Q Consensus 77 ~~r~aV~sgrG~GKS~l~a~l~ 98 (511)
.+|+.|....|+|||++...++
T Consensus 4 ~~KI~iiG~~~vGKSsli~~~~ 25 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFM 25 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHH
T ss_conf 1699999989988899999996
No 223
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=66.02 E-value=4.9 Score=17.48 Aligned_cols=23 Identities=39% Similarity=0.310 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 24650257659789999999999
Q gi|254781215|r 79 KGAISAGRGIGKTTLNAWLVLWL 101 (511)
Q Consensus 79 r~aV~sgrG~GKS~l~a~l~lw~ 101 (511)
+++|.++=|+|||+++..|+-++
T Consensus 2 ~I~IeG~~GsGKST~~k~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998889878999999999984
No 224
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=65.98 E-value=3.9 Score=18.07 Aligned_cols=22 Identities=23% Similarity=0.439 Sum_probs=18.6
Q ss_pred CEEEEEECCCCCCHHHHHHHHH
Q ss_conf 0124650257659789999999
Q gi|254781215|r 77 VFKGAISAGRGIGKTTLNAWLV 98 (511)
Q Consensus 77 ~~r~aV~sgrG~GKS~l~a~l~ 98 (511)
-+||.|....|+|||+|+..++
T Consensus 8 ~~KV~vvG~~~vGKTsLi~r~~ 29 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFV 29 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
T ss_conf 7489999969988999999996
No 225
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcription; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=65.76 E-value=5.3 Score=17.26 Aligned_cols=28 Identities=25% Similarity=0.249 Sum_probs=24.9
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHH
Q ss_conf 0124650257659789999999999980
Q gi|254781215|r 77 VFKGAISAGRGIGKTTLNAWLVLWLMST 104 (511)
Q Consensus 77 ~~r~aV~sgrG~GKS~l~a~l~lw~l~~ 104 (511)
..||-|..+..+|||+++-.|+.+.+-.
T Consensus 138 GPRVLV~Gp~~sGKSTl~r~L~Nyalr~ 165 (460)
T 2npi_A 138 GPRVVIVGGSQTGKTSLSRTLCSYALKF 165 (460)
T ss_dssp CCCEEEEESTTSSHHHHHHHHHHTTHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 9889998998879899999999999852
No 226
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=65.71 E-value=3.7 Score=18.23 Aligned_cols=22 Identities=27% Similarity=0.170 Sum_probs=17.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q ss_conf 2465025765978999999999
Q gi|254781215|r 79 KGAISAGRGIGKTTLNAWLVLW 100 (511)
Q Consensus 79 r~aV~sgrG~GKS~l~a~l~lw 100 (511)
.+.+...-|+|||+++-.++--
T Consensus 3 hi~I~G~~GsGKTTL~~~l~~~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999899982299999999866
No 227
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=65.44 E-value=4.2 Score=17.89 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=19.2
Q ss_pred CCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 10124650257659789999999
Q gi|254781215|r 76 EVFKGAISAGRGIGKTTLNAWLV 98 (511)
Q Consensus 76 ~~~r~aV~sgrG~GKS~l~a~l~ 98 (511)
..+|+.|....|+|||++...+.
T Consensus 14 ~~~KI~v~G~~~vGKTsli~~~~ 36 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFT 36 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
T ss_conf 61279999999969899999997
No 228
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=65.42 E-value=4.5 Score=17.67 Aligned_cols=24 Identities=21% Similarity=0.358 Sum_probs=20.1
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 210124650257659789999999
Q gi|254781215|r 75 PEVFKGAISAGRGIGKTTLNAWLV 98 (511)
Q Consensus 75 ~~~~r~aV~sgrG~GKS~l~a~l~ 98 (511)
...+|+.|....|+|||+++..++
T Consensus 12 ~~~~KIviiG~~~vGKTsli~r~~ 35 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFM 35 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHH
T ss_conf 633799999989988999999996
No 229
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 1xcg_B 1tx4_B* 1kmq_A* 1dpf_A* ...
Probab=65.42 E-value=4.4 Score=17.72 Aligned_cols=21 Identities=29% Similarity=0.129 Sum_probs=18.0
Q ss_pred EEEEEECCCCCCHHHHHHHHH
Q ss_conf 124650257659789999999
Q gi|254781215|r 78 FKGAISAGRGIGKTTLNAWLV 98 (511)
Q Consensus 78 ~r~aV~sgrG~GKS~l~a~l~ 98 (511)
.|+.|....|+|||+++..++
T Consensus 26 ~KvvvlG~~~vGKTsLi~r~~ 46 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFS 46 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
T ss_conf 289999999979899999996
No 230
>3bos_A Putative DNA replication factor; YP_927791.1, putative DNA replication regulator HDA, structural genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis SB2B}
Probab=65.21 E-value=5.4 Score=17.19 Aligned_cols=23 Identities=13% Similarity=-0.175 Sum_probs=17.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 46502576597899999999999
Q gi|254781215|r 80 GAISAGRGIGKTTLNAWLVLWLM 102 (511)
Q Consensus 80 ~aV~sgrG~GKS~l~a~l~lw~l 102 (511)
+.+-++.|+|||+|+..++.-..
T Consensus 55 l~l~Gp~GsGKThL~~ai~~~~~ 77 (242)
T 3bos_A 55 IYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 98889999989999999999854
No 231
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=65.12 E-value=4 Score=18.03 Aligned_cols=21 Identities=14% Similarity=0.230 Sum_probs=18.2
Q ss_pred EEEEEECCCCCCHHHHHHHHH
Q ss_conf 124650257659789999999
Q gi|254781215|r 78 FKGAISAGRGIGKTTLNAWLV 98 (511)
Q Consensus 78 ~r~aV~sgrG~GKS~l~a~l~ 98 (511)
+|+.|....|+|||.++..++
T Consensus 8 ~ki~vvG~~~vGKTsli~r~~ 28 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFL 28 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
T ss_conf 699999989988999999997
No 232
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=65.09 E-value=3.6 Score=18.27 Aligned_cols=24 Identities=29% Similarity=0.127 Sum_probs=19.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 124650257659789999999999
Q gi|254781215|r 78 FKGAISAGRGIGKTTLNAWLVLWL 101 (511)
Q Consensus 78 ~r~aV~sgrG~GKS~l~a~l~lw~ 101 (511)
..+.|.++-|+|||+++..|+=-+
T Consensus 7 ~iI~i~G~pGsGKsTia~~Lae~~ 30 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 489998999998899999999996
No 233
>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=65.07 E-value=3.9 Score=18.05 Aligned_cols=21 Identities=29% Similarity=0.431 Sum_probs=18.2
Q ss_pred EEEEEECCCCCCHHHHHHHHH
Q ss_conf 124650257659789999999
Q gi|254781215|r 78 FKGAISAGRGIGKTTLNAWLV 98 (511)
Q Consensus 78 ~r~aV~sgrG~GKS~l~a~l~ 98 (511)
+|++|....++|||+|+-.++
T Consensus 17 ~Ki~vvG~~~vGKSsLi~~~~ 37 (211)
T 3bbp_A 17 FKLVFLGEQSVGKTSLITRFM 37 (211)
T ss_dssp CEEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
T ss_conf 799999959979999999997
No 234
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=65.06 E-value=4.4 Score=17.77 Aligned_cols=24 Identities=25% Similarity=0.397 Sum_probs=20.1
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 210124650257659789999999
Q gi|254781215|r 75 PEVFKGAISAGRGIGKTTLNAWLV 98 (511)
Q Consensus 75 ~~~~r~aV~sgrG~GKS~l~a~l~ 98 (511)
...+|+.|....|+|||+++-.++
T Consensus 18 ~~l~Kv~lvG~~~vGKTsLi~rl~ 41 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFC 41 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHH
T ss_conf 866899999999909999999997
No 235
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=64.65 E-value=4.4 Score=17.75 Aligned_cols=21 Identities=24% Similarity=0.320 Sum_probs=18.5
Q ss_pred EEEEEECCCCCCHHHHHHHHH
Q ss_conf 124650257659789999999
Q gi|254781215|r 78 FKGAISAGRGIGKTTLNAWLV 98 (511)
Q Consensus 78 ~r~aV~sgrG~GKS~l~a~l~ 98 (511)
+|+.|....++|||+|...++
T Consensus 7 ~Ki~vvG~~~vGKTsLi~~~~ 27 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFA 27 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
T ss_conf 899999989979899999998
No 236
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=64.56 E-value=4.3 Score=17.79 Aligned_cols=23 Identities=22% Similarity=0.277 Sum_probs=19.8
Q ss_pred CCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 10124650257659789999999
Q gi|254781215|r 76 EVFKGAISAGRGIGKTTLNAWLV 98 (511)
Q Consensus 76 ~~~r~aV~sgrG~GKS~l~a~l~ 98 (511)
..+|+.|....|+|||+++..++
T Consensus 28 ~~fKivvvG~~~vGKTSLi~rl~ 50 (201)
T 2hup_A 28 FLFKLVLVGDASVGKTCVVQRFK 50 (201)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHH
T ss_pred EEEEEEEECCCCCCHHHHHHHHH
T ss_conf 78899999999908999999996
No 237
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=64.50 E-value=4.5 Score=17.70 Aligned_cols=23 Identities=26% Similarity=0.218 Sum_probs=19.2
Q ss_pred CCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 10124650257659789999999
Q gi|254781215|r 76 EVFKGAISAGRGIGKTTLNAWLV 98 (511)
Q Consensus 76 ~~~r~aV~sgrG~GKS~l~a~l~ 98 (511)
.++|+.|....++|||+|+..++
T Consensus 24 ~~iKI~ivG~~~vGKTsLi~rl~ 46 (217)
T 2f7s_A 24 YLIKLLALGDSGVGKTTFLYRYT 46 (217)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHH
T ss_pred EEEEEEEECCCCCCHHHHHHHHH
T ss_conf 78799999979979899999996
No 238
>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal aldimine, schiff base; HET: PLR; 2.35A {Escherichia coli k-12} PDB: 3tat_A*
Probab=64.46 E-value=5.6 Score=17.10 Aligned_cols=66 Identities=6% Similarity=-0.068 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHH
Q ss_conf 999999999987405655542101246502576597899999999999808996699980858999999
Q gi|254781215|r 55 QLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTT 123 (511)
Q Consensus 55 Q~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~~Q~~~i 123 (511)
=.|+.++|+++..+........ -+ |....++|-+...+..++-..++.|+..|++..|++.....+
T Consensus 72 ~~elR~aia~~~~~~~~~~~~~-~~--i~~~~~~~~~~~~~l~~~~~~~~~pgd~vlv~~P~y~~y~~~ 137 (397)
T 3fsl_A 72 LNCYRHAIAPLLFGADHPVLKQ-QR--VATIQTLGGSGALKVGADFLKRYFPESGVWVSDPTWENHVAI 137 (397)
T ss_dssp CHHHHHHHHHHHHCTTCHHHHT-TC--EEEEEESHHHHHHHHHHHHHHHHCTTCCEEEESSCCHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCCCCCC-CE--EEEECCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHH
T ss_conf 8999999999985236976665-53--898347516889999999987517998058648887521899
No 239
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8
Probab=64.36 E-value=2.6 Score=19.23 Aligned_cols=25 Identities=24% Similarity=0.274 Sum_probs=20.9
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 4210124650257659789999999
Q gi|254781215|r 74 NPEVFKGAISAGRGIGKTTLNAWLV 98 (511)
Q Consensus 74 ~~~~~r~aV~sgrG~GKS~l~a~l~ 98 (511)
...++|+.|....|+|||+++..++
T Consensus 5 ~~~~~KI~vlG~~~vGKTSli~~~~ 29 (183)
T 2fu5_C 5 YDYLFKLLLIGDSGVGKTCVLFRFS 29 (183)
T ss_dssp CSEEEEEEEECCCCC----------
T ss_pred CCEEEEEEEECCCCCCHHHHHHHHH
T ss_conf 1546799999999938899999997
No 240
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=64.35 E-value=5.6 Score=17.09 Aligned_cols=39 Identities=28% Similarity=0.175 Sum_probs=29.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHH
Q ss_conf 2465025765978999999999998089966999808589
Q gi|254781215|r 79 KGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSET 118 (511)
Q Consensus 79 r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~~ 118 (511)
-+.+....|+|||+.++=++.|+.- +-...+++++-|++
T Consensus 131 Vi~~vG~~G~GKTTt~aKlA~~~~~-~g~kv~l~~~Dt~R 169 (328)
T 3e70_C 131 VIMFVGFNGSGKTTTIAKLANWLKN-HGFSVVIAASDTFR 169 (328)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEECCSS
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHH-CCCCEEEEECCCCC
T ss_conf 9999768778865438999999996-69960576323245
No 241
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=64.29 E-value=4.9 Score=17.44 Aligned_cols=26 Identities=27% Similarity=0.326 Sum_probs=21.3
Q ss_pred CCCCCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 54210124650257659789999999
Q gi|254781215|r 73 PNPEVFKGAISAGRGIGKTTLNAWLV 98 (511)
Q Consensus 73 ~~~~~~r~aV~sgrG~GKS~l~a~l~ 98 (511)
+....+|+.|....|+|||+++..++
T Consensus 22 ~~~~~fKIvvlG~~~vGKTsLi~~l~ 47 (201)
T 2ew1_A 22 DYDFLFKIVLIGNAGVGKTCLVRRFT 47 (201)
T ss_dssp CCSEEEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCEEEEEEEECCCCCCHHHHHHHHH
T ss_conf 24589799999999959999999997
No 242
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=64.28 E-value=3.6 Score=18.32 Aligned_cols=23 Identities=30% Similarity=0.387 Sum_probs=19.3
Q ss_pred CCCEEEEEECCCCCCHHHHHHHH
Q ss_conf 21012465025765978999999
Q gi|254781215|r 75 PEVFKGAISAGRGIGKTTLNAWL 97 (511)
Q Consensus 75 ~~~~r~aV~sgrG~GKS~l~a~l 97 (511)
...+|+.|....|+|||+++..+
T Consensus 24 ~~~~KIvvlG~~~vGKTSli~rl 46 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERF 46 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHH
T ss_pred CEEEEEEEECCCCCCHHHHHHHH
T ss_conf 24889999999997999999999
No 243
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=64.06 E-value=4.7 Score=17.57 Aligned_cols=23 Identities=22% Similarity=0.476 Sum_probs=19.1
Q ss_pred CCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 10124650257659789999999
Q gi|254781215|r 76 EVFKGAISAGRGIGKTTLNAWLV 98 (511)
Q Consensus 76 ~~~r~aV~sgrG~GKS~l~a~l~ 98 (511)
..+|+.|....|+|||+++..++
T Consensus 5 ~~fKivvvG~~~vGKTsli~r~~ 27 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFA 27 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEEEECCCCCCHHHHHHHHH
T ss_conf 77899999989968899999998
No 244
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ...
Probab=63.80 E-value=4.5 Score=17.69 Aligned_cols=23 Identities=30% Similarity=0.326 Sum_probs=19.0
Q ss_pred CCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 10124650257659789999999
Q gi|254781215|r 76 EVFKGAISAGRGIGKTTLNAWLV 98 (511)
Q Consensus 76 ~~~r~aV~sgrG~GKS~l~a~l~ 98 (511)
.-+|+.|....|+|||+|+..++
T Consensus 14 ~~fKIvlvG~~~vGKTsLi~~~~ 36 (221)
T 3gj0_A 14 VQFKLVLVGDGGTGKTTFVKRHL 36 (221)
T ss_dssp CEEEEEEEECTTSSHHHHHTTBH
T ss_pred CEEEEEEECCCCCCHHHHHHHHH
T ss_conf 06899999999949899999997
No 245
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=63.73 E-value=5.7 Score=17.02 Aligned_cols=35 Identities=23% Similarity=0.169 Sum_probs=26.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 465025765978999999999998089966999808
Q gi|254781215|r 80 GAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLAN 115 (511)
Q Consensus 80 ~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtAp 115 (511)
+.|.+.-|+|||+++..+++-++. ..+.+|++...
T Consensus 38 ~vi~g~~G~GKS~~~~~la~~~a~-~~g~~vl~~s~ 72 (296)
T 1cr0_A 38 IMVTSGSGMGKSTFVRQQALQWGT-AMGKKVGLAML 72 (296)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHH-TSCCCEEEEES
T ss_pred EEEEECCCCHHHHHHHHHHHHHHH-HCCCCEEEEEE
T ss_conf 999978997499999999999998-64787899962
No 246
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=63.33 E-value=4.9 Score=17.44 Aligned_cols=23 Identities=30% Similarity=0.333 Sum_probs=19.7
Q ss_pred CCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 10124650257659789999999
Q gi|254781215|r 76 EVFKGAISAGRGIGKTTLNAWLV 98 (511)
Q Consensus 76 ~~~r~aV~sgrG~GKS~l~a~l~ 98 (511)
.-+|+.|....|+|||.++..++
T Consensus 20 ~~~Ki~viG~~~vGKTSli~~~~ 42 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFL 42 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEEEECCCCCCHHHHHHHHH
T ss_conf 77999999989988999999997
No 247
>3hdt_A Putative kinase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=63.05 E-value=4.3 Score=17.83 Aligned_cols=22 Identities=23% Similarity=0.092 Sum_probs=19.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHH
Q ss_conf 4650257659789999999999
Q gi|254781215|r 80 GAISAGRGIGKTTLNAWLVLWL 101 (511)
Q Consensus 80 ~aV~sgrG~GKS~l~a~l~lw~ 101 (511)
+++..+-|+|||+++..|+--+
T Consensus 17 ItI~g~~GsGKsTia~~LA~~L 38 (223)
T 3hdt_A 17 ITIEREYGSGGRIVGKKLAEEL 38 (223)
T ss_dssp EEEEECTTSCHHHHHHHHHHHH
T ss_pred EEECCCCCCCHHHHHHHHHHHH
T ss_conf 9857999899799999999994
No 248
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=63.02 E-value=4.9 Score=17.43 Aligned_cols=22 Identities=14% Similarity=0.267 Sum_probs=18.9
Q ss_pred CEEEEEECCCCCCHHHHHHHHH
Q ss_conf 0124650257659789999999
Q gi|254781215|r 77 VFKGAISAGRGIGKTTLNAWLV 98 (511)
Q Consensus 77 ~~r~aV~sgrG~GKS~l~a~l~ 98 (511)
.+|+.|....|+|||+++..++
T Consensus 5 ~lKi~viG~~~vGKTsli~~~~ 26 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYC 26 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHH
T ss_conf 5899999989909899999998
No 249
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=62.67 E-value=5.1 Score=17.37 Aligned_cols=21 Identities=29% Similarity=0.537 Sum_probs=18.0
Q ss_pred EEEEEECCCCCCHHHHHHHHH
Q ss_conf 124650257659789999999
Q gi|254781215|r 78 FKGAISAGRGIGKTTLNAWLV 98 (511)
Q Consensus 78 ~r~aV~sgrG~GKS~l~a~l~ 98 (511)
+|+.|....|+|||++...++
T Consensus 4 ~Ki~vvG~~~vGKTsli~~~~ 24 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFV 24 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
T ss_conf 699999989939999999996
No 250
>1sgw_A Putative ABC transporter; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; 1.70A {Pyrococcus furiosus dsm 3638} SCOP: c.37.1.12
Probab=62.61 E-value=3.5 Score=18.39 Aligned_cols=26 Identities=27% Similarity=0.120 Sum_probs=19.7
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 42101246502576597899999999
Q gi|254781215|r 74 NPEVFKGAISAGRGIGKTTLNAWLVL 99 (511)
Q Consensus 74 ~~~~~r~aV~sgrG~GKS~l~a~l~l 99 (511)
.+..--+++....|.|||++...++-
T Consensus 32 i~~Gei~~liG~NGsGKSTLl~~l~g 57 (214)
T 1sgw_A 32 IEKGNVVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp EETTCCEEEECCTTSSHHHHHHHHTT
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHC
T ss_conf 85997999999999839999999966
No 251
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=62.58 E-value=6 Score=16.89 Aligned_cols=52 Identities=17% Similarity=0.076 Sum_probs=30.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHH
Q ss_conf 24650257659789999999999980899669998085899999999999999985
Q gi|254781215|r 79 KGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSL 134 (511)
Q Consensus 79 r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~~Q~~~ilw~Ei~k~~~~ 134 (511)
-+.+....|+|||+.++=|+.|+... .....++++-|++-+- ...++.|.+.
T Consensus 159 vIl~vG~nGvGKTTTiaKLA~~~k~~-g~kv~l~a~DTfRaaA---veQL~~~a~~ 210 (359)
T 2og2_A 159 VIMIVGVNGGGKTTSLGKLAHRLKNE-GTKVLMAAGDTFRAAA---SDQLEIWAER 210 (359)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEEECCCCSCHHH---HHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-CCCCEEEECCCCCHHH---HHHHHHHHHH
T ss_conf 99997888886461799999999966-9986056404232769---9999999864
No 252
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, ATP-binding, cytoplasm, hydrolase, membrane; 2.80A {Schizosaccharomyces pombe}
Probab=62.49 E-value=6 Score=16.88 Aligned_cols=45 Identities=27% Similarity=0.275 Sum_probs=33.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHH-CCCCEEEEEECCHHHHHHHH
Q ss_conf 4650257659789999999999980-89966999808589999999
Q gi|254781215|r 80 GAISAGRGIGKTTLNAWLVLWLMST-RPGISVICLANSETQLKTTL 124 (511)
Q Consensus 80 ~aV~sgrG~GKS~l~a~l~lw~l~~-~p~~kv~vtApt~~Q~~~il 124 (511)
..-.|--|+|||+..|.-++-.... -|....+|.||+..-++.|+
T Consensus 161 migqsqsgtgktaafaltmlsrvdasvpkpqaiclapsrelarqim 206 (508)
T 3fho_A 161 MIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIM 206 (508)
T ss_dssp EEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCHHHHHHHH
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHH
T ss_conf 3064658885159999999986225799974477477399999999
No 253
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION transport, hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D
Probab=62.26 E-value=4 Score=18.01 Aligned_cols=25 Identities=20% Similarity=0.118 Sum_probs=20.3
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 0124650257659789999999999
Q gi|254781215|r 77 VFKGAISAGRGIGKTTLNAWLVLWL 101 (511)
Q Consensus 77 ~~r~aV~sgrG~GKS~l~a~l~lw~ 101 (511)
.-|+.+-+|.|+|||.++..++.+.
T Consensus 147 GQr~~I~gg~GvGKt~L~~~i~r~~ 171 (464)
T 3gqb_B 147 GQKLPIFSGSGLPANEIAAQIARQA 171 (464)
T ss_dssp TCBCCEEEETTSCHHHHHHHHHHHC
T ss_pred CCEEECCCCCCCCHHHHHHHHHHHH
T ss_conf 7560045777864266899998762
No 254
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=62.17 E-value=6.1 Score=16.84 Aligned_cols=55 Identities=13% Similarity=0.102 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHH-CCCCEEEEE
Q ss_conf 999999998740565554210124650257659789999999999980-899669998
Q gi|254781215|r 57 EFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMST-RPGISVICL 113 (511)
Q Consensus 57 e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~-~p~~kv~vt 113 (511)
+-++.|.....+......+ .-+.+.+..|+|||+++..++--...- .++..++.+
T Consensus 27 ~e~~~i~~~l~~~~~~~~~--~~ili~GppGtGKT~l~~~la~~l~~~~~~~~~~i~i 82 (386)
T 2qby_A 27 DQIRKIASILAPLYREEKP--NNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYI 82 (386)
T ss_dssp HHHHHHHHSSGGGGGTCCC--CCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEE
T ss_pred HHHHHHHHHHHHHHHCCCC--CEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 9999999999999847999--8089987998819999999999987524898528996
No 255
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens}
Probab=62.15 E-value=5.3 Score=17.22 Aligned_cols=23 Identities=22% Similarity=0.196 Sum_probs=18.9
Q ss_pred CCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 10124650257659789999999
Q gi|254781215|r 76 EVFKGAISAGRGIGKTTLNAWLV 98 (511)
Q Consensus 76 ~~~r~aV~sgrG~GKS~l~a~l~ 98 (511)
.-+|+.|....|+|||+|+-.++
T Consensus 19 ~~~KI~vvG~~~vGKTsLi~r~~ 41 (184)
T 3ihw_A 19 PELKVGIVGNLSSGKSALVHRYL 41 (184)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
T ss_conf 96799999959987899999998
No 256
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3ikj_A 1vdz_A
Probab=62.13 E-value=6.1 Score=16.84 Aligned_cols=18 Identities=39% Similarity=0.420 Sum_probs=6.4
Q ss_pred EEEECCCCCCHHHHHHHH
Q ss_conf 465025765978999999
Q gi|254781215|r 80 GAISAGRGIGKTTLNAWL 97 (511)
Q Consensus 80 ~aV~sgrG~GKS~l~a~l 97 (511)
..+-+++|+|||.++..+
T Consensus 230 ~~I~g~~g~GKt~l~~~i 247 (588)
T 3mfy_A 230 AAIPGPAGSGKTVTQHQL 247 (588)
T ss_dssp EEECSCCSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
T ss_conf 576568899857999999
No 257
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=61.98 E-value=5.3 Score=17.25 Aligned_cols=22 Identities=32% Similarity=0.383 Sum_probs=19.4
Q ss_pred CEEEEEECCCCCCHHHHHHHHH
Q ss_conf 0124650257659789999999
Q gi|254781215|r 77 VFKGAISAGRGIGKTTLNAWLV 98 (511)
Q Consensus 77 ~~r~aV~sgrG~GKS~l~a~l~ 98 (511)
-+|+.|....|+|||+|+..++
T Consensus 28 ~iKIvvvG~~~vGKTsLi~r~~ 49 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFL 49 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
T ss_conf 7699999999978999999997
No 258
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=61.27 E-value=4.1 Score=17.94 Aligned_cols=25 Identities=24% Similarity=0.157 Sum_probs=19.9
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 2101246502576597899999999
Q gi|254781215|r 75 PEVFKGAISAGRGIGKTTLNAWLVL 99 (511)
Q Consensus 75 ~~~~r~aV~sgrG~GKS~l~a~l~l 99 (511)
+..-+++|...-|.|||+++..++-
T Consensus 33 ~~Ge~iaIvG~sGsGKSTLl~ll~g 57 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 6999999999999829999999977
No 259
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A*
Probab=61.26 E-value=6.2 Score=16.82 Aligned_cols=26 Identities=27% Similarity=0.322 Sum_probs=21.1
Q ss_pred CCCCCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 54210124650257659789999999
Q gi|254781215|r 73 PNPEVFKGAISAGRGIGKTTLNAWLV 98 (511)
Q Consensus 73 ~~~~~~r~aV~sgrG~GKS~l~a~l~ 98 (511)
|--..+|+.|....++|||+++-.++
T Consensus 11 ~~~~~~KI~vvG~~~vGKTSli~r~~ 36 (179)
T 1z0f_A 11 NYSYIFKYIIIGDMGVGKSCLLHQFT 36 (179)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCEEEEEEEECCCCCCHHHHHHHHH
T ss_conf 86756799999999918999999997
No 260
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=61.18 E-value=6 Score=16.90 Aligned_cols=46 Identities=17% Similarity=0.062 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHC----CCCC----CCCCCEEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 99999999998740----5655----5421012465025765978999999999
Q gi|254781215|r 55 QLEFMEVVDAHCLN----SVNN----PNPEVFKGAISAGRGIGKTTLNAWLVLW 100 (511)
Q Consensus 55 Q~e~l~~i~~~~~~----~~~~----~~~~~~r~aV~sgrG~GKS~l~a~l~lw 100 (511)
|-++.+.++...++ -... +.....-+....+-|+|||.++-.++--
T Consensus 20 Qd~A~~~l~~~v~~~~~r~~~~~~~~~~~~p~giLl~GPpG~GKT~lAkalA~~ 73 (310)
T 1ofh_A 20 QADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp CHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 599999999999989987345787767789866999899998888999999887
No 261
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=60.93 E-value=5.7 Score=17.06 Aligned_cols=22 Identities=36% Similarity=0.498 Sum_probs=19.2
Q ss_pred CEEEEEECCCCCCHHHHHHHHH
Q ss_conf 0124650257659789999999
Q gi|254781215|r 77 VFKGAISAGRGIGKTTLNAWLV 98 (511)
Q Consensus 77 ~~r~aV~sgrG~GKS~l~a~l~ 98 (511)
++|+.|....|+|||++...++
T Consensus 8 ~~Ki~viG~~~vGKSsli~~~~ 29 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYV 29 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHH
T ss_conf 7899999989959899999997
No 262
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=60.77 E-value=5.7 Score=17.03 Aligned_cols=21 Identities=29% Similarity=0.569 Sum_probs=18.4
Q ss_pred EEEEEECCCCCCHHHHHHHHH
Q ss_conf 124650257659789999999
Q gi|254781215|r 78 FKGAISAGRGIGKTTLNAWLV 98 (511)
Q Consensus 78 ~r~aV~sgrG~GKS~l~a~l~ 98 (511)
+|++|....|+|||+++..++
T Consensus 22 ~KI~vlG~~~vGKTSLi~~~~ 42 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLI 42 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
T ss_conf 699999999919999999997
No 263
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION transport, hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 1um2_C
Probab=60.63 E-value=6.5 Score=16.67 Aligned_cols=23 Identities=30% Similarity=0.379 Sum_probs=20.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 12465025765978999999999
Q gi|254781215|r 78 FKGAISAGRGIGKTTLNAWLVLW 100 (511)
Q Consensus 78 ~r~aV~sgrG~GKS~l~a~l~lw 100 (511)
=|..+-++.|+|||.+...++.|
T Consensus 222 Qr~~I~g~~g~GKt~ll~~Ia~~ 244 (578)
T 3gqb_A 222 GTAAIPGPFGSGKSVTQQSLAKW 244 (578)
T ss_dssp CEEEECCCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCCCHHHHHHHHH
T ss_conf 75588568888801999998753
No 264
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=60.15 E-value=6.6 Score=16.62 Aligned_cols=23 Identities=22% Similarity=0.289 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 24650257659789999999999
Q gi|254781215|r 79 KGAISAGRGIGKTTLNAWLVLWL 101 (511)
Q Consensus 79 r~aV~sgrG~GKS~l~a~l~lw~ 101 (511)
-+.+.+..|+|||+++..++--.
T Consensus 46 ~lli~GppGtGKT~l~~~l~~~l 68 (387)
T 2v1u_A 46 NALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CEEECBCTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
T ss_conf 36998799880999999999997
No 265
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=60.05 E-value=4.2 Score=17.86 Aligned_cols=23 Identities=30% Similarity=0.222 Sum_probs=18.7
Q ss_pred CCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 10124650257659789999999
Q gi|254781215|r 76 EVFKGAISAGRGIGKTTLNAWLV 98 (511)
Q Consensus 76 ~~~r~aV~sgrG~GKS~l~a~l~ 98 (511)
..-.+++....|.|||+++-.++
T Consensus 30 ~Ge~~~i~G~nGsGKSTLlk~i~ 52 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLL 52 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
T ss_conf 99899998899996999999995
No 266
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=60.04 E-value=6.7 Score=16.61 Aligned_cols=25 Identities=20% Similarity=0.228 Sum_probs=21.0
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 4210124650257659789999999
Q gi|254781215|r 74 NPEVFKGAISAGRGIGKTTLNAWLV 98 (511)
Q Consensus 74 ~~~~~r~aV~sgrG~GKS~l~a~l~ 98 (511)
....+|+.|....++|||+++..++
T Consensus 15 ~~~~iKiviiG~~~vGKTsli~r~~ 39 (194)
T 2atx_A 15 GALMLKCVVVGDGAVGKTCLLMSYA 39 (194)
T ss_dssp EEEEEEEEEEECTTSSHHHHHHHHH
T ss_pred CCEEEEEEEECCCCCCHHHHHHHHH
T ss_conf 8738999999999979999999996
No 267
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=59.28 E-value=6.9 Score=16.52 Aligned_cols=23 Identities=22% Similarity=0.211 Sum_probs=18.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 12465025765978999999999
Q gi|254781215|r 78 FKGAISAGRGIGKTTLNAWLVLW 100 (511)
Q Consensus 78 ~r~aV~sgrG~GKS~l~a~l~lw 100 (511)
=|+.+-+|+|+|||+++.-.++-
T Consensus 176 qr~~I~g~~g~GKt~l~~~~~~~ 198 (515)
T 2r9v_A 176 QRELIIGDRQTGKTAIAIDTIIN 198 (515)
T ss_dssp CBEEEEEETTSSHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
T ss_conf 67888679888867999999886
No 268
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} PDB: 2axp_A*
Probab=59.24 E-value=6.1 Score=16.86 Aligned_cols=23 Identities=22% Similarity=-0.082 Sum_probs=18.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 24650257659789999999999
Q gi|254781215|r 79 KGAISAGRGIGKTTLNAWLVLWL 101 (511)
Q Consensus 79 r~aV~sgrG~GKS~l~a~l~lw~ 101 (511)
-+.|.+.=|+|||+++..|+--+
T Consensus 3 iI~i~G~~GsGKSTva~~La~~L 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99997899999999999999996
No 269
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=58.96 E-value=5.7 Score=17.02 Aligned_cols=25 Identities=24% Similarity=0.106 Sum_probs=21.3
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 0124650257659789999999999
Q gi|254781215|r 77 VFKGAISAGRGIGKTTLNAWLVLWL 101 (511)
Q Consensus 77 ~~r~aV~sgrG~GKS~l~a~l~lw~ 101 (511)
..++.+.++-|+|||+.+..++--+
T Consensus 5 P~~I~i~GppGSGKsT~a~~La~~~ 29 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 8189998999998799999999997
No 270
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=58.69 E-value=6.1 Score=16.85 Aligned_cols=20 Identities=30% Similarity=0.268 Sum_probs=17.7
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 24650257659789999999
Q gi|254781215|r 79 KGAISAGRGIGKTTLNAWLV 98 (511)
Q Consensus 79 r~aV~sgrG~GKS~l~a~l~ 98 (511)
.+++....|.|||+++..++
T Consensus 49 ~vgLvG~NGaGKSTLlkiL~ 68 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILA 68 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHH
T ss_conf 99999999955999999996
No 271
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.73A {Homo sapiens}
Probab=58.57 E-value=6.6 Score=16.64 Aligned_cols=22 Identities=23% Similarity=0.237 Sum_probs=18.4
Q ss_pred CEEEEEECCCCCCHHHHHHHHH
Q ss_conf 0124650257659789999999
Q gi|254781215|r 77 VFKGAISAGRGIGKTTLNAWLV 98 (511)
Q Consensus 77 ~~r~aV~sgrG~GKS~l~a~l~ 98 (511)
.+||.|....|+|||.|+..++
T Consensus 20 ~iKvvivG~~~vGKTSLi~r~~ 41 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYT 41 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
T ss_conf 3189999989989899999997
No 272
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=58.44 E-value=6.8 Score=16.55 Aligned_cols=32 Identities=13% Similarity=0.292 Sum_probs=22.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 4650257659789999999999980899669998
Q gi|254781215|r 80 GAISAGRGIGKTTLNAWLVLWLMSTRPGISVICL 113 (511)
Q Consensus 80 ~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vt 113 (511)
++|+.+-|.|||+++..+.--+-. .+.+++++
T Consensus 8 IgItG~SGSGKTTva~~L~~il~~--~~v~~~vI 39 (290)
T 1a7j_A 8 ISVTGSSGAGTSTVKHTFDQIFRR--EGVKAVSI 39 (290)
T ss_dssp EEEESCC---CCTHHHHHHHHHHH--HTCCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH--CCCCEEEE
T ss_conf 999899978099999999998534--69976999
No 273
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=58.26 E-value=5 Score=17.41 Aligned_cols=26 Identities=31% Similarity=0.289 Sum_probs=20.1
Q ss_pred CCCCCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 54210124650257659789999999
Q gi|254781215|r 73 PNPEVFKGAISAGRGIGKTTLNAWLV 98 (511)
Q Consensus 73 ~~~~~~r~aV~sgrG~GKS~l~a~l~ 98 (511)
..+..-++++...-|.|||+++..++
T Consensus 27 ~i~~Ge~vaIvG~sGsGKSTLl~ll~ 52 (237)
T 2cbz_A 27 SIPEGALVAVVGQVGCGKSSLLSALL 52 (237)
T ss_dssp EECTTCEEEEECSTTSSHHHHHHHHT
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 98599899999999998999999996
No 274
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=58.26 E-value=6.2 Score=16.83 Aligned_cols=24 Identities=13% Similarity=0.093 Sum_probs=20.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 124650257659789999999999
Q gi|254781215|r 78 FKGAISAGRGIGKTTLNAWLVLWL 101 (511)
Q Consensus 78 ~r~aV~sgrG~GKS~l~a~l~lw~ 101 (511)
.|+.+-.+-|+|||++++-|+--+
T Consensus 1 mrI~i~GpPGSGK~T~a~~La~~~ 24 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 989998999998799999999997
No 275
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=58.20 E-value=3.8 Score=18.17 Aligned_cols=22 Identities=32% Similarity=0.546 Sum_probs=18.4
Q ss_pred CCEEEEEECCCCCCHHHHHHHH
Q ss_conf 1012465025765978999999
Q gi|254781215|r 76 EVFKGAISAGRGIGKTTLNAWL 97 (511)
Q Consensus 76 ~~~r~aV~sgrG~GKS~l~a~l 97 (511)
.++|+.|....|+|||+++..+
T Consensus 22 ~~~Ki~viG~~~vGKSsLi~~~ 43 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTF 43 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHT
T ss_pred CEEEEEEECCCCCCHHHHHHHH
T ss_conf 5079999989997999999999
No 276
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=58.14 E-value=6 Score=16.89 Aligned_cols=20 Identities=15% Similarity=0.182 Sum_probs=16.0
Q ss_pred EEECCCCCCHHHHHHHHHHH
Q ss_conf 65025765978999999999
Q gi|254781215|r 81 AISAGRGIGKTTLNAWLVLW 100 (511)
Q Consensus 81 aV~sgrG~GKS~l~a~l~lw 100 (511)
-+...-|+|||+++..|.--
T Consensus 12 ~l~G~~GsGKST~a~~La~~ 31 (175)
T 1knq_A 12 VLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp EEECSTTSCHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHH
T ss_conf 99879999989999999999
No 277
>1um8_A ATP-dependent CLP protease ATP-binding subunit CLPX; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori 26695} SCOP: c.37.1.20
Probab=58.06 E-value=7.2 Score=16.39 Aligned_cols=37 Identities=24% Similarity=0.035 Sum_probs=24.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHH
Q ss_conf 46502576597899999999999808996699980858999
Q gi|254781215|r 80 GAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQL 120 (511)
Q Consensus 80 ~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~~Q~ 120 (511)
+--..+-|+|||.++-.++-. + ...-+.+-|..+.+.
T Consensus 75 iLflGPTGvGKTElAk~LAk~--~--~~~~~~~d~s~~~e~ 111 (376)
T 1um8_A 75 ILLIGPTGSGKTLMAQTLAKH--L--DIPIAISDATSLTEA 111 (376)
T ss_dssp EEEECCTTSSHHHHHHHHHHH--T--TCCEEEEEGGGCC--
T ss_pred EEEECCCCCCHHHHHHHHHHH--C--CCCHHHHHHHCCCCC
T ss_conf 576698977799999999863--5--441355642212556
No 278
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=58.02 E-value=5 Score=17.37 Aligned_cols=24 Identities=25% Similarity=0.232 Sum_probs=19.5
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 101246502576597899999999
Q gi|254781215|r 76 EVFKGAISAGRGIGKTTLNAWLVL 99 (511)
Q Consensus 76 ~~~r~aV~sgrG~GKS~l~a~l~l 99 (511)
..-+++|...-|.|||+++..++-
T Consensus 45 ~Ge~vaIvG~sGsGKSTLl~ll~g 68 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 998999999999879999999947
No 279
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=57.78 E-value=6.7 Score=16.58 Aligned_cols=23 Identities=22% Similarity=0.046 Sum_probs=19.2
Q ss_pred CEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 01246502576597899999999
Q gi|254781215|r 77 VFKGAISAGRGIGKTTLNAWLVL 99 (511)
Q Consensus 77 ~~r~aV~sgrG~GKS~l~a~l~l 99 (511)
-.|+.|....|+|||.|+..++-
T Consensus 25 ~~KIlviG~~~vGKSSLi~r~~~ 47 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSK 47 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
T ss_conf 41899999999789999999971
No 280
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=57.74 E-value=6.8 Score=16.57 Aligned_cols=21 Identities=24% Similarity=0.177 Sum_probs=18.4
Q ss_pred EEEEEECCCCCCHHHHHHHHH
Q ss_conf 124650257659789999999
Q gi|254781215|r 78 FKGAISAGRGIGKTTLNAWLV 98 (511)
Q Consensus 78 ~r~aV~sgrG~GKS~l~a~l~ 98 (511)
+|+.|....|+|||.|+-.++
T Consensus 8 ~KivvvGd~~vGKTsLi~r~~ 28 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFA 28 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
T ss_conf 699999989979999999997
No 281
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=57.38 E-value=7.4 Score=16.32 Aligned_cols=35 Identities=23% Similarity=0.065 Sum_probs=24.9
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 4210124650257659789999999999980899669998
Q gi|254781215|r 74 NPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICL 113 (511)
Q Consensus 74 ~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vt 113 (511)
.+....+.+-++-|+|||+.+..|+-- .+...+.+
T Consensus 12 ~~~~~iI~i~G~pGSGKsT~ak~La~~-----~g~~~i~~ 46 (203)
T 1ukz_A 12 PDQVSVIFVLGGPGAGKGTQCEKLVKD-----YSFVHLSA 46 (203)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHHHH-----SSCEEEEH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH-----HCCCEECH
T ss_conf 999838999899999879999999999-----59926438
No 282
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=57.34 E-value=6.2 Score=16.82 Aligned_cols=28 Identities=25% Similarity=0.259 Sum_probs=19.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 46502576597899999999999808996699
Q gi|254781215|r 80 GAISAGRGIGKTTLNAWLVLWLMSTRPGISVI 111 (511)
Q Consensus 80 ~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~ 111 (511)
+.|...-|+|||+++..|+- ..+++.++
T Consensus 5 I~i~G~pGsGKSTla~~L~~----~~~~~~~i 32 (181)
T 1ly1_A 5 ILTIGCPGSGKSTWAREFIA----KNPGFYNI 32 (181)
T ss_dssp EEEECCTTSSHHHHHHHHHH----HSTTEEEE
T ss_pred EEEECCCCCCHHHHHHHHHH----HCCCCEEE
T ss_conf 99989999998999999998----58998998
No 283
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=57.14 E-value=5.3 Score=17.23 Aligned_cols=24 Identities=25% Similarity=0.199 Sum_probs=19.2
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 101246502576597899999999
Q gi|254781215|r 76 EVFKGAISAGRGIGKTTLNAWLVL 99 (511)
Q Consensus 76 ~~~r~aV~sgrG~GKS~l~a~l~l 99 (511)
..-.+++....|.|||++...++=
T Consensus 33 ~Ge~vaivG~sGsGKSTLl~ll~G 56 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMG 56 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 998999999998839999999957
No 284
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, signaling protein; 2.90A {Chlorobaculum tepidum}
Probab=57.05 E-value=7.5 Score=16.29 Aligned_cols=42 Identities=14% Similarity=0.144 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 999999998740565554210124650257659789999999
Q gi|254781215|r 57 EFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLV 98 (511)
Q Consensus 57 e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~ 98 (511)
..++++..............-.|+.+.+-.|+|||+|+..+.
T Consensus 21 ~y~~~~~~~~~~~~~~~~~~~~Kl~lvG~~~vGKTSLi~~L~ 62 (535)
T 3dpu_A 21 QYFQSIEEARSKGEALVHLQEIKVHLIGDGMAGKTSLLKQLI 62 (535)
T ss_dssp HHHHHHHHHHHTTCCCBCCCEEEEEEESSSCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 999999998753412566788679999928988999999996
No 285
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.40A {Bacillus halodurans c-125} SCOP: c.37.1.25
Probab=57.03 E-value=6.3 Score=16.76 Aligned_cols=29 Identities=24% Similarity=0.121 Sum_probs=20.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 4650257659789999999999980899669998
Q gi|254781215|r 80 GAISAGRGIGKTTLNAWLVLWLMSTRPGISVICL 113 (511)
Q Consensus 80 ~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vt 113 (511)
+.+.+.-|+|||+++..|+-- .+..+++.
T Consensus 5 Iii~G~~GsGKTTla~~La~~-----l~~~~~~~ 33 (189)
T 2bdt_A 5 YIITGPAGVGKSTTCKRLAAQ-----LDNSAYIE 33 (189)
T ss_dssp EEEECSTTSSHHHHHHHHHHH-----SSSEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHH-----CCCCEEEE
T ss_conf 999899998989999999998-----09989986
No 286
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=56.84 E-value=7.4 Score=16.33 Aligned_cols=24 Identities=29% Similarity=0.227 Sum_probs=20.0
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 124650257659789999999999
Q gi|254781215|r 78 FKGAISAGRGIGKTTLNAWLVLWL 101 (511)
Q Consensus 78 ~r~aV~sgrG~GKS~l~a~l~lw~ 101 (511)
..+.|-++-|+|||+.+..|+--+
T Consensus 4 ~~I~i~G~pGsGKsT~a~~Lae~~ 27 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 389998999999899999999985
No 287
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=56.68 E-value=7.4 Score=16.32 Aligned_cols=22 Identities=18% Similarity=0.083 Sum_probs=18.9
Q ss_pred CEEEEEECCCCCCHHHHHHHHH
Q ss_conf 0124650257659789999999
Q gi|254781215|r 77 VFKGAISAGRGIGKTTLNAWLV 98 (511)
Q Consensus 77 ~~r~aV~sgrG~GKS~l~a~l~ 98 (511)
.+|+.|....++|||+|...++
T Consensus 22 ~~kI~ivG~~~~GKTsLi~~l~ 43 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIA 43 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
T ss_conf 3399999999999899999997
No 288
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=56.65 E-value=7.3 Score=16.35 Aligned_cols=28 Identities=21% Similarity=0.249 Sum_probs=23.1
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 4210124650257659789999999999
Q gi|254781215|r 74 NPEVFKGAISAGRGIGKTTLNAWLVLWL 101 (511)
Q Consensus 74 ~~~~~r~aV~sgrG~GKS~l~a~l~lw~ 101 (511)
.|..+|+.+-.+-|.|||+.+..|+--+
T Consensus 13 ~p~~iriii~GpPGSGK~T~a~~La~~~ 40 (233)
T 1ak2_A 13 SPKGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 9987379998999998799999999986
No 289
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics, NPPSFA; HET: GDP; 1.96A {Thermus thermophilus HB8}
Probab=56.58 E-value=7.5 Score=16.29 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=18.7
Q ss_pred CEEEEEECCCCCCHHHHHHHHH
Q ss_conf 0124650257659789999999
Q gi|254781215|r 77 VFKGAISAGRGIGKTTLNAWLV 98 (511)
Q Consensus 77 ~~r~aV~sgrG~GKS~l~a~l~ 98 (511)
|.|+++..--++|||++.-.++
T Consensus 1 M~kI~lvG~~nvGKSsLin~l~ 22 (161)
T 2dyk_A 1 MHKVVIVGRPNVGKSSLFNRLL 22 (161)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCHHHHHHHHHH
T ss_conf 9889998999971999999997
No 290
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=56.52 E-value=6.9 Score=16.52 Aligned_cols=35 Identities=14% Similarity=0.259 Sum_probs=26.1
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 2101246502576597899999999999808996699980
Q gi|254781215|r 75 PEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLA 114 (511)
Q Consensus 75 ~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtA 114 (511)
+.+.|+.+-.+-|+|||+.+..++-- .+...+.+-
T Consensus 5 ~~~m~Iil~GpPGSGK~T~a~~La~~-----~~~~~is~G 39 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTH-----FELKHLSSG 39 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHH-----SSSEEEEHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH-----HCCEEECHH
T ss_conf 23244999899999879999999998-----799788589
No 291
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=56.46 E-value=7.5 Score=16.27 Aligned_cols=23 Identities=30% Similarity=0.352 Sum_probs=19.7
Q ss_pred CCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 10124650257659789999999
Q gi|254781215|r 76 EVFKGAISAGRGIGKTTLNAWLV 98 (511)
Q Consensus 76 ~~~r~aV~sgrG~GKS~l~a~l~ 98 (511)
.+.||++..--++|||+|.-.++
T Consensus 4 ~~ikI~lvG~~nvGKStLin~l~ 26 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALT 26 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
T ss_conf 87289999999998999999995
No 292
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=56.44 E-value=7.7 Score=16.23 Aligned_cols=14 Identities=7% Similarity=-0.033 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHCCC
Q ss_conf 78898888885079
Q gi|254781215|r 205 DVINLGILGFLTER 218 (511)
Q Consensus 205 d~i~e~i~~~Lt~~ 218 (511)
+...+.+..++..+
T Consensus 69 ~~~~~~~~~~l~~~ 82 (332)
T 2wkq_A 69 RATVRKIRDAIDNQ 82 (332)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCC
T ss_conf 99999999999849
No 293
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=56.34 E-value=7.4 Score=16.33 Aligned_cols=22 Identities=23% Similarity=0.143 Sum_probs=18.3
Q ss_pred CEEEEEECCCCCCHHHHHHHHH
Q ss_conf 0124650257659789999999
Q gi|254781215|r 77 VFKGAISAGRGIGKTTLNAWLV 98 (511)
Q Consensus 77 ~~r~aV~sgrG~GKS~l~a~l~ 98 (511)
-+|+.|....|+|||.|+..++
T Consensus 28 ~~KIviiGd~~vGKTsLi~r~~ 49 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFA 49 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
T ss_conf 4799999989978999999997
No 294
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome dynamics; HET: GDP; 2.5A {Homo sapiens}
Probab=56.29 E-value=7.4 Score=16.33 Aligned_cols=22 Identities=27% Similarity=0.299 Sum_probs=18.8
Q ss_pred CEEEEEECCCCCCHHHHHHHHH
Q ss_conf 0124650257659789999999
Q gi|254781215|r 77 VFKGAISAGRGIGKTTLNAWLV 98 (511)
Q Consensus 77 ~~r~aV~sgrG~GKS~l~a~l~ 98 (511)
-+|+.|....|+|||.|+..++
T Consensus 34 ~iKI~vvG~~~vGKTSLi~r~~ 55 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFA 55 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHH
T ss_conf 7899999999978999999996
No 295
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=56.07 E-value=7.3 Score=16.37 Aligned_cols=31 Identities=32% Similarity=0.293 Sum_probs=22.2
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 0124650257659789999999999980899669998
Q gi|254781215|r 77 VFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICL 113 (511)
Q Consensus 77 ~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vt 113 (511)
.+-++|..+=|+|||+++..+.- .+..++..
T Consensus 8 P~iIgItG~~GSGKsTva~~l~~------~g~~~~~~ 38 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRS------WGYPVLDL 38 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH------TTCCEEEH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH------CCCEEEEC
T ss_conf 48999989987769999999998------79939982
No 296
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=56.03 E-value=5.7 Score=17.04 Aligned_cols=27 Identities=22% Similarity=0.127 Sum_probs=20.4
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 421012465025765978999999999
Q gi|254781215|r 74 NPEVFKGAISAGRGIGKTTLNAWLVLW 100 (511)
Q Consensus 74 ~~~~~r~aV~sgrG~GKS~l~a~l~lw 100 (511)
-+..-.+++...-|.|||+++..++=.
T Consensus 25 i~~Ge~vaivG~sGsGKSTLl~ll~gl 51 (243)
T 1mv5_A 25 AQPNSIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp ECTTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 859999999999987399999999678
No 297
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=55.89 E-value=6.4 Score=16.72 Aligned_cols=27 Identities=26% Similarity=0.476 Sum_probs=20.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 465025765978999999999998089966999
Q gi|254781215|r 80 GAISAGRGIGKTTLNAWLVLWLMSTRPGISVIC 112 (511)
Q Consensus 80 ~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~v 112 (511)
++|..|=|+|||+++..+. ..|..++.
T Consensus 5 IgitG~igSGKStv~~~l~------~~G~~vid 31 (206)
T 1jjv_A 5 VGLTGGIGSGKTTIANLFT------DLGVPLVD 31 (206)
T ss_dssp EEEECSTTSCHHHHHHHHH------TTTCCEEE
T ss_pred EEEECCCCCCHHHHHHHHH------HCCCEEEE
T ss_conf 9988998766999999999------88996997
No 298
>1hjr_A Holliday junction resolvase (RUVC); site-specific recombinase; 2.50A {Escherichia coli} SCOP: c.55.3.6
Probab=55.78 E-value=7.9 Score=16.16 Aligned_cols=61 Identities=18% Similarity=0.271 Sum_probs=34.3
Q ss_pred EEEEEECCCCCCCCEEEEEECCCEEEEEE----ECCCCCH----HHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 89996233347841799982275589987----3277898----89999999999861888299800687
Q gi|254781215|r 318 LIMGCDIAEEGGDNTVVVLRRGPVIEHLF----DWSKTDL----RTTNNKISGLVEKYRPDAIIIDANNT 379 (511)
Q Consensus 318 ~viGvDVAr~G~D~svi~~r~G~~v~~~~----~~~~~d~----~~~a~~i~~~~~~~~~~~i~iD~~Gv 379 (511)
+|+|+||+-..--..|+- ..|.....++ .-+..+. ..+...+.++..+|+|+.+.|+..=.
T Consensus 2 iILGiDPgl~~tG~avid-~~~~~~~~i~~g~i~t~~~~~~~Rl~~I~~~l~~ii~~~~pd~vaiE~~f~ 70 (158)
T 1hjr_A 2 IILGIDPGSRVTGYGVIR-QVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQPDYFAIEQVFM 70 (158)
T ss_dssp EEEEEECCSSEEEEEEEE-EETTEEEEEEEEEEECCCSCHHHHHHHHHHHHHHHHHHHCCSEEEEEECCC
T ss_pred EEEEECCCCCCEEEEEEE-EECCEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 899984355856899999-539878999866897799887999999999999999713973536989886
No 299
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=55.77 E-value=7.9 Score=16.16 Aligned_cols=54 Identities=17% Similarity=0.112 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHCC-----CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 999999999987405-----6555421012465025765978999999999998089966999808
Q gi|254781215|r 55 QLEFMEVVDAHCLNS-----VNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLAN 115 (511)
Q Consensus 55 Q~e~l~~i~~~~~~~-----~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtAp 115 (511)
+++.|+++-....+. .+...| ..+-.....|+|||+++-.++-- -+..++.+..
T Consensus 24 ~k~~l~~~i~~l~~~~~~~~~g~~~p--~giLl~GppGtGKT~la~aia~e-----~~~~~~~i~~ 82 (254)
T 1ixz_A 24 AKEELKEIVEFLKNPSRFHEMGARIP--KGVLLVGPPGVGKTHLARAVAGE-----ARVPFITASG 82 (254)
T ss_dssp HHHHHHHHHHHHHCHHHHHHTTCCCC--SEEEEECCTTSSHHHHHHHHHHH-----TTCCEEEEEH
T ss_pred HHHHHHHHHHHHHCHHHHHHCCCCCC--CEEEEECCCCCCCHHHHHHHHHH-----CCCCEEEEEH
T ss_conf 99999999999879999997599988--65787778765627999999976-----3997699886
No 300
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=55.08 E-value=5.6 Score=17.08 Aligned_cols=21 Identities=38% Similarity=0.404 Sum_probs=17.1
Q ss_pred EEEEEECCCCCCHHHHHHHHH
Q ss_conf 124650257659789999999
Q gi|254781215|r 78 FKGAISAGRGIGKTTLNAWLV 98 (511)
Q Consensus 78 ~r~aV~sgrG~GKS~l~a~l~ 98 (511)
--+++....|.|||++...++
T Consensus 35 ei~~liG~nGaGKSTLl~~i~ 55 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFN 55 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCHHHHHHHHHH
T ss_conf 899999999983999999997
No 301
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium, SGPP PSI; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=55.06 E-value=7.3 Score=16.34 Aligned_cols=21 Identities=24% Similarity=0.208 Sum_probs=16.8
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q ss_conf 465025765978999999999
Q gi|254781215|r 80 GAISAGRGIGKTTLNAWLVLW 100 (511)
Q Consensus 80 ~aV~sgrG~GKS~l~a~l~lw 100 (511)
+.+.+.-|+|||+++..|+--
T Consensus 15 Ivl~GpsGsGK~tl~~~L~~~ 35 (204)
T 2qor_A 15 LVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 899999999999999999973
No 302
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=54.74 E-value=8.2 Score=16.05 Aligned_cols=40 Identities=18% Similarity=0.202 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 58999999999998740565554210124650257659789999999
Q gi|254781215|r 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLV 98 (511)
Q Consensus 52 ~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~ 98 (511)
..++.+.|..+...+.+. .++|+|.+.-+.|||+++-.++
T Consensus 51 ~~~~~~~~~~~~~~l~~~-------~~~i~v~G~~saGKStliNall 90 (695)
T 2j69_A 51 LERDIEDITIASKNLQQG-------VFRLLVLGDMKRGKSTFLNALI 90 (695)
T ss_dssp CHHHHHHHHHHHHHHHHC-------CEEEEEECCTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCC-------CCEEEEECCCCCCHHHHHHHHH
T ss_conf 799999999999998459-------9779997289983999999997
No 303
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=54.30 E-value=6.5 Score=16.67 Aligned_cols=23 Identities=26% Similarity=0.237 Sum_probs=18.6
Q ss_pred CEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 01246502576597899999999
Q gi|254781215|r 77 VFKGAISAGRGIGKTTLNAWLVL 99 (511)
Q Consensus 77 ~~r~aV~sgrG~GKS~l~a~l~l 99 (511)
.-++++....|.|||+|+..++-
T Consensus 461 Ge~~gLvG~NGsGKSTLlr~Lag 483 (986)
T 2iw3_A 461 ARRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCHHHHHHHHHHC
T ss_conf 97999999999819999999968
No 304
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=54.21 E-value=6.2 Score=16.80 Aligned_cols=26 Identities=23% Similarity=0.142 Sum_probs=19.9
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 42101246502576597899999999
Q gi|254781215|r 74 NPEVFKGAISAGRGIGKTTLNAWLVL 99 (511)
Q Consensus 74 ~~~~~r~aV~sgrG~GKS~l~a~l~l 99 (511)
.+..-.+++....|.|||+++..++=
T Consensus 61 i~~Ge~vaivG~sGsGKSTLl~li~G 86 (290)
T 2bbs_A 61 IERGQLLAVAGSTGAGKTSLLMMIMG 86 (290)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHTT
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 86999999999999759999999967
No 305
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=54.17 E-value=6.4 Score=16.74 Aligned_cols=21 Identities=38% Similarity=0.224 Sum_probs=18.0
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 246502576597899999999
Q gi|254781215|r 79 KGAISAGRGIGKTTLNAWLVL 99 (511)
Q Consensus 79 r~aV~sgrG~GKS~l~a~l~l 99 (511)
.+++....|.|||++.-.++=
T Consensus 32 ~v~liGpNGaGKSTLlk~i~G 52 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCHHHHHHHHHHC
T ss_conf 999998999849999999965
No 306
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=53.98 E-value=6.5 Score=16.70 Aligned_cols=26 Identities=27% Similarity=0.143 Sum_probs=20.0
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 21012465025765978999999999
Q gi|254781215|r 75 PEVFKGAISAGRGIGKTTLNAWLVLW 100 (511)
Q Consensus 75 ~~~~r~aV~sgrG~GKS~l~a~l~lw 100 (511)
+..-++++...-|.|||+++..++-.
T Consensus 43 ~~Ge~iaIvG~sGsGKSTLl~ll~gl 68 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 59999999999998699999999767
No 307
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=53.85 E-value=8.4 Score=15.97 Aligned_cols=26 Identities=15% Similarity=0.175 Sum_probs=21.5
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 10124650257659789999999999
Q gi|254781215|r 76 EVFKGAISAGRGIGKTTLNAWLVLWL 101 (511)
Q Consensus 76 ~~~r~aV~sgrG~GKS~l~a~l~lw~ 101 (511)
.-.|+.+-.+-|+|||+.+..++--+
T Consensus 7 ~~m~I~i~GppGsGK~T~a~~la~~~ 32 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 76079998999998799999999997
No 308
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C*
Probab=53.80 E-value=6 Score=16.88 Aligned_cols=22 Identities=27% Similarity=0.149 Sum_probs=17.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHH
Q ss_conf 1246502576597899999999
Q gi|254781215|r 78 FKGAISAGRGIGKTTLNAWLVL 99 (511)
Q Consensus 78 ~r~aV~sgrG~GKS~l~a~l~l 99 (511)
--+++....|.|||++...++=
T Consensus 27 ei~~iiGpNGaGKSTLl~~l~G 48 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHC
T ss_conf 8999998999819999999947
No 309
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=53.77 E-value=8.5 Score=15.95 Aligned_cols=21 Identities=24% Similarity=0.521 Sum_probs=18.0
Q ss_pred CEEEEEECCCCCCHHHHHHHH
Q ss_conf 012465025765978999999
Q gi|254781215|r 77 VFKGAISAGRGIGKTTLNAWL 97 (511)
Q Consensus 77 ~~r~aV~sgrG~GKS~l~a~l 97 (511)
.+|+.|...-|+|||+|+..+
T Consensus 37 ~yKIvlvG~~~vGKSsLi~r~ 57 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIF 57 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHH
T ss_conf 489999996998889999999
No 310
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=53.73 E-value=8.5 Score=15.95 Aligned_cols=33 Identities=33% Similarity=0.373 Sum_probs=23.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 12465025765978999999999998089966999808
Q gi|254781215|r 78 FKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLAN 115 (511)
Q Consensus 78 ~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtAp 115 (511)
-|+.+-++.|+|||+++..++.. ....+++.+-
T Consensus 72 Qr~~I~~~~g~GKt~ll~~i~~~-----~~~~~~v~~~ 104 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNG-----ASADIIVLAL 104 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH-----SCCSEEEEEE
T ss_pred CCCCEECCCCCCHHHHHHHHHHH-----HCCCCEEEEE
T ss_conf 85400059998789999877554-----2489548999
No 311
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas}
Probab=53.48 E-value=8.6 Score=15.92 Aligned_cols=23 Identities=22% Similarity=0.030 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 24650257659789999999999
Q gi|254781215|r 79 KGAISAGRGIGKTTLNAWLVLWL 101 (511)
Q Consensus 79 r~aV~sgrG~GKS~l~a~l~lw~ 101 (511)
|+.+-.+.|+|||+.+..++--+
T Consensus 2 rIvi~GpPGSGK~Tqa~~La~~~ 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 79998899998799999999997
No 312
>1m2o_B GTP binding, GTP-binding protein SAR1; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=53.48 E-value=8.5 Score=15.93 Aligned_cols=35 Identities=23% Similarity=0.123 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHH
Q ss_conf 99999999999874056555421012465025765978999999
Q gi|254781215|r 54 WQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWL 97 (511)
Q Consensus 54 WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l 97 (511)
|-..+|+.+..... -.|+.|....++|||++..-+
T Consensus 9 ~~~~~~~~~~~~~k---------~~KI~ivG~~~~GKTsLl~~l 43 (190)
T 1m2o_B 9 WFRDVLASLGLWNK---------HGKLLFLGLDNAGKTTLLHML 43 (190)
T ss_dssp ------------------------CEEEEEESTTSSHHHHHHHH
T ss_pred HHHHHHHHCCCCCC---------CCEEEEECCCCCCHHHHHHHH
T ss_conf 99999985334568---------438999999999989999999
No 313
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=53.48 E-value=7.6 Score=16.24 Aligned_cols=23 Identities=30% Similarity=0.332 Sum_probs=17.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 24650257659789999999999
Q gi|254781215|r 79 KGAISAGRGIGKTTLNAWLVLWL 101 (511)
Q Consensus 79 r~aV~sgrG~GKS~l~a~l~lw~ 101 (511)
++.+....|+|||+++..++--+
T Consensus 4 ~Iil~G~~GsGKSTiak~La~~L 26 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998799998899999999996
No 314
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=53.42 E-value=8.6 Score=15.92 Aligned_cols=34 Identities=15% Similarity=0.169 Sum_probs=22.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 24650257659789999999999980899669998
Q gi|254781215|r 79 KGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICL 113 (511)
Q Consensus 79 r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vt 113 (511)
-+.+.+..|+|||+++-.++-- +-...+.+.+.+
T Consensus 46 ~~li~GppGtGKT~~ar~la~~-l~~~~~~~~~~v 79 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL-YKDKTTARFVYI 79 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH-HTTSCCCEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHHH-HHCCCCCCEEEE
T ss_conf 1799889999699999999998-531258976985
No 315
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=53.38 E-value=7.8 Score=16.17 Aligned_cols=21 Identities=43% Similarity=0.378 Sum_probs=17.3
Q ss_pred EEEEEECCCCCCHHHHHHHHH
Q ss_conf 124650257659789999999
Q gi|254781215|r 78 FKGAISAGRGIGKTTLNAWLV 98 (511)
Q Consensus 78 ~r~aV~sgrG~GKS~l~a~l~ 98 (511)
-.+++....|.|||+++..++
T Consensus 47 ei~~iiG~nGaGKSTL~~~i~ 67 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLA 67 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
T ss_conf 799999999999999999985
No 316
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, non-SMC subunit, ABC-type ATPase, WHD, ATP; HET: ATG; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=53.36 E-value=8.6 Score=15.91 Aligned_cols=21 Identities=38% Similarity=0.428 Sum_probs=16.6
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q ss_conf 465025765978999999999
Q gi|254781215|r 80 GAISAGRGIGKTTLNAWLVLW 100 (511)
Q Consensus 80 ~aV~sgrG~GKS~l~a~l~lw 100 (511)
+.+.+..|.|||+++..+.+.
T Consensus 32 t~I~G~NGsGKStildAI~~~ 52 (483)
T 3euj_A 32 TTLSGGNGAGKSTTMAGFVTA 52 (483)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHH
T ss_conf 899948872299999999999
No 317
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=53.18 E-value=5.3 Score=17.24 Aligned_cols=35 Identities=23% Similarity=0.221 Sum_probs=25.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 4650257659789999999999980899669998085
Q gi|254781215|r 80 GAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANS 116 (511)
Q Consensus 80 ~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtApt 116 (511)
+++....|+|||+|+-.++=+ +...+.+|.+.-..
T Consensus 5 i~ivG~nGsGKTTLl~~l~g~--l~~~~g~V~~~g~~ 39 (171)
T 2f1r_A 5 LSIVGTSDSGKTTLITRMMPI--LRERGLRVAVVKRH 39 (171)
T ss_dssp EEEEESCHHHHHHHHHHHHHH--HHHTTCCEEEEEC-
T ss_pred EEEECCCCCCHHHHHHHHHHH--HCCCCCEEEEEEEC
T ss_conf 999859998899999999710--27799779994112
No 318
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=52.93 E-value=8.7 Score=15.87 Aligned_cols=22 Identities=27% Similarity=0.238 Sum_probs=18.9
Q ss_pred CEEEEEECCCCCCHHHHHHHHH
Q ss_conf 0124650257659789999999
Q gi|254781215|r 77 VFKGAISAGRGIGKTTLNAWLV 98 (511)
Q Consensus 77 ~~r~aV~sgrG~GKS~l~a~l~ 98 (511)
.+|+++..--++|||+|+..++
T Consensus 4 ~~kI~ivG~~nvGKSSLin~l~ 25 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALA 25 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
T ss_conf 6399999989999999999996
No 319
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=52.67 E-value=8.8 Score=15.84 Aligned_cols=33 Identities=27% Similarity=0.226 Sum_probs=24.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 24650257659789999999999980899669998
Q gi|254781215|r 79 KGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICL 113 (511)
Q Consensus 79 r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vt 113 (511)
=+||+.==|+|||+++..|+.-++. -+.||+++
T Consensus 43 iIAVaGKGGVGKTTtsvNLA~aLA~--~GkrVLlI 75 (307)
T 3end_A 43 VFAVYGKGGIGKSTTSSNLSAAFSI--LGKRVLQI 75 (307)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH--TTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH--CCCEEEEE
T ss_conf 9999899875799999999999998--79949998
No 320
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=52.61 E-value=8.8 Score=15.84 Aligned_cols=25 Identities=20% Similarity=0.138 Sum_probs=21.2
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 0124650257659789999999999
Q gi|254781215|r 77 VFKGAISAGRGIGKTTLNAWLVLWL 101 (511)
Q Consensus 77 ~~r~aV~sgrG~GKS~l~a~l~lw~ 101 (511)
..|+.+-.+-|+|||+.+..++--+
T Consensus 4 ~mrI~i~G~PGsGK~T~a~~La~~~ 28 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 2289998999998799999999987
No 321
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=52.58 E-value=8.8 Score=15.83 Aligned_cols=35 Identities=26% Similarity=0.438 Sum_probs=25.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHC-C----CCEEEEEE
Q ss_conf 46502576597899999999999808-9----96699980
Q gi|254781215|r 80 GAISAGRGIGKTTLNAWLVLWLMSTR-P----GISVICLA 114 (511)
Q Consensus 80 ~aV~sgrG~GKS~l~a~l~lw~l~~~-p----~~kv~vtA 114 (511)
+.+...-|+|||+++-.++--...-. | +.+++.+-
T Consensus 46 ~lLVG~pGVGKTalv~~LA~ri~~~~vp~~L~~~~i~~ld 85 (195)
T 1jbk_A 46 PVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALD 85 (195)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEEC
T ss_pred CEEECCCCCCCHHHHHHHHHHHHHCCCCHHHCCCEEEEEE
T ss_conf 1685278767489999999999807999788598689965
No 322
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell cycle, hydrolase, membrane metal-binding, metalloprotease; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=52.45 E-value=8.9 Score=15.82 Aligned_cols=21 Identities=24% Similarity=0.136 Sum_probs=17.4
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 246502576597899999999
Q gi|254781215|r 79 KGAISAGRGIGKTTLNAWLVL 99 (511)
Q Consensus 79 r~aV~sgrG~GKS~l~a~l~l 99 (511)
-+.+....|+|||.++..++-
T Consensus 46 gvLl~GppGtGKT~la~aia~ 66 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHH
T ss_pred EEEEECCCCCCCHHHHHHHHH
T ss_conf 468768999980079999999
No 323
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=52.40 E-value=4.6 Score=17.64 Aligned_cols=27 Identities=22% Similarity=0.097 Sum_probs=20.3
Q ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 542101246502576597899999999
Q gi|254781215|r 73 PNPEVFKGAISAGRGIGKTTLNAWLVL 99 (511)
Q Consensus 73 ~~~~~~r~aV~sgrG~GKS~l~a~l~l 99 (511)
.-+..-.++|...-|.|||+++..++=
T Consensus 76 ~i~~Ge~vaIvG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 76 TVMPGQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp EECTTCEEEEESSSCHHHHHHHHHHTT
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 984999999999999869999999965
No 324
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GDP-binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=52.11 E-value=9 Score=15.79 Aligned_cols=22 Identities=23% Similarity=0.425 Sum_probs=18.9
Q ss_pred CEEEEEECCCCCCHHHHHHHHH
Q ss_conf 0124650257659789999999
Q gi|254781215|r 77 VFKGAISAGRGIGKTTLNAWLV 98 (511)
Q Consensus 77 ~~r~aV~sgrG~GKS~l~a~l~ 98 (511)
..|+.|..-.++|||++...++
T Consensus 18 ~~KI~lvG~~~vGKTSli~r~~ 39 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFM 39 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHH
T ss_conf 0599999969988999999997
No 325
>1l2t_A Hypothetical ABC transporter ATP-binding protein MJ0796; ABC transporters, ATPase, walker-A, NBD, transport protein; HET: ATP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1f3o_A*
Probab=51.93 E-value=6.8 Score=16.57 Aligned_cols=20 Identities=25% Similarity=0.185 Sum_probs=16.1
Q ss_pred EEEEEECCCCCCHHHHHHHH
Q ss_conf 12465025765978999999
Q gi|254781215|r 78 FKGAISAGRGIGKTTLNAWL 97 (511)
Q Consensus 78 ~r~aV~sgrG~GKS~l~a~l 97 (511)
--+++...-|+|||+++..+
T Consensus 32 e~~~ivG~SGsGKSTLl~~i 51 (235)
T 1l2t_A 32 EFVSIMGPSGSGKSTMLNII 51 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
T ss_conf 89999889999899999999
No 326
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=51.88 E-value=9.1 Score=15.76 Aligned_cols=35 Identities=3% Similarity=-0.001 Sum_probs=23.8
Q ss_pred EEECCHHCCCHHHHHHHHHHHCCCCCCEEEEEECC
Q ss_conf 99711102997889888888507998138998238
Q gi|254781215|r 195 IINDEASGTPDVINLGILGFLTERNANRFWIMTSN 229 (511)
Q Consensus 195 vI~DEAsgI~d~i~e~i~~~Lt~~g~~~~~i~~~n 229 (511)
+++||...++...-+.+...+........++++++
T Consensus 80 L~i~ei~~L~~~~Q~~L~~~l~~~~~~~rii~~s~ 114 (145)
T 3n70_A 80 LVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGD 114 (145)
T ss_dssp EEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEES
T ss_pred EEECCHHHCCHHHHHHHHHHHHCCCEEEEEEECCC
T ss_conf 99527465999999999860220524678741245
No 327
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20
Probab=51.81 E-value=9.1 Score=15.76 Aligned_cols=40 Identities=20% Similarity=0.100 Sum_probs=26.9
Q ss_pred EEEEECCHHCCCHHHHHHHHHHHCCCC-------------CCEEEEEECCCCC
Q ss_conf 499971110299788988888850799-------------8138998238998
Q gi|254781215|r 193 MAIINDEASGTPDVINLGILGFLTERN-------------ANRFWIMTSNPRR 232 (511)
Q Consensus 193 ~lvI~DEAsgI~d~i~e~i~~~Lt~~g-------------~~~~~i~~~nP~~ 232 (511)
-++++||..-.+..+-+++...|.++. .+..+++..||-.
T Consensus 146 gvl~lDEi~~~~~~~~~aLle~mee~~v~i~r~g~~~~~P~~~~liaa~Np~~ 198 (350)
T 1g8p_A 146 GYLYIDECNLLEDHIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEE 198 (350)
T ss_dssp EEEEETTGGGSCHHHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCS
T ss_pred CEEEHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCEECCCCCEEEEECCCCCC
T ss_conf 75224556553088999998664168667568872654787669983256777
No 328
>1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} SCOP: c.55.3.8 PDB: 1nmn_A 1ovq_A
Probab=51.63 E-value=9.2 Score=15.74 Aligned_cols=56 Identities=21% Similarity=0.268 Sum_probs=38.4
Q ss_pred EEEEEEECCCCCCCCEEEEEEC--CCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 0899962333478417999822--7558998732778988999999999986188829980
Q gi|254781215|r 317 PLIMGCDIAEEGGDNTVVVLRR--GPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIID 375 (511)
Q Consensus 317 ~~viGvDVAr~G~D~svi~~r~--G~~v~~~~~~~~~d~~~~a~~i~~~~~~~~~~~i~iD 375 (511)
..++|+|++ .-++-+++-+ +.....+..+...+.......+..++.++++..|+|-
T Consensus 3 griLgiD~G---~kriGlAisd~~~~~a~pl~~i~~~~~~~~~~~l~~~i~e~~~~~iVvG 60 (138)
T 1nu0_A 3 GTLMAFDFG---TKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWQPDEIIVG 60 (138)
T ss_dssp CEEEEEECC---SSEEEEEEEETTTTEEEEEEEEEEETTEECHHHHHHHHHHHCCSEEEEE
T ss_pred CCEEEEEEC---CCEEEEEEECCCCCCEECCEEEECCCCHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 768999937---8879999947998843041889827746899999998630487299955
No 329
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural genomics, NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii str}
Probab=51.49 E-value=9.2 Score=15.73 Aligned_cols=33 Identities=21% Similarity=0.175 Sum_probs=23.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 465025765978999999999998089966999808
Q gi|254781215|r 80 GAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLAN 115 (511)
Q Consensus 80 ~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtAp 115 (511)
+++-.+-|+|||+++..|.-++ .....++++.+
T Consensus 7 I~ieG~dGsGKsT~~~~L~~~l---~~~~~~~~~~~ 39 (213)
T 2plr_A 7 IAFEGIDGSGKSSQATLLKDWI---ELKRDVYLTEW 39 (213)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH---TTTSCEEEEET
T ss_pred EEEECCCCCCHHHHHHHHHHHH---HHCCCEEEEEC
T ss_conf 9998998872999999999999---71898899978
No 330
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=51.32 E-value=9.3 Score=15.71 Aligned_cols=42 Identities=14% Similarity=0.191 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 999999998740565554210124650257659789999999
Q gi|254781215|r 57 EFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLV 98 (511)
Q Consensus 57 e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~ 98 (511)
+++..|.+-+.+-.....-...+++|.+....|||++.-.++
T Consensus 6 ~~~~~l~d~l~~~g~~~~~~~P~IvVvG~~s~GKSsliNall 47 (299)
T 2aka_B 6 PLVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFV 47 (299)
T ss_dssp HHHHHHHHHHTTSCCCTTCCCCEEEEEEBTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 999999999996477888888879998799997999999996
No 331
>2yz2_A Putative ABC transporter ATP-binding protein TM_0222; cobalt transport, hydrolase, inner membrane, membrane, nucleotide- binding; 2.30A {Thermotoga maritima MSB8}
Probab=51.30 E-value=7 Score=16.47 Aligned_cols=21 Identities=24% Similarity=0.186 Sum_probs=17.4
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 246502576597899999999
Q gi|254781215|r 79 KGAISAGRGIGKTTLNAWLVL 99 (511)
Q Consensus 79 r~aV~sgrG~GKS~l~a~l~l 99 (511)
-+++....|.|||+++..++=
T Consensus 35 ~~~iiG~nGaGKSTLlk~i~G 55 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999989999999999999965
No 332
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein structure initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=51.26 E-value=8.9 Score=15.83 Aligned_cols=31 Identities=26% Similarity=0.371 Sum_probs=22.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 246502576597899999999999808996699980
Q gi|254781215|r 79 KGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLA 114 (511)
Q Consensus 79 r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtA 114 (511)
=+.+...-|+|||+++..++ ...+..++.+-
T Consensus 11 iI~i~G~~GsGKTT~a~~La-----~~lg~~~~~~~ 41 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIAEALA-----NLPGVPKVHFH 41 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHH-----TCSSSCEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHH-----HHHCCCEEECC
T ss_conf 89998999998899999999-----99699989836
No 333
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding site, hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=51.06 E-value=9.3 Score=15.68 Aligned_cols=23 Identities=26% Similarity=0.234 Sum_probs=18.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 12465025765978999999999
Q gi|254781215|r 78 FKGAISAGRGIGKTTLNAWLVLW 100 (511)
Q Consensus 78 ~r~aV~sgrG~GKS~l~a~l~lw 100 (511)
=|+.+-+|+|+|||+++...++-
T Consensus 164 qr~~I~g~~g~GKt~l~~~~~~~ 186 (507)
T 1fx0_A 164 QRELIIGDRQTGKTAVATDTILN 186 (507)
T ss_dssp CBCBEEESSSSSHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
T ss_conf 67775658888736889987664
No 334
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=51.02 E-value=9.4 Score=15.68 Aligned_cols=33 Identities=21% Similarity=0.292 Sum_probs=23.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 4650257659789999999999980899669998
Q gi|254781215|r 80 GAISAGRGIGKTTLNAWLVLWLMSTRPGISVICL 113 (511)
Q Consensus 80 ~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vt 113 (511)
+-|+.+-|.|||+++..++-..... .+.+++..
T Consensus 28 ilisG~tGSGKTT~l~all~~i~~~-~~~~i~t~ 60 (261)
T 2eyu_A 28 ILVTGPTGSGKSTTIASMIDYINQT-KSYHIITI 60 (261)
T ss_dssp EEEECSTTCSHHHHHHHHHHHHHHH-CCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCC-CCEEEEEE
T ss_conf 9998999963999999999842643-78459996
No 335
>2rex_B RHO-related GTP-binding protein RHO6; complex, structural genomics consortium, SGC, GTPase, GNP, plexin, effector domain, alternative splicing; HET: GNP; 2.30A {Homo sapiens} PDB: 2cls_A*
Probab=50.97 E-value=9.4 Score=15.67 Aligned_cols=21 Identities=24% Similarity=0.167 Sum_probs=18.2
Q ss_pred EEEEEECCCCCCHHHHHHHHH
Q ss_conf 124650257659789999999
Q gi|254781215|r 78 FKGAISAGRGIGKTTLNAWLV 98 (511)
Q Consensus 78 ~r~aV~sgrG~GKS~l~a~l~ 98 (511)
.|+.|....|+|||.++..++
T Consensus 11 ~Ki~vvG~~~vGKTsli~~~~ 31 (197)
T 2rex_B 11 CKLVLVGDVQCGKTAMLQVLA 31 (197)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
T ss_conf 699999999958899999997
No 336
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP- binding, coiled coil, cytoplasm, disease mutation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=50.75 E-value=7.8 Score=16.18 Aligned_cols=20 Identities=45% Similarity=0.420 Sum_probs=16.9
Q ss_pred EEEEEECCCCCCHHHHHHHH
Q ss_conf 12465025765978999999
Q gi|254781215|r 78 FKGAISAGRGIGKTTLNAWL 97 (511)
Q Consensus 78 ~r~aV~sgrG~GKS~l~a~l 97 (511)
+|+.|....|+|||+++..+
T Consensus 3 ~KivivG~~~~GKTsli~~~ 22 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQL 22 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHH
T ss_conf 59999993996889999999
No 337
>2w0m_A SSO2452; RECA, SSPF, unknown function; 2.0A {Sulfolobus solfataricus P2}
Probab=50.48 E-value=9.5 Score=15.63 Aligned_cols=40 Identities=20% Similarity=0.253 Sum_probs=28.0
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 421012465025765978999999999998089966999808
Q gi|254781215|r 74 NPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLAN 115 (511)
Q Consensus 74 ~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtAp 115 (511)
.|...-+.|.+.-|+|||+++..++...+.... ++++...
T Consensus 20 l~~G~~~~i~G~~G~GKT~~~~~~~~~~~~~~~--~~~~~s~ 59 (235)
T 2w0m_A 20 IPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGD--PCIYVTT 59 (235)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHHHHHHHTC--CEEEEES
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHH--CCCCCCC
T ss_conf 889859999958998899999999999877521--3443334
No 338
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA ATG; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=50.25 E-value=9.6 Score=15.60 Aligned_cols=44 Identities=11% Similarity=0.097 Sum_probs=22.6
Q ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCC--CCEEEEEECC
Q ss_conf 5421012465025765978999999999998089--9669998085
Q gi|254781215|r 73 PNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRP--GISVICLANS 116 (511)
Q Consensus 73 ~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p--~~kv~vtApt 116 (511)
++..+.-+.|++..|.|||.+.-.+++-.+..+. ..+.+++=|+
T Consensus 210 dl~k~PHlLIAG~TGSGKSv~l~siI~SLl~~~sP~ev~liLIDpK 255 (574)
T 2iut_A 210 DLAKMPHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPK 255 (574)
T ss_dssp EGGGSCCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSS
T ss_pred EHHHCCEEEEECCCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCC
T ss_conf 0412881899716887561999999999998589546179996366
No 339
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.70A {Thermus thermophilus HB8} PDB: 2d2f_A*
Probab=49.97 E-value=9.6 Score=15.62 Aligned_cols=22 Identities=32% Similarity=0.283 Sum_probs=17.1
Q ss_pred CEEEEEECCCCCCHHHHHHHHH
Q ss_conf 0124650257659789999999
Q gi|254781215|r 77 VFKGAISAGRGIGKTTLNAWLV 98 (511)
Q Consensus 77 ~~r~aV~sgrG~GKS~l~a~l~ 98 (511)
.--+++....|.|||++.-.+.
T Consensus 29 Gei~~liG~nGaGKSTL~~~i~ 50 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILA 50 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
T ss_conf 9799998889989999999985
No 340
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=49.89 E-value=9.8 Score=15.57 Aligned_cols=34 Identities=15% Similarity=0.084 Sum_probs=23.1
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 1012465025765978999999999998089966999
Q gi|254781215|r 76 EVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVIC 112 (511)
Q Consensus 76 ~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~v 112 (511)
..-.+++...-|.|||+++..++= +. .+..+|.+
T Consensus 46 ~Ge~vaivG~sGsGKSTLl~li~G--l~-~~~G~I~i 79 (390)
T 3gd7_A 46 PGQRVGLLGRTGSGKSTLLSAFLR--LL-NTEGEIQI 79 (390)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHT--CS-EEEEEEEE
T ss_pred CCCEEEEECCCCCHHHHHHHHHHC--CC-CCCEEEEE
T ss_conf 998999999999829999999857--88-89749999
No 341
>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*
Probab=49.84 E-value=9.8 Score=15.56 Aligned_cols=18 Identities=6% Similarity=0.108 Sum_probs=10.4
Q ss_pred CEEEEEECCCCCCCCHHH
Q ss_conf 138998238998765567
Q gi|254781215|r 221 NRFWIMTSNPRRLSGKFY 238 (511)
Q Consensus 221 ~~~~i~~~nP~~~~g~fy 238 (511)
+..++...||+|++|..+
T Consensus 183 ~~~~ii~~~p~NPTG~~~ 200 (412)
T 1ajs_A 183 FSIFVLHACAHNPTGTDP 200 (412)
T ss_dssp TCEEEEESSSCTTTCCCC
T ss_pred CCEEEEECCCCCCCCCCC
T ss_conf 858999469999989889
No 342
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=49.76 E-value=7.7 Score=16.23 Aligned_cols=23 Identities=35% Similarity=0.118 Sum_probs=17.8
Q ss_pred CEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 01246502576597899999999
Q gi|254781215|r 77 VFKGAISAGRGIGKTTLNAWLVL 99 (511)
Q Consensus 77 ~~r~aV~sgrG~GKS~l~a~l~l 99 (511)
.-.+++....|.|||++...+.-
T Consensus 47 Ge~~~liGpNGaGKSTLl~~i~G 69 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCHHHHHHHHHHC
T ss_conf 98999999999649999999965
No 343
>3hws_A ATP-dependent CLP protease ATP-binding subunit CLPX; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli k-12} PDB: 3hte_A
Probab=49.75 E-value=9.8 Score=15.55 Aligned_cols=47 Identities=21% Similarity=0.068 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHC----C--CCCC--CCCC-EEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 99999999998740----5--6555--4210-124650257659789999999999
Q gi|254781215|r 55 QLEFMEVVDAHCLN----S--VNNP--NPEV-FKGAISAGRGIGKTTLNAWLVLWL 101 (511)
Q Consensus 55 Q~e~l~~i~~~~~~----~--~~~~--~~~~-~r~aV~sgrG~GKS~l~a~l~lw~ 101 (511)
|.++.+.|+...++ . ...+ .|.. .-+-...+-|+|||.++-.++-..
T Consensus 20 Qd~Ai~~va~al~~~~~r~~~~~~~~~~~~~~~~~Lf~GPTGvGKTelAk~LA~~l 75 (363)
T 3hws_A 20 QEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 39999999999999998874567778876676518998999888999999999986
No 344
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=49.54 E-value=9.9 Score=15.53 Aligned_cols=17 Identities=12% Similarity=0.044 Sum_probs=6.6
Q ss_pred EECCCCCHHHHHHHHHH
Q ss_conf 73277898899999999
Q gi|254781215|r 346 FDWSKTDLRTTNNKISG 362 (511)
Q Consensus 346 ~~~~~~d~~~~a~~i~~ 362 (511)
-+....+......++.+
T Consensus 226 sTlHa~s~~~~i~Rl~~ 242 (356)
T 3jvv_A 226 GTLHTTSAAKTIDRVVD 242 (356)
T ss_dssp EEESCSSHHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHHH
T ss_conf 98677998999999986
No 345
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=49.53 E-value=9.8 Score=15.56 Aligned_cols=22 Identities=32% Similarity=0.240 Sum_probs=17.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHH
Q ss_conf 4650257659789999999999
Q gi|254781215|r 80 GAISAGRGIGKTTLNAWLVLWL 101 (511)
Q Consensus 80 ~aV~sgrG~GKS~l~a~l~lw~ 101 (511)
+.+-...|+|||+++..++--+
T Consensus 5 Ivl~G~~GsGKSTv~~~LA~~l 26 (173)
T 1e6c_A 5 IFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998899998899999999996
No 346
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=49.18 E-value=10 Score=15.50 Aligned_cols=29 Identities=17% Similarity=0.094 Sum_probs=21.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 24650257659789999999999980899
Q gi|254781215|r 79 KGAISAGRGIGKTTLNAWLVLWLMSTRPG 107 (511)
Q Consensus 79 r~aV~sgrG~GKS~l~a~l~lw~l~~~p~ 107 (511)
-+.+.++-|+|||+++..|.-.+-..+..
T Consensus 5 iI~i~G~~GsGKTT~~~~L~~~l~~~~~~ 33 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSSQLAMDNLRKEGVN 33 (192)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTTTCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 89998999959899999999998765997
No 347
>2rhm_A Putative kinase; ZP_00765535.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 1.70A {Chloroflexus aurantiacus j-10-fl}
Probab=49.15 E-value=9.8 Score=15.55 Aligned_cols=23 Identities=30% Similarity=0.205 Sum_probs=18.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 24650257659789999999999
Q gi|254781215|r 79 KGAISAGRGIGKTTLNAWLVLWL 101 (511)
Q Consensus 79 r~aV~sgrG~GKS~l~a~l~lw~ 101 (511)
-+.+...-|+|||+++..++-.+
T Consensus 7 ~I~i~G~~GsGKTTla~~La~~~ 29 (193)
T 2rhm_A 7 LIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998689999799999999996
No 348
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, X-RAY diffraction, structural genomics, NPPSFA; HET: ADP; 2.00A {Pyrococcus horikoshii OT3}
Probab=49.12 E-value=10 Score=15.49 Aligned_cols=44 Identities=18% Similarity=0.129 Sum_probs=27.8
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHH
Q ss_conf 01246502576597899999999999808996699980858999
Q gi|254781215|r 77 VFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQL 120 (511)
Q Consensus 77 ~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~~Q~ 120 (511)
..-+-|.+.-|+|||.++.-++.-.+......-.+.+-.+..++
T Consensus 23 G~~~~i~G~~GsGKT~l~l~l~~~~~~~~~~v~~is~e~~~~~~ 66 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEHPVQV 66 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSCHHHH
T ss_pred CEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCHHHH
T ss_conf 83999997899889999999999998749987103566799999
No 349
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=48.55 E-value=9.6 Score=15.61 Aligned_cols=21 Identities=24% Similarity=0.159 Sum_probs=17.1
Q ss_pred EEEEEECCCCCCHHHHHHHHH
Q ss_conf 124650257659789999999
Q gi|254781215|r 78 FKGAISAGRGIGKTTLNAWLV 98 (511)
Q Consensus 78 ~r~aV~sgrG~GKS~l~a~l~ 98 (511)
--+++...-|+|||+++..+.
T Consensus 33 ei~~ivG~sGsGKSTLl~~i~ 53 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCIN 53 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCHHHHHHHHHH
T ss_conf 899999799975999999997
No 350
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=48.27 E-value=10 Score=15.41 Aligned_cols=40 Identities=25% Similarity=0.225 Sum_probs=26.4
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 2101246502576597899999999999808996699980
Q gi|254781215|r 75 PEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLA 114 (511)
Q Consensus 75 ~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtA 114 (511)
+...-+.+.+.-|+|||.++..++.-.+.......++++.
T Consensus 28 ~~g~~~~i~G~~G~GKT~l~~~~~~~~~~~~~~~v~~~s~ 67 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEECC
T ss_conf 7985999997899998999999999999964997124247
No 351
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural genomics, joint center for structural genomics, JCSG; 2.10A {Thermotoga maritima MSB8} SCOP: c.37.1.12
Probab=48.19 E-value=8.4 Score=15.98 Aligned_cols=20 Identities=25% Similarity=0.154 Sum_probs=16.6
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 24650257659789999999
Q gi|254781215|r 79 KGAISAGRGIGKTTLNAWLV 98 (511)
Q Consensus 79 r~aV~sgrG~GKS~l~a~l~ 98 (511)
-+++....|.|||++...++
T Consensus 43 i~gllGpNGaGKSTLlk~i~ 62 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIIS 62 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99998999988999999996
No 352
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=48.13 E-value=10 Score=15.40 Aligned_cols=23 Identities=35% Similarity=0.143 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 24650257659789999999999
Q gi|254781215|r 79 KGAISAGRGIGKTTLNAWLVLWL 101 (511)
Q Consensus 79 r~aV~sgrG~GKS~l~a~l~lw~ 101 (511)
-+.+.++-|+|||+++..|+-.+
T Consensus 14 iI~l~G~pGSGKsT~a~~La~~~ 36 (199)
T 2bwj_A 14 IIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998999999899999999986
No 353
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=47.86 E-value=7.1 Score=16.44 Aligned_cols=21 Identities=29% Similarity=0.088 Sum_probs=16.8
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 246502576597899999999
Q gi|254781215|r 79 KGAISAGRGIGKTTLNAWLVL 99 (511)
Q Consensus 79 r~aV~sgrG~GKS~l~a~l~l 99 (511)
-|.+...-|+|||+++..|.-
T Consensus 7 iI~i~G~sGsGKSTva~~La~ 27 (183)
T 2vli_A 7 IIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp EEEEECCC----CHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999988349999999999
No 354
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=47.69 E-value=10 Score=15.41 Aligned_cols=28 Identities=36% Similarity=0.446 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 2465025765978999999999998089966999
Q gi|254781215|r 79 KGAISAGRGIGKTTLNAWLVLWLMSTRPGISVIC 112 (511)
Q Consensus 79 r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~v 112 (511)
=++|..|=|.|||+++..+. ..|..++-
T Consensus 6 IIgItG~igSGKStva~~l~------~~G~~vid 33 (218)
T 1vht_A 6 IVALTGGIGSGKSTVANAFA------DLGINVID 33 (218)
T ss_dssp EEEEECCTTSCHHHHHHHHH------HTTCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHH------HCCCCEEE
T ss_conf 99987988787999999999------87991998
No 355
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi}
Probab=47.62 E-value=11 Score=15.35 Aligned_cols=21 Identities=33% Similarity=0.297 Sum_probs=17.9
Q ss_pred EEEEEECCCCCCHHHHHHHHH
Q ss_conf 124650257659789999999
Q gi|254781215|r 78 FKGAISAGRGIGKTTLNAWLV 98 (511)
Q Consensus 78 ~r~aV~sgrG~GKS~l~a~l~ 98 (511)
-.+++....|.|||+++..++
T Consensus 118 E~vgLvG~NGsGKSTLlkiL~ 138 (607)
T 3bk7_A 118 MVVGIVGPNGTGKTTAVKILA 138 (607)
T ss_dssp SEEEEECCTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCHHHHHHHHHH
T ss_conf 999999899986999999996
No 356
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=47.42 E-value=11 Score=15.33 Aligned_cols=46 Identities=13% Similarity=-0.121 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHCCCC---CCCCCCEEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 99999999998740565---55421012465025765978999999999
Q gi|254781215|r 55 QLEFMEVVDAHCLNSVN---NPNPEVFKGAISAGRGIGKTTLNAWLVLW 100 (511)
Q Consensus 55 Q~e~l~~i~~~~~~~~~---~~~~~~~r~aV~sgrG~GKS~l~a~l~lw 100 (511)
|++.|+++.+...+... ...+...-+-+....|+|||+++..++--
T Consensus 20 ~k~~l~e~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~aia~e 68 (257)
T 1lv7_A 20 AKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp HHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999999999987999999759999974675689998877999999987
No 357
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), structural genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=47.32 E-value=11 Score=15.32 Aligned_cols=32 Identities=19% Similarity=0.242 Sum_probs=23.9
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 21012465025765978999999999998089966999
Q gi|254781215|r 75 PEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVIC 112 (511)
Q Consensus 75 ~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~v 112 (511)
+.+.=+.+..|=|+|||+++..+.- -|..++-
T Consensus 73 ~~~~IIGLTGgigSGKStva~~L~~------~G~~vid 104 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLKN------LGAYIID 104 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHHH------HTCEEEE
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH------CCCCEEE
T ss_conf 9998999878875219999999998------7996998
No 358
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=47.25 E-value=11 Score=15.31 Aligned_cols=89 Identities=11% Similarity=-0.004 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHC---CCCC---CCCCCEEEEEECCCCCCHHHHHHH
Q ss_conf 6665288667764214557775655578458999999999998740---5655---542101246502576597899999
Q gi|254781215|r 23 EIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLN---SVNN---PNPEVFKGAISAGRGIGKTTLNAW 96 (511)
Q Consensus 23 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~P~~WQ~e~l~~i~~~~~~---~~~~---~~~~~~r~aV~sgrG~GKS~l~a~ 96 (511)
++...+++-++-... + .......-| +..+.+.+.+.+.+ .... ......-+.+....|+|||+.+|=
T Consensus 47 ~vv~~~i~~ik~~~~-~---~~v~~~~~~---~~~i~kiv~~eL~~llg~~~~~~~~~~~p~vi~~vG~~G~GKTTT~aK 119 (443)
T 3dm5_A 47 RLVLQLTREIQRRAL-E---EKPPAGISK---KEHIIKIVYEELTKFLGTEAKPIEIKEKPTILLMVGIQGSGKTTTVAK 119 (443)
T ss_dssp HHHHHHHHHHHHHHH-H---CCCCTTCCH---HHHHHHHHHHHHHHHTTSSCCCCCCCSSSEEEEEECCTTSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-C---CCCCCCCCH---HHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHH
T ss_conf 999999999999981-6---766666885---999999999999987354322233478982899966788972327999
Q ss_pred HHHHHHHHCCCCEEEEEECCHHH
Q ss_conf 99999980899669998085899
Q gi|254781215|r 97 LVLWLMSTRPGISVICLANSETQ 119 (511)
Q Consensus 97 l~lw~l~~~p~~kv~vtApt~~Q 119 (511)
++.|+. ..-....++++-|++-
T Consensus 120 LA~~~~-~~g~kv~lva~Dt~R~ 141 (443)
T 3dm5_A 120 LARYFQ-KRGYKVGVVCSDTWRP 141 (443)
T ss_dssp HHHHHH-TTTCCEEEEECCCSST
T ss_pred HHHHHH-HCCCCEEEEECCCCCH
T ss_conf 999999-7699424653145576
No 359
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=47.23 E-value=11 Score=15.31 Aligned_cols=21 Identities=29% Similarity=0.221 Sum_probs=17.6
Q ss_pred EEEEEECCCCCCHHHHHHHHH
Q ss_conf 124650257659789999999
Q gi|254781215|r 78 FKGAISAGRGIGKTTLNAWLV 98 (511)
Q Consensus 78 ~r~aV~sgrG~GKS~l~a~l~ 98 (511)
.+|++....++|||++...+.
T Consensus 49 p~V~ivG~~n~GKTSLl~~l~ 69 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLT 69 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
T ss_conf 689999999999899999995
No 360
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, cytoplasm, metal-binding, nucleotide biosynthesis, nucleotide-binding; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=47.09 E-value=11 Score=15.30 Aligned_cols=23 Identities=22% Similarity=0.107 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 24650257659789999999999
Q gi|254781215|r 79 KGAISAGRGIGKTTLNAWLVLWL 101 (511)
Q Consensus 79 r~aV~sgrG~GKS~l~a~l~lw~ 101 (511)
|+.+-.+-|+|||+.+..++--+
T Consensus 2 ~I~i~GpPGsGK~T~a~~La~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 79998999998699999999997
No 361
>3l0i_B RAS-related protein RAB-1A; GEF/GDF-RAB complex, GTP-binding, guanine-nucleotide exchange factor, GDI-displacement factor; 2.85A {Homo sapiens}
Probab=47.09 E-value=3.5 Score=18.36 Aligned_cols=22 Identities=27% Similarity=0.351 Sum_probs=19.1
Q ss_pred CCCEEEEEECCCCCCHHHHHHH
Q ss_conf 2101246502576597899999
Q gi|254781215|r 75 PEVFKGAISAGRGIGKTTLNAW 96 (511)
Q Consensus 75 ~~~~r~aV~sgrG~GKS~l~a~ 96 (511)
...+|+.|....|+|||+++-.
T Consensus 31 ~~~~KI~vlG~~~vGKTSLi~r 52 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLR 52 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTS
T ss_pred CEEEEEEEECCCCCCHHHHHHH
T ss_conf 7798999999899598999999
No 362
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=46.96 E-value=11 Score=15.28 Aligned_cols=43 Identities=9% Similarity=0.093 Sum_probs=26.5
Q ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCC--CEEEEEEC
Q ss_conf 54210124650257659789999999999980899--66999808
Q gi|254781215|r 73 PNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPG--ISVICLAN 115 (511)
Q Consensus 73 ~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~--~kv~vtAp 115 (511)
++..+.-.-|+...|.|||.+.-.+++-.+..+++ .+.+.+=|
T Consensus 163 Dl~~~PHlLIAG~TGSGKSv~l~siI~SLl~~~~P~ev~liLiDp 207 (512)
T 2ius_A 163 DLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDP 207 (512)
T ss_dssp EGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECC
T ss_pred EHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECC
T ss_conf 675588758862678856499999999999857975737999548
No 363
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=46.71 E-value=11 Score=15.26 Aligned_cols=33 Identities=21% Similarity=0.219 Sum_probs=23.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 12465025765978999999999998089966999808
Q gi|254781215|r 78 FKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLAN 115 (511)
Q Consensus 78 ~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtAp 115 (511)
..+-..+..|+|||.++..++-- .+..++....
T Consensus 45 ~giLL~GppGtGKT~la~aia~~-----~~~~~~~~~~ 77 (274)
T 2x8a_A 45 AGVLLAGPPGCGKTLLAKAVANE-----SGLNFISVKG 77 (274)
T ss_dssp SEEEEESSTTSCHHHHHHHHHHH-----TTCEEEEEET
T ss_pred CEEEEECCCCCCHHHHHHHHHHH-----HCCCEEEEEH
T ss_conf 72688789998862899999998-----2787189764
No 364
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, shikimate pathway, nucleotide-binding, amino-acid biosynthesis; 2.10A {Aquifex aeolicus VF5}
Probab=46.50 E-value=11 Score=15.24 Aligned_cols=23 Identities=22% Similarity=0.070 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 24650257659789999999999
Q gi|254781215|r 79 KGAISAGRGIGKTTLNAWLVLWL 101 (511)
Q Consensus 79 r~aV~sgrG~GKS~l~a~l~lw~ 101 (511)
++.+...-|+|||+++..++--+
T Consensus 2 ~I~l~G~~GsGKSTvg~~La~~L 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998999998899999999995
No 365
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, endosome, nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=46.44 E-value=11 Score=15.23 Aligned_cols=32 Identities=13% Similarity=0.041 Sum_probs=22.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 1246502576597899999999999808996699980
Q gi|254781215|r 78 FKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLA 114 (511)
Q Consensus 78 ~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtA 114 (511)
..+-+..+.|+|||+++-.++--. +..++.+.
T Consensus 85 ~giLL~GPpGtGKT~la~aiA~e~-----~~~~~~v~ 116 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATEA-----NSTFFSVS 116 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHH-----TCEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHC-----CCCCEECC
T ss_conf 626887999998899999999860-----89961300
No 366
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=46.09 E-value=9.5 Score=15.65 Aligned_cols=21 Identities=24% Similarity=0.145 Sum_probs=16.7
Q ss_pred EEEEEECCCCCCHHHHHHHHH
Q ss_conf 124650257659789999999
Q gi|254781215|r 78 FKGAISAGRGIGKTTLNAWLV 98 (511)
Q Consensus 78 ~r~aV~sgrG~GKS~l~a~l~ 98 (511)
=-+++....|.|||+++..++
T Consensus 51 ei~~iiG~sGsGKSTLl~~i~ 71 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLN 71 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHH
T ss_conf 799998899998999977871
No 367
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A
Probab=46.03 E-value=11 Score=15.19 Aligned_cols=140 Identities=14% Similarity=0.026 Sum_probs=63.8
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH-HHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCHHCCCCCCCCCCCCCCCCCC
Q ss_conf 01246502576597899999999999-80899669998085899999999999999985500013444322222233344
Q gi|254781215|r 77 VFKGAISAGRGIGKTTLNAWLVLWLM-STRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYS 155 (511)
Q Consensus 77 ~~r~aV~sgrG~GKS~l~a~l~lw~l-~~~p~~kv~vtApt~~Q~~~ilw~Ei~k~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (511)
.+-++|.+--+.|||+|+-.++...- +.+.+ .|---........|-.=-|..+-+. ....... ..|..
T Consensus 13 iRNiaiigHvd~GKTTL~e~lL~~~g~i~~~G-~v~~~~~~~~~~~D~~~~E~eRgiT---------I~s~~~~-~~~~~ 81 (529)
T 2h5e_A 13 RRTFAIISHPDAGKTTITEKVLLFGQAIQTAG-TVKGRGSNQHAKSDWMEMEKQRGIS---------ITTSVMQ-FPYHD 81 (529)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC-----------------------------------------CCTTEEE-EEETT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCCCCC-EEEECCCCCCEECCCCHHHHHCCCE---------EEECEEE-EEECC
T ss_conf 66799996899899999999997577100050-3420356674301672889975971---------8624599-98799
Q ss_pred CCCCCCCCCCCCEEEEEECCCCCCCCCHHHHCCCCCCEEEEECCHHCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCC
Q ss_conf 43211123578616985303575561002120267614999711102997889888888507998138998238998765
Q gi|254781215|r 156 DVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSG 235 (511)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~s~~~~ea~~G~h~~~~~lvI~DEAsgI~d~i~e~i~~~Lt~~g~~~~~i~~~nP~~~~g 235 (511)
. ..-++.......-..|...+++.--..++|+|-..||-...-.+++-+... +-+. ++.+-+=.+..-
T Consensus 82 --~--------~iNlIDTPGh~DF~~Ev~~al~~~DgavlVVDa~~Gv~~qT~~v~~~~~~~-~lp~-i~~INK~Dr~~~ 149 (529)
T 2h5e_A 82 --C--------LVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLR-DTPI-LTFMNKLDRDIR 149 (529)
T ss_dssp --E--------EEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTT-TCCE-EEEEECTTSCCS
T ss_pred --E--------EEEEEECCCCHHHHHHHHHHHHHHCEEEEEEECCCCCCCCHHHHHHHHHHC-CCCE-EEEEEEECCCCC
T ss_conf --8--------999996988288899999999863536999646887423318888777751-7870-754443146788
Q ss_pred HHHH
Q ss_conf 5676
Q gi|254781215|r 236 KFYE 239 (511)
Q Consensus 236 ~fy~ 239 (511)
.|.+
T Consensus 150 d~~~ 153 (529)
T 2h5e_A 150 DPME 153 (529)
T ss_dssp CHHH
T ss_pred CHHH
T ss_conf 8899
No 368
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=45.77 E-value=11 Score=15.17 Aligned_cols=52 Identities=15% Similarity=0.284 Sum_probs=28.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHH
Q ss_conf 75655578458999999999998740565554210124650257659789999999999980
Q gi|254781215|r 43 TPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMST 104 (511)
Q Consensus 43 ~~~~~~~~P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~ 104 (511)
+.+....|= +.|+-+-+..-.++.+. -+...+.-|+|||+++-.++.-...-
T Consensus 183 g~l~p~igR---e~ei~~~~~iL~r~~k~-------N~iLVGe~GVGKTaivegLA~ri~~~ 234 (758)
T 1r6b_X 183 GGIDPLIGR---EKELERAIQVLCRRRKN-------NPLLVGESGVGKTAIAEGLAWRIVQG 234 (758)
T ss_dssp TCSCCCCSC---HHHHHHHHHHHTSSSSC-------EEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCC---HHHHHHHHHHHHCCCCC-------CCEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 899864442---49999999997346888-------84575477634689999999999854
No 369
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein LOLD; structural genomics, NPPSFA; 1.70A {Aquifex aeolicus VF5} PDB: 2pcl_A
Probab=45.67 E-value=9.7 Score=15.59 Aligned_cols=33 Identities=30% Similarity=0.180 Sum_probs=21.0
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHCCC-CEEEE
Q ss_conf 0124650257659789999999999980899-66999
Q gi|254781215|r 77 VFKGAISAGRGIGKTTLNAWLVLWLMSTRPG-ISVIC 112 (511)
Q Consensus 77 ~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~-~kv~v 112 (511)
.-.+++...-|+|||++.-.+ -.+. .|. ..+.+
T Consensus 30 Ge~~~iiGpsGsGKSTLl~~i--~gl~-~p~sG~I~~ 63 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYIL--GLLD-APTEGKVFL 63 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHH--TTSS-CCSEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHH--HHCC-CCCCCEEEE
T ss_conf 989999999998499999999--7178-999967999
No 370
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=45.54 E-value=11 Score=15.15 Aligned_cols=36 Identities=33% Similarity=0.245 Sum_probs=27.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 24650257659789999999999980899669998085
Q gi|254781215|r 79 KGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANS 116 (511)
Q Consensus 79 r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtApt 116 (511)
=++|.+-.|+|||+|+..++-.+.- .+-+|.++-.+
T Consensus 8 ii~ivG~~~SGKTTLi~~li~~L~~--~G~~V~~IKh~ 43 (174)
T 1np6_A 8 LLAFAAWSGTGKTTLLKKLIPALCA--RGIRPGLIKHT 43 (174)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHH--TTCCEEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH--CCCEEEEEEEC
T ss_conf 7999906999899999999999997--79828899745
No 371
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=45.52 E-value=11 Score=15.14 Aligned_cols=21 Identities=14% Similarity=0.150 Sum_probs=15.8
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 246502576597899999999
Q gi|254781215|r 79 KGAISAGRGIGKTTLNAWLVL 99 (511)
Q Consensus 79 r~aV~sgrG~GKS~l~a~l~l 99 (511)
-+++....|+|||++.-.++=
T Consensus 26 ~~~iiGpsGsGKSTllr~i~G 46 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCHHHHHHHHHHC
T ss_conf 999997999819999999972
No 372
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography, ATP-binding; 2.15A {Ehrlichia chaffeensis}
Probab=45.40 E-value=11 Score=15.13 Aligned_cols=36 Identities=22% Similarity=0.087 Sum_probs=28.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 246502576597899999999999808996699980
Q gi|254781215|r 79 KGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLA 114 (511)
Q Consensus 79 r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtA 114 (511)
=+++-+.=|+|||+++..|.-++-......+++.+.
T Consensus 23 fIviEG~dGsGKTT~~~~L~e~L~~~~~~~~v~~~~ 58 (223)
T 3ld9_A 23 FITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTR 58 (223)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 999889978869999999999999717997299855
No 373
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=44.89 E-value=12 Score=15.08 Aligned_cols=23 Identities=17% Similarity=0.075 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 24650257659789999999999
Q gi|254781215|r 79 KGAISAGRGIGKTTLNAWLVLWL 101 (511)
Q Consensus 79 r~aV~sgrG~GKS~l~a~l~lw~ 101 (511)
|+.+-.+-|+|||+.+..++=-+
T Consensus 2 ~I~i~GpPGsGK~T~a~~la~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 79998999998799999999997
No 374
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=44.88 E-value=9.7 Score=15.58 Aligned_cols=20 Identities=20% Similarity=0.149 Sum_probs=17.4
Q ss_pred EEEEEECCCCCCHHHHHHHH
Q ss_conf 12465025765978999999
Q gi|254781215|r 78 FKGAISAGRGIGKTTLNAWL 97 (511)
Q Consensus 78 ~r~aV~sgrG~GKS~l~a~l 97 (511)
.|+.|..-.++|||+++..+
T Consensus 23 ~ki~ivG~~~vGKTsLi~~l 42 (189)
T 2x77_A 23 IRVLMLGLDNAGKTSILYRL 42 (189)
T ss_dssp EEEEEEEETTSSHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHH
T ss_conf 89999999998889999999
No 375
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=44.80 E-value=12 Score=15.07 Aligned_cols=66 Identities=17% Similarity=0.194 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999874056555421012465025765978999999999998089966999808589999999999999998
Q gi|254781215|r 55 QLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLS 133 (511)
Q Consensus 55 Q~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~~Q~~~ilw~Ei~k~~~ 133 (511)
|-++++.+.+.+.++.. .+.|..-.|.+|+.++|.++.- .+..++|++|+..+|.. +..+|.-++.
T Consensus 17 q~~ai~~l~~~l~~g~~-------~~~l~Gl~gsa~a~~~a~l~~~-----~~~p~lvVt~~~~~A~~-l~~dL~~~~~ 82 (661)
T 2d7d_A 17 QPKAIEKLVKGIQEGKK-------HQTLLGATGTGKTFTVSNLIKE-----VNKPTLVIAHNKTLAGQ-LYSEFKEFFP 82 (661)
T ss_dssp HHHHHHHHHHHHHTTCS-------EEEEEECTTSCHHHHHHHHHHH-----HCCCEEEECSSHHHHHH-HHHHHHHHCT
T ss_pred CHHHHHHHHHHHHCCCC-------CEEEECCCCCHHHHHHHHHHHH-----HCCCEEEEECCHHHHHH-HHHHHHHHCC
T ss_conf 89999999999966998-------6898688863899999999997-----39999999089999999-9999997669
No 376
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=44.73 E-value=12 Score=15.07 Aligned_cols=30 Identities=27% Similarity=0.133 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 24650257659789999999999980899669998
Q gi|254781215|r 79 KGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICL 113 (511)
Q Consensus 79 r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vt 113 (511)
-+-..++-|+|||+++..++-.. +.+++.+
T Consensus 171 ~iL~~GPPGtGKT~lA~alA~~l-----~~~~i~i 200 (377)
T 1svm_A 171 YWLFKGPIDSGKTTLAAALLELC-----GGKALNV 200 (377)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH-----CCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHC-----CCCEEEE
T ss_conf 59998999998899999999985-----9988999
No 377
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, acetylation, ATP-binding, cytoplasm, lipid-binding, nucleotide-binding; HET: ADP; 3.00A {Mus musculus}
Probab=44.72 E-value=12 Score=15.07 Aligned_cols=33 Identities=18% Similarity=0.033 Sum_probs=24.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 12465025765978999999999998089966999808
Q gi|254781215|r 78 FKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLAN 115 (511)
Q Consensus 78 ~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtAp 115 (511)
.-+-+.++.|+|||+++-.++-- -+..++.+..
T Consensus 50 ~gvLl~GppGtGKT~la~aia~~-----~~~~~~~i~~ 82 (301)
T 3cf0_A 50 KGVLFYGPPGCGKTLLAKAIANE-----CQANFISIKG 82 (301)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHH-----TTCEEEEECH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH-----HCCCEEEEEH
T ss_conf 63788799999889999999999-----4997699887
No 378
>2it2_A UPF0130 protein PH1069; hypothetical protein, NPPSFA, national project on protein structural and functional analyses; 1.50A {Pyrococcus horikoshii} PDB: 2drv_A 2it3_A
Probab=44.55 E-value=12 Score=15.05 Aligned_cols=17 Identities=18% Similarity=0.237 Sum_probs=6.9
Q ss_pred EEEEEECCCEEEEEEEC
Q ss_conf 79998227558998732
Q gi|254781215|r 332 TVVVLRRGPVIEHLFDW 348 (511)
Q Consensus 332 svi~~r~G~~v~~~~~~ 348 (511)
.++++|.+.++......
T Consensus 143 ~iVaIrs~~~le~Pl~~ 159 (200)
T 2it2_A 143 LIVEIRSTERMDVLLGE 159 (200)
T ss_dssp CEEEEECSCCEEEEEEE
T ss_pred EEEEEECCCCEEEEEEE
T ss_conf 79999337854357632
No 379
>3ga2_A Endonuclease V; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Bacillus subtilis}
Probab=44.53 E-value=12 Score=15.05 Aligned_cols=80 Identities=16% Similarity=0.150 Sum_probs=41.2
Q ss_pred EEEEEEECCCCCCCC-----EEEEEEC--CCEEEEE-EE-----C---CC----CCHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 089996233347841-----7999822--7558998-73-----2---77----89889999999999861888299800
Q gi|254781215|r 317 PLIMGCDIAEEGGDN-----TVVVLRR--GPVIEHL-FD-----W---SK----TDLRTTNNKISGLVEKYRPDAIIIDA 376 (511)
Q Consensus 317 ~~viGvDVAr~G~D~-----svi~~r~--G~~v~~~-~~-----~---~~----~d~~~~a~~i~~~~~~~~~~~i~iD~ 376 (511)
.++.|+|++..+++. +++++.. ...+.+. .. + +| .....+...+..+ +.+|+-++||+
T Consensus 40 ~~VaGvDvsy~~~~~~~~~~a~~Vvl~~~~~~~v~~~~~~~~~~~PYIPG~LaFRE~p~ll~al~~L--~~~PDvllvDG 117 (246)
T 3ga2_A 40 NTTAGVDLAYWEQDGEPYGVCCIIVIDADTKEVIEKVHSMGRISVPYVSGFLAFRELPLIIEAAKKL--ETEPDVFLFDG 117 (246)
T ss_dssp SEEEEEEEEEEEETTEEEEEEEEEEEETTTCCEEEEEEEEEECCCCSSSSCGGGGTHHHHHHHHHHC--SSCCSCEEEEB
T ss_pred CEEEEEEEEEECCCCCEEEEEEEEEEECCCCCEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC--CCCCCEEEECC
T ss_conf 6899998666548886489999999977987189999999623688365236562179999999856--78999999928
Q ss_pred CCC----CHHHHHHH-HHCCCEEEEEC
Q ss_conf 687----63688989-86498279842
Q gi|254781215|r 377 NNT----GARTCDYL-EMLGYHVYRVL 398 (511)
Q Consensus 377 ~Gv----G~gV~d~L-~~~g~~v~~v~ 398 (511)
.|+ |.|+..-+ ...+.+.++|-
T Consensus 118 ~Gi~HPR~~GlA~HlGv~l~~PtIGVA 144 (246)
T 3ga2_A 118 NGYLHYNHMGVATHAAFFLGKPTIGIA 144 (246)
T ss_dssp CSSSSTTSCCHHHHHHHHHTSCEEEEE
T ss_pred CCCCCCCCCCHHHHEEEECCCCEEEEE
T ss_conf 621068776453310000398876441
No 380
>2dou_A Probable N-succinyldiaminopimelate aminotransferase; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus HB8}
Probab=43.60 E-value=12 Score=14.96 Aligned_cols=66 Identities=15% Similarity=0.037 Sum_probs=35.4
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHH
Q ss_conf 458999999999998740565554210124650257659789999999999980899669998085899999
Q gi|254781215|r 51 PRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKT 122 (511)
Q Consensus 51 P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~~Q~~~ 122 (511)
|..=-.++.++|+.+..+..+.+... ....|.++ |-+. +..++-.+++.++..|++..|++.....
T Consensus 61 ~~~G~~~lr~aia~~~~~~~~~~~~~-~~~~i~~~---G~~~--al~~~~~~l~~~gd~Vl~~~P~y~~~~~ 126 (376)
T 2dou_A 61 LKSCTLPFLEEAARWYEGRYGVGLDP-RREALALI---GSQE--GLAHLLLALTEPEDLLLLPEVAYPSYFG 126 (376)
T ss_dssp CHHHHHHHHHHHHHHHHHHHSCCCCT-TTSEEEES---SHHH--HHHHHHHHHCCTTCEEEEESSCCHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCC-CCEEEECC---CHHH--HHHHHHHHHCCCCCEEEECCCCCHHHHH
T ss_conf 98789999999999999974999991-32899758---5899--9999999936899989977764312333
No 381
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=43.50 E-value=12 Score=14.95 Aligned_cols=20 Identities=20% Similarity=0.129 Sum_probs=17.1
Q ss_pred EEEEEECCCCCCHHHHHHHH
Q ss_conf 12465025765978999999
Q gi|254781215|r 78 FKGAISAGRGIGKTTLNAWL 97 (511)
Q Consensus 78 ~r~aV~sgrG~GKS~l~a~l 97 (511)
.|+.+....|+|||++...+
T Consensus 19 ~kI~ivG~~~~GKSSLl~~l 38 (186)
T 1ksh_A 19 LRLLMLGLDNAGKTTILKKF 38 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHH
T ss_conf 49999999999989999999
No 382
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A*
Probab=43.49 E-value=12 Score=14.95 Aligned_cols=33 Identities=18% Similarity=0.310 Sum_probs=24.8
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 10124650257659789999999999980899669998
Q gi|254781215|r 76 EVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICL 113 (511)
Q Consensus 76 ~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vt 113 (511)
.++|+.+-.+-|+||++.+..++--+ +...+.+
T Consensus 26 ~~~riii~GpPGSGKgTqa~~La~~~-----g~~hIs~ 58 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNF-----GLQHLSS 58 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH-----CCCCEEH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH-----CCEEECH
T ss_conf 31449998999998799999999997-----9878738
No 383
>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, lyase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*
Probab=43.12 E-value=12 Score=14.91 Aligned_cols=26 Identities=12% Similarity=0.026 Sum_probs=17.7
Q ss_pred HHHHHHHHHCCCCEEEEEECCHHHHH
Q ss_conf 99999998089966999808589999
Q gi|254781215|r 96 WLVLWLMSTRPGISVICLANSETQLK 121 (511)
Q Consensus 96 ~l~lw~l~~~p~~kv~vtApt~~Q~~ 121 (511)
..++..+++.|+..|++..|++....
T Consensus 104 l~~~~~~l~~~gd~Vl~~~p~~~~y~ 129 (422)
T 3fvs_A 104 LFTAFQALVDEGDEVIIIEPFFDCYE 129 (422)
T ss_dssp HHHHHHHHCCTTCEEEEEESCCTTHH
T ss_pred HHHHHHHHCCCCCEEEECCCCCHHHH
T ss_conf 99999983479897750555662389
No 384
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=42.98 E-value=11 Score=15.16 Aligned_cols=21 Identities=29% Similarity=0.202 Sum_probs=16.8
Q ss_pred EEEEEECCCCCCHHHHHHHHH
Q ss_conf 124650257659789999999
Q gi|254781215|r 78 FKGAISAGRGIGKTTLNAWLV 98 (511)
Q Consensus 78 ~r~aV~sgrG~GKS~l~a~l~ 98 (511)
--+++....|.|||+++..+.
T Consensus 34 ei~gliGpnGaGKSTL~~~i~ 54 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVIT 54 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHH
T ss_conf 799999999986999999997
No 385
>1nn5_A Similar to deoxythymidylate kinase (thymidylate kinase); P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=42.91 E-value=12 Score=14.89 Aligned_cols=34 Identities=18% Similarity=0.092 Sum_probs=25.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 4650257659789999999999980899669998
Q gi|254781215|r 80 GAISAGRGIGKTTLNAWLVLWLMSTRPGISVICL 113 (511)
Q Consensus 80 ~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vt 113 (511)
+++-..=|+|||+++..|.-++-.......++..
T Consensus 12 I~ieG~dGsGKST~~~~L~~~L~~~g~~~~~~~~ 45 (215)
T 1nn5_A 12 IVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRF 45 (215)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 9998998888999999999999867996699864
No 386
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=42.84 E-value=9.9 Score=15.52 Aligned_cols=34 Identities=21% Similarity=0.143 Sum_probs=23.2
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 012465025765978999999999998089966999808
Q gi|254781215|r 77 VFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLAN 115 (511)
Q Consensus 77 ~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtAp 115 (511)
.+.++|.++=|+|||+++..|.-+ -+..+++.-|
T Consensus 20 p~~I~IeG~~GsGKST~~~~L~~~-----l~~~~~~~ep 53 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTTYLNHFEKY-----KNDICLLTEP 53 (230)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGG-----TTTEEEECCT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH-----CCCCEEEECC
T ss_conf 639998899987689999999986-----5896699687
No 387
>2rgx_A Adenylate kinase; transferase(phosphotransferase), ATP-binding, cytoplasm, nucleotide-binding; HET: AP5; 1.90A {Aquifex aeolicus} PDB: 2rh5_A
Probab=42.71 E-value=13 Score=14.87 Aligned_cols=23 Identities=22% Similarity=-0.009 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 24650257659789999999999
Q gi|254781215|r 79 KGAISAGRGIGKTTLNAWLVLWL 101 (511)
Q Consensus 79 r~aV~sgrG~GKS~l~a~l~lw~ 101 (511)
.+.+-++-|+|||+.+..++--+
T Consensus 2 ~I~i~GppGSGKsT~a~~La~~~ 24 (206)
T 2rgx_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998999998799999999997
No 388
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=42.63 E-value=13 Score=14.86 Aligned_cols=35 Identities=11% Similarity=-0.167 Sum_probs=23.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCH
Q ss_conf 46502576597899999999999808996699980858
Q gi|254781215|r 80 GAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSE 117 (511)
Q Consensus 80 ~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~ 117 (511)
+++.+.=|+|||+++..|.-++- .. ...++.-|..
T Consensus 7 I~ieG~dGsGKtT~~~~L~~~l~--~~-~~~~~~~p~~ 41 (204)
T 2v54_A 7 IVFEGLDKSGKTTQCMNIMESIP--AN-TIKYLNFPQR 41 (204)
T ss_dssp EEEECCTTSSHHHHHHHHHHTSC--GG-GEEEEESSCT
T ss_pred EEEECCCCCCHHHHHHHHHHHHH--HC-CCEEEEECCC
T ss_conf 99989988859999999999984--68-9989998999
No 389
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 2zzy_A
Probab=42.54 E-value=13 Score=14.85 Aligned_cols=21 Identities=38% Similarity=0.256 Sum_probs=16.7
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q ss_conf 465025765978999999999
Q gi|254781215|r 80 GAISAGRGIGKTTLNAWLVLW 100 (511)
Q Consensus 80 ~aV~sgrG~GKS~l~a~l~lw 100 (511)
+.+.++-|+|||+++..|+--
T Consensus 4 Ivl~GpsGsGK~Tl~~~L~~~ 24 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999899999989999999974
No 390
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=42.39 E-value=13 Score=14.84 Aligned_cols=40 Identities=10% Similarity=-0.037 Sum_probs=30.7
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 42101246502576597899999999999808996699980
Q gi|254781215|r 74 NPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLA 114 (511)
Q Consensus 74 ~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtA 114 (511)
.|.. ++.+...-|+|||+++-.++.-++...++..++++-
T Consensus 26 ip~G-~~~i~G~~~sGKTtlaL~~~a~~~~q~~g~~v~yiD 65 (333)
T 3io5_A 26 MQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYD 65 (333)
T ss_dssp BCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred CCCC-EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 1784-499988998879999999999999858993899997
No 391
>1ii8_A RAD50 ABC-ATPase; MRE11, DNA double-strand break repair, replication; 3.02A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=42.29 E-value=13 Score=14.83 Aligned_cols=24 Identities=21% Similarity=0.151 Sum_probs=16.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 46502576597899999999999808
Q gi|254781215|r 80 GAISAGRGIGKTTLNAWLVLWLMSTR 105 (511)
Q Consensus 80 ~aV~sgrG~GKS~l~a~l~lw~l~~~ 105 (511)
+.+.+..|+|||++...+ .++++.
T Consensus 26 ~~i~G~NGsGKStil~Ai--~~~L~g 49 (195)
T 1ii8_A 26 NLIIGQNGSGKSSLLDAI--LVGLYW 49 (195)
T ss_dssp EEEECCTTSSHHHHHHHH--HHHHHT
T ss_pred EEEECCCCCCCCCHHHHH--HHHCCC
T ss_conf 899888999820087746--776048
No 392
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, cell cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=42.15 E-value=13 Score=14.82 Aligned_cols=21 Identities=33% Similarity=0.453 Sum_probs=18.3
Q ss_pred EEEEEECCCCCCHHHHHHHHH
Q ss_conf 124650257659789999999
Q gi|254781215|r 78 FKGAISAGRGIGKTTLNAWLV 98 (511)
Q Consensus 78 ~r~aV~sgrG~GKS~l~a~l~ 98 (511)
+.+.|.+..|+|||+++-.|+
T Consensus 19 fnIlVvG~~g~GKSTliN~L~ 39 (301)
T 2qnr_A 19 FTLMVVGESGLGKSTLINSLF 39 (301)
T ss_dssp EEEEEEEETTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
T ss_conf 499998799791999999986
No 393
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=41.65 E-value=13 Score=14.77 Aligned_cols=34 Identities=18% Similarity=-0.022 Sum_probs=24.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 465025765978999999999998089966999808
Q gi|254781215|r 80 GAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLAN 115 (511)
Q Consensus 80 ~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtAp 115 (511)
+.|++.-|.|||+++..+++-.+ ..+.+|++...
T Consensus 71 ~vi~g~pg~GKT~~~l~l~~~~~--~~g~~vl~~Sl 104 (315)
T 3bh0_A 71 VLIAARPSMGKTAFALKQAKNMS--DNDDVVNLHSL 104 (315)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHH--TTTCEEEEEES
T ss_pred EEEEECCCCCHHHHHHHHHHHHH--CCCCEEEEEEC
T ss_conf 99995799999999999999874--16982999847
No 394
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=41.58 E-value=13 Score=14.76 Aligned_cols=25 Identities=20% Similarity=0.128 Sum_probs=19.1
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 2101246502576597899999999
Q gi|254781215|r 75 PEVFKGAISAGRGIGKTTLNAWLVL 99 (511)
Q Consensus 75 ~~~~r~aV~sgrG~GKS~l~a~l~l 99 (511)
+..-.++|...-|.|||+++..++=
T Consensus 414 ~~G~~vaivG~sGsGKSTLl~ll~g 438 (1284)
T 3g5u_A 414 KSGQTVALVGNSGCGKSTTVQLMQR 438 (1284)
T ss_dssp CTTCEEEEECCSSSSHHHHHHHTTT
T ss_pred ECCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 3780899989998656799998742
No 395
>3hkw_A NS5B RNA-dependent RNA polymerase; HCV polymerase, 1,5-benzodiazepine, transferase; HET: IX6; 1.55A {Hepatitis c virus subtype 1A} PDB: 2xi3_A* 2xi2_A* 3e51_A* 3bsa_A* 3bsc_A* 3br9_A* 3co9_A* 3cvk_A* 3cwj_A* 3d28_A* 3d5m_A* 3cde_A* 3gyn_A* 3h2l_A* 3igv_A* 2ax0_A* 2awz_A* 2ax1_A* 1os5_A* 2jc1_A* ...
Probab=41.53 E-value=9.9 Score=15.54 Aligned_cols=22 Identities=14% Similarity=0.043 Sum_probs=13.1
Q ss_pred CCCHHHHHHHHHHHHHHHHCCC
Q ss_conf 7845899999999999874056
Q gi|254781215|r 49 SAPRSWQLEFMEVVDAHCLNSV 70 (511)
Q Consensus 49 ~~P~~WQ~e~l~~i~~~~~~~~ 70 (511)
+-||+--.++|+++-.--.+.+
T Consensus 61 qv~d~hy~~v~~~~k~~As~v~ 82 (581)
T 3hkw_A 61 QVLDSHYQDVLKEVKAAASKVK 82 (581)
T ss_dssp CCCCHHHHHHHHHHHHHHTTCB
T ss_pred CCCCHHHHHHHHHHHHHHHHCC
T ss_conf 5755889999999998875156
No 396
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=41.30 E-value=13 Score=14.74 Aligned_cols=21 Identities=24% Similarity=0.355 Sum_probs=17.9
Q ss_pred EEEEEECCCCCCHHHHHHHHH
Q ss_conf 124650257659789999999
Q gi|254781215|r 78 FKGAISAGRGIGKTTLNAWLV 98 (511)
Q Consensus 78 ~r~aV~sgrG~GKS~l~a~l~ 98 (511)
.+|++.+-.++|||+|...++
T Consensus 4 ~~V~lvG~~~~GKSsLi~~L~ 24 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALT 24 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
T ss_conf 199999899998999999997
No 397
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell membrane, GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A*
Probab=41.29 E-value=13 Score=14.73 Aligned_cols=21 Identities=29% Similarity=0.230 Sum_probs=17.9
Q ss_pred EEEEEECCCCCCHHHHHHHHH
Q ss_conf 124650257659789999999
Q gi|254781215|r 78 FKGAISAGRGIGKTTLNAWLV 98 (511)
Q Consensus 78 ~r~aV~sgrG~GKS~l~a~l~ 98 (511)
++|++.+--++|||+|+..+.
T Consensus 4 l~I~lvG~~nvGKSTLin~L~ 24 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLT 24 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
T ss_conf 889999899997999999996
No 398
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=41.27 E-value=12 Score=14.89 Aligned_cols=20 Identities=25% Similarity=0.238 Sum_probs=15.7
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 24650257659789999999
Q gi|254781215|r 79 KGAISAGRGIGKTTLNAWLV 98 (511)
Q Consensus 79 r~aV~sgrG~GKS~l~a~l~ 98 (511)
-+++....|.|||++.-.+.
T Consensus 34 i~~liGpNGaGKSTll~~i~ 53 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIA 53 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999999984999999997
No 399
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=41.19 E-value=13 Score=14.72 Aligned_cols=21 Identities=29% Similarity=0.131 Sum_probs=18.1
Q ss_pred EEEEEECCCCCCHHHHHHHHH
Q ss_conf 124650257659789999999
Q gi|254781215|r 78 FKGAISAGRGIGKTTLNAWLV 98 (511)
Q Consensus 78 ~r~aV~sgrG~GKS~l~a~l~ 98 (511)
.|+.|..--|+|||+|.-.++
T Consensus 22 ~KI~lvG~~~vGKTsLi~~l~ 42 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFS 42 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
T ss_conf 799999999999899999997
No 400
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PSI-2, protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=41.05 E-value=13 Score=14.71 Aligned_cols=23 Identities=22% Similarity=0.042 Sum_probs=17.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 46502576597899999999999
Q gi|254781215|r 80 GAISAGRGIGKTTLNAWLVLWLM 102 (511)
Q Consensus 80 ~aV~sgrG~GKS~l~a~l~lw~l 102 (511)
+.+...-|+|||+++..++...-
T Consensus 8 ~Ll~G~PGtGKT~~a~~la~~l~ 30 (199)
T 2r2a_A 8 CLITGTPGSGKTLKMVSMMANDE 30 (199)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCG
T ss_pred EEEECCCCCHHHHHHHHHHHHHC
T ss_conf 99989999709999999999968
No 401
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=41.01 E-value=13 Score=14.71 Aligned_cols=21 Identities=24% Similarity=0.077 Sum_probs=17.5
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 246502576597899999999
Q gi|254781215|r 79 KGAISAGRGIGKTTLNAWLVL 99 (511)
Q Consensus 79 r~aV~sgrG~GKS~l~a~l~l 99 (511)
.+++...-|.|||+++..++-
T Consensus 39 ~~~llGpsGsGKSTll~~iaG 59 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAG 59 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCHHHHHHHHHHC
T ss_conf 999999999859999999974
No 402
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* 2a5g_A* 2w83_A*
Probab=40.92 E-value=13 Score=14.70 Aligned_cols=21 Identities=24% Similarity=0.110 Sum_probs=17.7
Q ss_pred EEEEEECCCCCCHHHHHHHHH
Q ss_conf 124650257659789999999
Q gi|254781215|r 78 FKGAISAGRGIGKTTLNAWLV 98 (511)
Q Consensus 78 ~r~aV~sgrG~GKS~l~a~l~ 98 (511)
+|+.+..-.++|||+|...++
T Consensus 1 lKi~ivG~~~vGKTsLi~~~~ 21 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLK 21 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
T ss_conf 989999999988899999996
No 403
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=40.83 E-value=13 Score=14.69 Aligned_cols=27 Identities=26% Similarity=0.255 Sum_probs=21.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 465025765978999999999998089
Q gi|254781215|r 80 GAISAGRGIGKTTLNAWLVLWLMSTRP 106 (511)
Q Consensus 80 ~aV~sgrG~GKS~l~a~l~lw~l~~~p 106 (511)
+.|.+.-|+|||+++..|.-++-....
T Consensus 4 ivi~G~~GsGKsT~~~~L~~~l~~~~~ 30 (194)
T 1nks_A 4 GIVTGIPGVGKSTVLAKVKEILDNQGI 30 (194)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHTTTC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 999899997989999999999987599
No 404
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleotide binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=40.78 E-value=13 Score=14.68 Aligned_cols=21 Identities=19% Similarity=0.191 Sum_probs=15.9
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q ss_conf 465025765978999999999
Q gi|254781215|r 80 GAISAGRGIGKTTLNAWLVLW 100 (511)
Q Consensus 80 ~aV~sgrG~GKS~l~a~l~lw 100 (511)
|.+.+.-|+|||+++..|+--
T Consensus 6 I~l~G~~GsGKsTvA~~La~~ 26 (178)
T 1qhx_A 6 IILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999899999989999999998
No 405
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class member, structural genomics; 2.20A {Eubacterium ventriosum atcc 27560}
Probab=40.47 E-value=14 Score=14.65 Aligned_cols=22 Identities=23% Similarity=0.071 Sum_probs=18.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHH
Q ss_conf 4650257659789999999999
Q gi|254781215|r 80 GAISAGRGIGKTTLNAWLVLWL 101 (511)
Q Consensus 80 ~aV~sgrG~GKS~l~a~l~lw~ 101 (511)
+++...-|+|||+++..|+--+
T Consensus 9 I~I~g~~GsGKstiak~LA~~L 30 (201)
T 3fdi_A 9 IAIGREFGSGGHLVAKKLAEHY 30 (201)
T ss_dssp EEEEECTTSSHHHHHHHHHHHT
T ss_pred EEECCCCCCCHHHHHHHHHHHH
T ss_conf 9866999998699999999995
No 406
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=40.28 E-value=9.6 Score=15.61 Aligned_cols=35 Identities=23% Similarity=0.149 Sum_probs=26.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHH
Q ss_conf 2465025765978999999999998089966999808589
Q gi|254781215|r 79 KGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSET 118 (511)
Q Consensus 79 r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~~ 118 (511)
-+.....=|.|||+++..++--+ +.+--|++||+.
T Consensus 35 ii~L~G~LGaGKTtf~r~i~~~l-----g~~~~V~SPTF~ 69 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI-----GHQGNVKSPTYT 69 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT-----TCCSCCCCCTTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH-----CCCCCCCCCCEE
T ss_conf 99998898688999999999982-----766667898334
No 407
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=40.23 E-value=13 Score=14.85 Aligned_cols=32 Identities=25% Similarity=0.112 Sum_probs=22.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCH
Q ss_conf 1246502576597899999999999808996699980858
Q gi|254781215|r 78 FKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSE 117 (511)
Q Consensus 78 ~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~ 117 (511)
.|+.+....|+|||++...+ -+.......+|.
T Consensus 19 ~Ki~lvG~~~vGKTsLi~~l--------~~~~~~~~~~t~ 50 (183)
T 1moz_A 19 LRILILGLDGAGKTTILYRL--------QIGEVVTTKPTI 50 (183)
T ss_dssp EEEEEEEETTSSHHHHHHHT--------CCSEEEEECSST
T ss_pred EEEEEECCCCCCHHHHHHHH--------HCCCCCCCCCCC
T ss_conf 89999999999889999798--------459867754652
No 408
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=40.13 E-value=14 Score=14.62 Aligned_cols=22 Identities=32% Similarity=0.113 Sum_probs=17.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHH
Q ss_conf 4650257659789999999999
Q gi|254781215|r 80 GAISAGRGIGKTTLNAWLVLWL 101 (511)
Q Consensus 80 ~aV~sgrG~GKS~l~a~l~lw~ 101 (511)
+.+....|+|||+++..++-.+
T Consensus 7 Iil~G~~GsGKtTi~k~La~~l 28 (175)
T 1via_A 7 IVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998689998999999999995
No 409
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=40.09 E-value=14 Score=14.62 Aligned_cols=22 Identities=32% Similarity=0.377 Sum_probs=17.9
Q ss_pred CEEEEEECCCCCCHHHHHHHHH
Q ss_conf 0124650257659789999999
Q gi|254781215|r 77 VFKGAISAGRGIGKTTLNAWLV 98 (511)
Q Consensus 77 ~~r~aV~sgrG~GKS~l~a~l~ 98 (511)
.+.+.|.+..|+|||+++-.++
T Consensus 42 ~~~ILvvG~tGsGKST~iNsL~ 63 (427)
T 2qag_B 42 CFNILCVGETGLGKSTLMDTLF 63 (427)
T ss_dssp EEEEEEECSTTSSSHHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHH
T ss_conf 5799998899997999999984
No 410
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=39.89 E-value=14 Score=14.60 Aligned_cols=89 Identities=18% Similarity=0.122 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC----CCCC-CCCCEEEEEECCCCCCHHHHHHH
Q ss_conf 066652886677642145577756555784589999999999987405----6555-42101246502576597899999
Q gi|254781215|r 22 DEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNS----VNNP-NPEVFKGAISAGRGIGKTTLNAW 96 (511)
Q Consensus 22 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~P~~WQ~e~l~~i~~~~~~~----~~~~-~~~~~r~aV~sgrG~GKS~l~a~ 96 (511)
..+...+++-++--.. +.......-|.+. ++..+.+.+.+. ...+ .....-+.+..-.|+|||+.+|=
T Consensus 45 ~~vv~~ii~~ik~~~~----~~~~~~~~~~~~~---i~~~v~eeL~~~l~~~~~~~~~~~p~VIl~vG~~G~GKTTT~aK 117 (425)
T 2ffh_A 45 LEVTRDFVERVREEAL----GKQVLESLTPAEV---ILATVYEALKEALGGEARLPVLKDRNLWFLVGLQGSGKTTTAAK 117 (425)
T ss_dssp HHHHHHHHHHHHHHHH----TTTGGGCSCHHHH---HHHHHHHHHHHHTTSSCCCCCCCSSEEEEEECCTTSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHC----CCCCCCCCCHHHH---HHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHH
T ss_conf 9999999999999970----6645664798999---99999999985005543454568973899966788761008999
Q ss_pred HHHHHHHHCCCCEEEEEECCHH
Q ss_conf 9999998089966999808589
Q gi|254781215|r 97 LVLWLMSTRPGISVICLANSET 118 (511)
Q Consensus 97 l~lw~l~~~p~~kv~vtApt~~ 118 (511)
++.|+.. .-....++++-|++
T Consensus 118 LA~~~~~-~g~kv~lva~Dt~R 138 (425)
T 2ffh_A 118 LALYYKG-KGRRPLLVAADTQR 138 (425)
T ss_dssp HHHHHHT-TTCCEEEEECCSSC
T ss_pred HHHHHHH-CCCEEEEEECCCCC
T ss_conf 9999986-39836898435567
No 411
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=39.71 E-value=14 Score=14.58 Aligned_cols=19 Identities=26% Similarity=0.361 Sum_probs=15.2
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 4650257659789999999
Q gi|254781215|r 80 GAISAGRGIGKTTLNAWLV 98 (511)
Q Consensus 80 ~aV~sgrG~GKS~l~a~l~ 98 (511)
..|.+..|+|||++...+.
T Consensus 26 ~vi~G~Ng~GKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCCCHHHHHHH
T ss_conf 9999999997437999999
No 412
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=39.60 E-value=14 Score=14.57 Aligned_cols=23 Identities=26% Similarity=0.238 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 24650257659789999999999
Q gi|254781215|r 79 KGAISAGRGIGKTTLNAWLVLWL 101 (511)
Q Consensus 79 r~aV~sgrG~GKS~l~a~l~lw~ 101 (511)
.+.+...-|+|||+++-.++-.+
T Consensus 6 ~Iil~G~~GsGKSTv~k~La~~l 28 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 39998999998899999999994
No 413
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A*
Probab=39.59 E-value=14 Score=14.57 Aligned_cols=22 Identities=23% Similarity=0.321 Sum_probs=18.6
Q ss_pred CEEEEEECCCCCCHHHHHHHHH
Q ss_conf 0124650257659789999999
Q gi|254781215|r 77 VFKGAISAGRGIGKTTLNAWLV 98 (511)
Q Consensus 77 ~~r~aV~sgrG~GKS~l~a~l~ 98 (511)
.++++|.+....|||++.=.++
T Consensus 26 ~p~I~VvG~~ssGKSTlINaLl 47 (341)
T 2x2e_A 26 LPQIAVVGGQSAGKSSVLENFV 47 (341)
T ss_dssp CCEEEEECBTTSSHHHHHHTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHH
T ss_conf 8869998489997999999995
No 414
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=39.40 E-value=14 Score=14.55 Aligned_cols=36 Identities=17% Similarity=0.138 Sum_probs=25.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHH
Q ss_conf 12465025765978999999999998089966999808589
Q gi|254781215|r 78 FKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSET 118 (511)
Q Consensus 78 ~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~~ 118 (511)
+.+||-++=|+|||+++..++--+ +...+-|-.-|+
T Consensus 17 i~IaIDGPagsGKsT~Ak~LAk~l-----g~~~ldTG~lYR 52 (236)
T 1q3t_A 17 IQIAIDGPASSGKSTVAKIIAKDF-----GFTYLDTGAMYR 52 (236)
T ss_dssp CEEEEECSSCSSHHHHHHHHHHHH-----CCEEEEHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH-----CCCEECHHHHHH
T ss_conf 389988999778899999999993-----995888369999
No 415
>2qmo_A Dethiobiotin synthetase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.47A {Helicobacter pylori 26695} PDB: 3mle_A*
Probab=39.16 E-value=14 Score=14.53 Aligned_cols=32 Identities=34% Similarity=0.376 Sum_probs=22.3
Q ss_pred EEC-CCCCCHHHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 502-5765978999999999998089966999808
Q gi|254781215|r 82 ISA-GRGIGKTTLNAWLVLWLMSTRPGISVICLAN 115 (511)
Q Consensus 82 V~s-grG~GKS~l~a~l~lw~l~~~p~~kv~vtAp 115 (511)
|.+ +-|+|||++++.|+..+.- .+-+|.+.=|
T Consensus 6 ItgT~t~vGKT~vs~~L~~~L~~--~G~~V~~~KP 38 (220)
T 2qmo_A 6 ISATNTNAGKTTCARLLAQYCNA--CGVKTILLKP 38 (220)
T ss_dssp EEESSTTSCHHHHHHHHHHHHHH--TTCCEEEECC
T ss_pred EEECCCCCCHHHHHHHHHHHHHH--CCCEEEEECC
T ss_conf 99799998799999999999997--8996999766
No 416
>2awn_A Maltose/maltodextrin import ATP-binding protein MALK; ATP-binding cassette, transport protein; HET: ADP; 2.30A {Escherichia coli K12} SCOP: b.40.6.3 c.37.1.12 PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 2r6g_A* 1q1b_A
Probab=39.03 E-value=14 Score=14.51 Aligned_cols=21 Identities=24% Similarity=0.151 Sum_probs=16.8
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 246502576597899999999
Q gi|254781215|r 79 KGAISAGRGIGKTTLNAWLVL 99 (511)
Q Consensus 79 r~aV~sgrG~GKS~l~a~l~l 99 (511)
-+++...-|+|||++.-.++=
T Consensus 31 ~~~llGpsG~GKSTllr~iaG 51 (381)
T 2awn_A 31 FVVFVGPSGCGKSTLLRMIAG 51 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCHHHHHHHHHHC
T ss_conf 999999999829999999975
No 417
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=38.86 E-value=14 Score=14.50 Aligned_cols=22 Identities=27% Similarity=0.354 Sum_probs=18.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHH
Q ss_conf 4650257659789999999999
Q gi|254781215|r 80 GAISAGRGIGKTTLNAWLVLWL 101 (511)
Q Consensus 80 ~aV~sgrG~GKS~l~a~l~lw~ 101 (511)
+.|....|+|||.|+--|+.-+
T Consensus 5 i~i~G~TgsGKS~Lai~LA~~~ 26 (409)
T 3eph_A 5 IVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEECSSSSHHHHHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHC
T ss_conf 9998976044999999999987
No 418
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=38.73 E-value=14 Score=14.48 Aligned_cols=55 Identities=7% Similarity=0.080 Sum_probs=37.8
Q ss_pred EEEEEECCCCCCCCEEEEEEC--CCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 899962333478417999822--7558998732778988999999999986188829980
Q gi|254781215|r 318 LIMGCDIAEEGGDNTVVVLRR--GPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIID 375 (511)
Q Consensus 318 ~viGvDVAr~G~D~svi~~r~--G~~v~~~~~~~~~d~~~~a~~i~~~~~~~~~~~i~iD 375 (511)
.++|+|++ .-+.-+++-+ +.....+......+.......+.+++++|++..++|-
T Consensus 2 riLglD~G---~kriGvAisd~~~~~A~pl~~i~~~~~~~~~~~l~~li~e~~i~~iVvG 58 (98)
T 1iv0_A 2 RVGALDVG---EARIGLAVGEEGVPLASGRGYLVRKTLEEDVEALLDFVRREGLGKLVVG 58 (98)
T ss_dssp CEEEEEES---SSEEEEEEECSCCSSCCCEEEEECCCHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CEEEEEEC---CCEEEEEEECCCCCEEECEEEEECCCCHHHHHHHHHHHHHHCCCEEEEC
T ss_conf 29999808---9989999925999878177889825856899999999997185749915
No 419
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=38.66 E-value=15 Score=14.48 Aligned_cols=35 Identities=11% Similarity=0.220 Sum_probs=17.7
Q ss_pred CCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCC--CHHHH
Q ss_conf 299788988888850799813899823899876--55676
Q gi|254781215|r 202 GTPDVINLGILGFLTERNANRFWIMTSNPRRLS--GKFYE 239 (511)
Q Consensus 202 gI~d~i~e~i~~~Lt~~g~~~~~i~~~nP~~~~--g~fy~ 239 (511)
|.++...+.++..+...+. ++.++.||+.. -..|-
T Consensus 150 g~~~~~~~~l~~~~~~~~G---lilisGpTGSGKSTTl~a 186 (418)
T 1p9r_A 150 GMTAHNHDNFRRLIKRPHG---IILVTGPTGSGKSTTLYA 186 (418)
T ss_dssp CCCHHHHHHHHHHHTSSSE---EEEEECSTTSCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCC---EEEEECCCCCCCHHHHHH
T ss_conf 9967899999999856897---799967998864178999
No 420
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii}
Probab=38.64 E-value=15 Score=14.48 Aligned_cols=40 Identities=20% Similarity=0.082 Sum_probs=28.0
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHH
Q ss_conf 12465025765978999999999998089966999808589
Q gi|254781215|r 78 FKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSET 118 (511)
Q Consensus 78 ~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~~ 118 (511)
.-+.+..-.|+|||+.+|=++.|+.-- -...++++|-|++
T Consensus 100 ~VIllvGl~GsGKTTT~aKLA~~l~~~-g~kv~lvaaDt~R 139 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKR-GLKPALIAADTYR 139 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHH-HCCEEEECCSCCC
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHC-CCCCEEEEECCCH
T ss_conf 699985798776214899999999977-9974244210336
No 421
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=38.26 E-value=15 Score=14.44 Aligned_cols=21 Identities=29% Similarity=0.254 Sum_probs=17.2
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q ss_conf 465025765978999999999
Q gi|254781215|r 80 GAISAGRGIGKTTLNAWLVLW 100 (511)
Q Consensus 80 ~aV~sgrG~GKS~l~a~l~lw 100 (511)
+.|..+.++|||.++-.++--
T Consensus 6 i~I~GpTasGKS~la~~LA~~ 26 (322)
T 3exa_A 6 VAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEECCTTSCHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999898721699999999998
No 422
>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C- terminal domain, open alpha-beta structure.; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3
Probab=38.18 E-value=15 Score=14.43 Aligned_cols=58 Identities=9% Similarity=0.042 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHCCCCCC-CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHH
Q ss_conf 99999999874056555-4210124650257659789999999999980899669998085899999
Q gi|254781215|r 57 EFMEVVDAHCLNSVNNP-NPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKT 122 (511)
Q Consensus 57 e~l~~i~~~~~~~~~~~-~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~~Q~~~ 122 (511)
++.++|+.+..+..+.. .+. .+.|.+ |-+.. ..++-.+++.|+..|++..|++.....
T Consensus 68 elr~aia~~~~~~~g~~~~~e--~v~it~----G~~~a--i~~~~~~l~~~gd~vlv~~P~y~~~~~ 126 (390)
T 1d2f_A 68 EFLAAIAHWFSTQHYTAIDSQ--TVVYGP----SVIYM--VSELIRQWSETGEGVVIHTPAYDAFYK 126 (390)
T ss_dssp HHHHHHHHHHHHHSCCCCCGG--GEEEES----CHHHH--HHHHHHHSSCTTCEEEEEESCCHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCC--EEEECC----CHHHH--HHHHHHHHCCCCCEEEECCCCCCHHHH
T ss_conf 999999999999868999803--699874----59999--999999853899878866888503689
No 423
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=38.05 E-value=15 Score=14.42 Aligned_cols=22 Identities=23% Similarity=0.075 Sum_probs=17.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHH
Q ss_conf 4650257659789999999999
Q gi|254781215|r 80 GAISAGRGIGKTTLNAWLVLWL 101 (511)
Q Consensus 80 ~aV~sgrG~GKS~l~a~l~lw~ 101 (511)
+.+-++.|+|||+|+..++.-.
T Consensus 39 l~L~G~~GsGKTHLl~a~~~~~ 60 (149)
T 2kjq_A 39 IYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp EEEESSSTTTTCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998899999999999
No 424
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens}
Probab=37.97 E-value=15 Score=14.41 Aligned_cols=22 Identities=14% Similarity=0.178 Sum_probs=17.8
Q ss_pred CCEEEEEECCCCCCHHHHHHHH
Q ss_conf 1012465025765978999999
Q gi|254781215|r 76 EVFKGAISAGRGIGKTTLNAWL 97 (511)
Q Consensus 76 ~~~r~aV~sgrG~GKS~l~a~l 97 (511)
..+|+++...-|+|||+++=.+
T Consensus 20 ~~~rI~liG~tg~GKStl~N~l 41 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSI 41 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHH
T ss_conf 9878999999998299999999
No 425
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=37.81 E-value=15 Score=14.39 Aligned_cols=20 Identities=25% Similarity=0.043 Sum_probs=17.6
Q ss_pred EEEEEECCCCCCHHHHHHHH
Q ss_conf 12465025765978999999
Q gi|254781215|r 78 FKGAISAGRGIGKTTLNAWL 97 (511)
Q Consensus 78 ~r~aV~sgrG~GKS~l~a~l 97 (511)
.|+++..-.++|||++.-.+
T Consensus 22 ~kI~ivG~~nvGKSSLin~l 41 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKL 41 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHH
T ss_conf 79999999999899999999
No 426
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: ATG; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* 2pjh_B
Probab=37.76 E-value=15 Score=14.39 Aligned_cols=11 Identities=18% Similarity=0.054 Sum_probs=3.5
Q ss_pred HHHHHHCCCCC
Q ss_conf 35444317566
Q gi|254781215|r 279 VTRVEVCGQFP 289 (511)
Q Consensus 279 ~~r~evlgeFp 289 (511)
+|--++...++
T Consensus 301 i~iDeiD~l~~ 311 (489)
T 3hu3_A 301 IFIDELDAIAP 311 (489)
T ss_dssp EEEESHHHHCB
T ss_pred CEEECHHHHHH
T ss_conf 00054233531
No 427
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP- binding, ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=37.52 E-value=15 Score=14.37 Aligned_cols=37 Identities=27% Similarity=0.303 Sum_probs=24.3
Q ss_pred CCEEEEEEC-CCCCCHHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 101246502-576597899999999999808996699980
Q gi|254781215|r 76 EVFKGAISA-GRGIGKTTLNAWLVLWLMSTRPGISVICLA 114 (511)
Q Consensus 76 ~~~r~aV~s-grG~GKS~l~a~l~lw~l~~~p~~kv~vtA 114 (511)
+|.-+-|.+ +-|+|||++++.|+..+.- .+-+|.+.=
T Consensus 25 ~M~~lfItGT~TgVGKT~Vs~~L~~aL~~--~G~~V~~~K 62 (251)
T 3fgn_A 25 HMTILVVTGTGTGVGKTVVCAALASAARQ--AGIDVAVCK 62 (251)
T ss_dssp SCEEEEEEESSTTSCHHHHHHHHHHHHHH--TTCCEEEEE
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHH--CCCEEEEEC
T ss_conf 59868998699996199999999999996--899499977
No 428
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=37.34 E-value=15 Score=14.35 Aligned_cols=23 Identities=22% Similarity=0.242 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 24650257659789999999999
Q gi|254781215|r 79 KGAISAGRGIGKTTLNAWLVLWL 101 (511)
Q Consensus 79 r~aV~sgrG~GKS~l~a~l~lw~ 101 (511)
-++|-+.=|+|||+++..|.-++
T Consensus 4 fI~iEG~~GsGKST~~~~L~~~l 26 (241)
T 2ocp_A 4 RLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998999884999999999998
No 429
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=37.32 E-value=15 Score=14.34 Aligned_cols=20 Identities=40% Similarity=0.301 Sum_probs=16.6
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 24650257659789999999
Q gi|254781215|r 79 KGAISAGRGIGKTTLNAWLV 98 (511)
Q Consensus 79 r~aV~sgrG~GKS~l~a~l~ 98 (511)
-+++...-|+|||++.-.++
T Consensus 32 ~~~ilGpsGsGKSTllr~i~ 51 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLA 51 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHH
T ss_conf 99999999864999999997
No 430
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=37.30 E-value=15 Score=14.34 Aligned_cols=23 Identities=30% Similarity=0.203 Sum_probs=18.9
Q ss_pred CCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 10124650257659789999999
Q gi|254781215|r 76 EVFKGAISAGRGIGKTTLNAWLV 98 (511)
Q Consensus 76 ~~~r~aV~sgrG~GKS~l~a~l~ 98 (511)
.-.|+.+...-|+|||+|...+.
T Consensus 6 ke~ki~lvG~~~vGKSsLi~~l~ 28 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQ 28 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
T ss_conf 40089999999989899999997
No 431
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=37.26 E-value=15 Score=14.34 Aligned_cols=29 Identities=24% Similarity=0.186 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 24650257659789999999999980899
Q gi|254781215|r 79 KGAISAGRGIGKTTLNAWLVLWLMSTRPG 107 (511)
Q Consensus 79 r~aV~sgrG~GKS~l~a~l~lw~l~~~p~ 107 (511)
-+.+...-|+|||+++..|+--+-..+.+
T Consensus 7 ~I~l~G~~GsGKSTia~~La~~L~~~~~~ 35 (179)
T 2pez_A 7 TVWLTGLSGAGKTTVSMALEEYLVCHGIP 35 (179)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 99988999989999999999997445887
No 432
>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}
Probab=37.22 E-value=15 Score=14.34 Aligned_cols=28 Identities=14% Similarity=0.005 Sum_probs=19.4
Q ss_pred HHHHHHHHHHCCCCEEEEEECCHHHHHH
Q ss_conf 9999999980899669998085899999
Q gi|254781215|r 95 AWLVLWLMSTRPGISVICLANSETQLKT 122 (511)
Q Consensus 95 a~l~lw~l~~~p~~kv~vtApt~~Q~~~ 122 (511)
+..++-..++.|+..|++..|++.....
T Consensus 111 ~l~~~~~~l~~~gd~Vlv~~P~y~~~~~ 138 (412)
T 2x5d_A 111 GLAHLMLATLDHGDTILVPNPSYPIHIY 138 (412)
T ss_dssp HHHHHHHHHCCTTCEEEEEESCCHHHHH
T ss_pred HHHHHHHHHHCCCCEEEECCCCCHHHHH
T ss_conf 9999999984797999990797646899
No 433
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=37.04 E-value=15 Score=14.32 Aligned_cols=25 Identities=28% Similarity=0.122 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 2465025765978999999999998
Q gi|254781215|r 79 KGAISAGRGIGKTTLNAWLVLWLMS 103 (511)
Q Consensus 79 r~aV~sgrG~GKS~l~a~l~lw~l~ 103 (511)
-+|+-.+=|+|||+++..++--+=+
T Consensus 7 IIaIDGPagSGKST~ak~LA~~Lg~ 31 (227)
T 1cke_A 7 VITIDGPSGAGKGTLCKAMAEALQW 31 (227)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 8997789867889999999999199
No 434
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=37.02 E-value=15 Score=14.32 Aligned_cols=21 Identities=24% Similarity=0.077 Sum_probs=17.1
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 246502576597899999999
Q gi|254781215|r 79 KGAISAGRGIGKTTLNAWLVL 99 (511)
Q Consensus 79 r~aV~sgrG~GKS~l~a~l~l 99 (511)
-+++...-|.|||++...++-
T Consensus 31 ~~~i~GpsGsGKsTll~~i~G 51 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAG 51 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCHHHHHHHHHHC
T ss_conf 999999999649999999973
No 435
>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, lyase; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*
Probab=36.93 E-value=15 Score=14.31 Aligned_cols=58 Identities=16% Similarity=0.212 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHCCCC---CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHH
Q ss_conf 9999999998740565---55421012465025765978999999999998089966999808589999
Q gi|254781215|r 56 LEFMEVVDAHCLNSVN---NPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLK 121 (511)
Q Consensus 56 ~e~l~~i~~~~~~~~~---~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~~Q~~ 121 (511)
.++-++|+++..+..+ ...|. .+.|.+ |=+ .+..++-.+++.|+-.|++.+|++....
T Consensus 86 ~~LR~aia~~l~~~~g~~~~~~~e--~I~it~----G~~--~al~~~~~~l~~~Gd~Vlv~~P~y~~~~ 146 (428)
T 1iay_A 86 PEFRKAIAKFMEKTRGGRVRFDPE--RVVMAG----GAT--GANETIIFCLADPGDAFLVPSPYYPAFN 146 (428)
T ss_dssp HHHHHHHHHHHHHHTTTCSCCCTT--SCEEEE----HHH--HHHHHHHHHHCCTTCEEEEESSCCTTHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCCHH--HEEECC----CHH--HHHHHHHHHHCCCCCEEEEECCCCHHHH
T ss_conf 999999999999985999998764--199868----899--9999999996499898999079750599
No 436
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=36.90 E-value=15 Score=14.30 Aligned_cols=21 Identities=24% Similarity=0.071 Sum_probs=17.4
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q ss_conf 465025765978999999999
Q gi|254781215|r 80 GAISAGRGIGKTTLNAWLVLW 100 (511)
Q Consensus 80 ~aV~sgrG~GKS~l~a~l~lw 100 (511)
+.|....|+|||.++-.++--
T Consensus 10 i~i~GpTasGKT~la~~LA~~ 30 (340)
T 3d3q_A 10 IVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999897713589999999998
No 437
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=36.88 E-value=15 Score=14.30 Aligned_cols=36 Identities=14% Similarity=0.088 Sum_probs=25.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHH
Q ss_conf 12465025765978999999999998089966999808589
Q gi|254781215|r 78 FKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSET 118 (511)
Q Consensus 78 ~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~~ 118 (511)
+.+||-++=|+|||+++..++--+ +...+-|-.-|+
T Consensus 4 i~IaIDGpagSGKsT~ak~LA~~l-----~~~~ldTG~lYR 39 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASEL-----SMIYVDTGAMYR 39 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT-----TCEEEEHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH-----CCEEECHHHHHH
T ss_conf 599977898678899999999992-----992753689999
No 438
>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A*
Probab=36.65 E-value=16 Score=14.28 Aligned_cols=35 Identities=29% Similarity=0.309 Sum_probs=25.2
Q ss_pred CCCHHHHHHHHHHHHH------HHCCCCEEEEEECCHHHHH
Q ss_conf 6597899999999999------8089966999808589999
Q gi|254781215|r 87 GIGKTTLNAWLVLWLM------STRPGISVICLANSETQLK 121 (511)
Q Consensus 87 G~GKS~l~a~l~lw~l------~~~p~~kv~vtApt~~Q~~ 121 (511)
|+|=|.+...++.-+. ...|+.+|++.+|++..-+
T Consensus 129 g~Gsteli~a~~~AL~~~~~~~~~~pgd~Vv~~~P~y~~Y~ 169 (427)
T 2hox_A 129 GVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFR 169 (427)
T ss_dssp ESHHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCHHHHH
T ss_conf 88899999999998542133455799998999068727899
No 439
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) class, TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima MSB8}
Probab=36.05 E-value=16 Score=14.22 Aligned_cols=21 Identities=33% Similarity=0.140 Sum_probs=17.4
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 246502576597899999999
Q gi|254781215|r 79 KGAISAGRGIGKTTLNAWLVL 99 (511)
Q Consensus 79 r~aV~sgrG~GKS~l~a~l~l 99 (511)
-+++...-|.|||++.-.++=
T Consensus 31 ~~~llGpsGsGKsTll~~iaG 51 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAG 51 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCHHHHHHHHHHC
T ss_conf 999999999869999999975
No 440
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=35.38 E-value=16 Score=14.15 Aligned_cols=37 Identities=19% Similarity=0.188 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 999999999987405655542101246502576597899999999
Q gi|254781215|r 55 QLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVL 99 (511)
Q Consensus 55 Q~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~l 99 (511)
|.++.+.+.-...+. + -+-....-|+|||.++..++-
T Consensus 46 Q~~a~~~~~~Aa~~~---~-----~llL~GpPGtGKT~lAr~ia~ 82 (604)
T 3k1j_A 46 QEHAVEVIKTAANQK---R-----HVLLIGEPGTGKSMLGQAMAE 82 (604)
T ss_dssp CHHHHHHHHHHHHTT---C-----CEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCC---C-----CEEEECCCCCHHHHHHHHHHH
T ss_conf 899999999960679---9-----689989998119999999997
No 441
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genomics consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum 3D7}
Probab=35.28 E-value=11 Score=15.20 Aligned_cols=21 Identities=33% Similarity=0.243 Sum_probs=17.0
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q ss_conf 465025765978999999999
Q gi|254781215|r 80 GAISAGRGIGKTTLNAWLVLW 100 (511)
Q Consensus 80 ~aV~sgrG~GKS~l~a~l~lw 100 (511)
+.+.+.-|+|||+++..|+-.
T Consensus 26 IVl~GPSGsGK~tL~~~L~~~ 46 (218)
T 1z6g_A 26 LVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999999999999999999971
No 442
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=35.27 E-value=16 Score=14.14 Aligned_cols=23 Identities=22% Similarity=0.069 Sum_probs=18.1
Q ss_pred CEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 01246502576597899999999
Q gi|254781215|r 77 VFKGAISAGRGIGKTTLNAWLVL 99 (511)
Q Consensus 77 ~~r~aV~sgrG~GKS~l~a~l~l 99 (511)
.--+++...-|+|||++.-.++-
T Consensus 41 Ge~~~llGpsGsGKSTllr~iaG 63 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLIAG 63 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCHHHHHHHHHHC
T ss_conf 98999999998459999999975
No 443
>2c95_A Adenylate kinase 1; AP4A, nucleotide kinase, transferase, ATP-binding; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=35.26 E-value=16 Score=14.14 Aligned_cols=22 Identities=27% Similarity=0.179 Sum_probs=17.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHH
Q ss_conf 4650257659789999999999
Q gi|254781215|r 80 GAISAGRGIGKTTLNAWLVLWL 101 (511)
Q Consensus 80 ~aV~sgrG~GKS~l~a~l~lw~ 101 (511)
+.+-.+-|+|||+.+..|+--+
T Consensus 12 I~i~G~pGSGKsT~a~~La~~~ 33 (196)
T 2c95_A 12 IFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp EEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998799999999987
No 444
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=35.25 E-value=16 Score=14.14 Aligned_cols=23 Identities=22% Similarity=0.385 Sum_probs=16.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHH
Q ss_conf 4650257659789999999999980
Q gi|254781215|r 80 GAISAGRGIGKTTLNAWLVLWLMST 104 (511)
Q Consensus 80 ~aV~sgrG~GKS~l~a~l~lw~l~~ 104 (511)
..|....|.|||++.-++. +++.
T Consensus 29 ~~I~G~NGsGKSsildAi~--~~l~ 51 (182)
T 3kta_A 29 TAIVGANGSGKSNIGDAIL--FVLG 51 (182)
T ss_dssp EEEEECTTSSHHHHHHHHH--HHTT
T ss_pred EEEECCCCCCCHHHHHHHH--HHCC
T ss_conf 7999999997214767778--6416
No 445
>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 1ars_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* 1cq7_A* ...
Probab=35.04 E-value=17 Score=14.12 Aligned_cols=65 Identities=12% Similarity=-0.081 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHH
Q ss_conf 99999999998740565554210124650257659789999999999980899669998085899999
Q gi|254781215|r 55 QLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKT 122 (511)
Q Consensus 55 Q~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~~Q~~~ 122 (511)
-.++.++|+++..+........-.-+.+. +.|.+...+........+.|+..|++..|++.....
T Consensus 71 ~~~lr~aia~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~gd~Vlv~~P~y~~y~~ 135 (396)
T 2q7w_A 71 IPEFGRCTQELLFGKGSALINDKRARTAQ---TPGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKS 135 (396)
T ss_dssp CHHHHHHHHHHHHCTTCHHHHTTCEEEEE---ESHHHHHHHHHHHHHHHHSCCCEEEEEESCCTHHHH
T ss_pred CHHHHHHHHHHHHHCCCCCCCCCEEEEEC---CCHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHH
T ss_conf 89999999999974589877886499961---757899999999999736999889982889864899
No 446
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A*
Probab=34.68 E-value=17 Score=14.08 Aligned_cols=20 Identities=25% Similarity=0.144 Sum_probs=17.5
Q ss_pred EEEEEECCCCCCHHHHHHHH
Q ss_conf 12465025765978999999
Q gi|254781215|r 78 FKGAISAGRGIGKTTLNAWL 97 (511)
Q Consensus 78 ~r~aV~sgrG~GKS~l~a~l 97 (511)
+|+.|..--|+|||+|...+
T Consensus 30 ~KIvivG~~~vGKSSLi~~l 49 (192)
T 2b6h_A 30 MRILMVGLDAAGKTTILYKL 49 (192)
T ss_dssp EEEEEEESTTSSHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHH
T ss_conf 79999999998689999999
No 447
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=34.61 E-value=17 Score=14.07 Aligned_cols=13 Identities=8% Similarity=-0.452 Sum_probs=5.6
Q ss_pred CCCEEEEECCCCC
Q ss_conf 4741798404336
Q gi|254781215|r 246 DDWKRFQIDTRTV 258 (511)
Q Consensus 246 ~~w~~~~i~~~~~ 258 (511)
..+++..++...+
T Consensus 270 ~g~~vl~~s~E~~ 282 (503)
T 1q57_A 270 MGKKVGLAMLEES 282 (503)
T ss_dssp SCCCEEEEESSSC
T ss_pred CCCCCCCCCCCCC
T ss_conf 3983010554578
No 448
>2wsm_A Hydrogenase expression/formation protein (HYPB); hydrogenase maturation factor, metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=34.17 E-value=17 Score=14.03 Aligned_cols=43 Identities=14% Similarity=0.086 Sum_probs=27.8
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHH
Q ss_conf 0124650257659789999999999980899669998085899999
Q gi|254781215|r 77 VFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKT 122 (511)
Q Consensus 77 ~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~~Q~~~ 122 (511)
+.+|++..--|+|||+|+-.++-.. +...++.++++.....++
T Consensus 30 ~~~V~ivG~pnaGKSTLln~L~~~~---~~~~~~~~~~~~~~~~~d 72 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERI---GNEVKIGAMLGDVVSKAD 72 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHH---TTTSCEEEEECSCCCHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH---HCCCCEEEEECCCCCCHH
T ss_conf 8499988899998999999999886---146735675257765313
No 449
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=34.14 E-value=17 Score=14.03 Aligned_cols=20 Identities=15% Similarity=0.130 Sum_probs=17.0
Q ss_pred EEEEEECCCCCCHHHHHHHH
Q ss_conf 12465025765978999999
Q gi|254781215|r 78 FKGAISAGRGIGKTTLNAWL 97 (511)
Q Consensus 78 ~r~aV~sgrG~GKS~l~a~l 97 (511)
.|+.+..--|+|||++...+
T Consensus 21 ~KI~l~G~~~vGKSSLi~~l 40 (196)
T 3llu_A 21 PRILLMGLRRSGKSSIQKVV 40 (196)
T ss_dssp CEEEEEESTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
T ss_conf 28999998998999999999
No 450
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii OT3} SCOP: c.37.1.8
Probab=33.85 E-value=17 Score=14.00 Aligned_cols=22 Identities=23% Similarity=0.217 Sum_probs=17.8
Q ss_pred CEEEEEECCCCCCHHHHHHHHH
Q ss_conf 0124650257659789999999
Q gi|254781215|r 77 VFKGAISAGRGIGKTTLNAWLV 98 (511)
Q Consensus 77 ~~r~aV~sgrG~GKS~l~a~l~ 98 (511)
|..|++...-++|||++.-.+.
T Consensus 1 ~~~I~lvG~~n~GKStLin~L~ 22 (190)
T 2cxx_A 1 MATIIFAGRSNVGKSTLIYRLT 22 (190)
T ss_dssp -CEEEEEEBTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
T ss_conf 9889998999986999999996
No 451
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=33.49 E-value=18 Score=13.96 Aligned_cols=22 Identities=23% Similarity=0.324 Sum_probs=18.5
Q ss_pred CEEEEEECCCCCCHHHHHHHHH
Q ss_conf 0124650257659789999999
Q gi|254781215|r 77 VFKGAISAGRGIGKTTLNAWLV 98 (511)
Q Consensus 77 ~~r~aV~sgrG~GKS~l~a~l~ 98 (511)
-.+|++.+--++|||+|...++
T Consensus 7 ~~~I~lvG~~~vGKSSLin~l~ 28 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALT 28 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
T ss_conf 4589999999987999999996
No 452
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis, plasmid; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=33.41 E-value=18 Score=13.95 Aligned_cols=23 Identities=17% Similarity=-0.007 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 24650257659789999999999
Q gi|254781215|r 79 KGAISAGRGIGKTTLNAWLVLWL 101 (511)
Q Consensus 79 r~aV~sgrG~GKS~l~a~l~lw~ 101 (511)
-+.|..+.|+|||.++-.++--+
T Consensus 3 l~~I~GpTasGKS~lAi~LA~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHC
T ss_conf 99997987527899999999986
No 453
>1w5s_A ORC2; CDC6, DNA replication initiation, DNA binding protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=33.33 E-value=18 Score=13.94 Aligned_cols=48 Identities=23% Similarity=0.112 Sum_probs=24.8
Q ss_pred HHHHHHHHHH-HHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 5899999999-999874056555421012465025765978999999999
Q gi|254781215|r 52 RSWQLEFMEV-VDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLW 100 (511)
Q Consensus 52 ~~WQ~e~l~~-i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw 100 (511)
|+=|.+.|.. +.....++..-. +..+=+.+...-|+|||+++-.++--
T Consensus 27 Re~ei~~l~~~~~~~~~~g~~~~-~~~~i~~i~GppGTGKT~~~~~v~~~ 75 (412)
T 1w5s_A 27 RRGEAEALARIYLNRLLSGAGLS-DVNMIYGSIGRVGIGKTTLAKFTVKR 75 (412)
T ss_dssp SCHHHHHHHHHHHHHHHTSSCBC-CEEEEEECTTCCSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCCC-CEEEEEECCCCCCCCHHHHHHHHHHH
T ss_conf 69999999999999997499999-82389846689998899999999999
No 454
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=33.28 E-value=18 Score=13.94 Aligned_cols=22 Identities=23% Similarity=0.015 Sum_probs=17.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q ss_conf 2465025765978999999999
Q gi|254781215|r 79 KGAISAGRGIGKTTLNAWLVLW 100 (511)
Q Consensus 79 r~aV~sgrG~GKS~l~a~l~lw 100 (511)
-+.|..+.|+|||.++--++--
T Consensus 7 vi~I~GpTasGKt~la~~lA~~ 28 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999897711699999999998
No 455
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferase; nucleoside modification, isopentenyl-tRNA transferase, MIAA, transferase/RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=33.18 E-value=18 Score=13.93 Aligned_cols=22 Identities=23% Similarity=0.021 Sum_probs=17.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q ss_conf 2465025765978999999999
Q gi|254781215|r 79 KGAISAGRGIGKTTLNAWLVLW 100 (511)
Q Consensus 79 r~aV~sgrG~GKS~l~a~l~lw 100 (511)
-+.|..+.++|||.|+-.++--
T Consensus 12 vi~I~GpTasGKs~La~~lA~~ 33 (316)
T 3foz_A 12 AIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 6999898832799999999998
No 456
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 3k0c_A* 3k0f_A*
Probab=32.99 E-value=18 Score=13.91 Aligned_cols=40 Identities=15% Similarity=0.057 Sum_probs=27.4
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 42101246502576597899999999999808996699980
Q gi|254781215|r 74 NPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLA 114 (511)
Q Consensus 74 ~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtA 114 (511)
.|...=+.|.+.-|+|||.++.-++.-.+..+ +.+++++.
T Consensus 36 ip~Gs~~lI~G~pGsGKT~la~q~l~~~~~~~-ge~vlyis 75 (525)
T 1tf7_A 36 LPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEF-DEPGVFVT 75 (525)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHHH-CCCEEEEE
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHHHHC-CCEEEEEE
T ss_conf 98992999993899889999999999999867-98599997
No 457
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=32.96 E-value=18 Score=13.91 Aligned_cols=22 Identities=32% Similarity=0.207 Sum_probs=17.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHH
Q ss_conf 4650257659789999999999
Q gi|254781215|r 80 GAISAGRGIGKTTLNAWLVLWL 101 (511)
Q Consensus 80 ~aV~sgrG~GKS~l~a~l~lw~ 101 (511)
+.+.++-|+|||+++..|+-.+
T Consensus 7 Ivi~GpsGsGK~Tl~~~L~~~~ 28 (198)
T 1lvg_A 7 VVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHC
T ss_conf 9999999999999999999858
No 458
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=32.80 E-value=18 Score=13.89 Aligned_cols=18 Identities=22% Similarity=0.379 Sum_probs=14.5
Q ss_pred EEEEEECCCCCCHHHHHH
Q ss_conf 124650257659789999
Q gi|254781215|r 78 FKGAISAGRGIGKTTLNA 95 (511)
Q Consensus 78 ~r~aV~sgrG~GKS~l~a 95 (511)
.-|.+...-|+|||+++-
T Consensus 35 ~~v~i~G~SG~GKStl~l 52 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETAL 52 (205)
T ss_dssp EEEEEECCCTTTTHHHHH
T ss_pred EEEEEECCCCCCHHHHHH
T ss_conf 999998289999899999
No 459
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=32.69 E-value=18 Score=13.88 Aligned_cols=22 Identities=27% Similarity=0.055 Sum_probs=17.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHH
Q ss_conf 1246502576597899999999
Q gi|254781215|r 78 FKGAISAGRGIGKTTLNAWLVL 99 (511)
Q Consensus 78 ~r~aV~sgrG~GKS~l~a~l~l 99 (511)
--+++...-|+|||++.-.++=
T Consensus 30 e~~~llGpsGsGKsTll~~iaG 51 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIAG 51 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCHHHHHHHHHHC
T ss_conf 8999999998549999999974
No 460
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=32.65 E-value=18 Score=13.87 Aligned_cols=35 Identities=23% Similarity=0.091 Sum_probs=23.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHH
Q ss_conf 465025765978999999999998089966999808589
Q gi|254781215|r 80 GAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSET 118 (511)
Q Consensus 80 ~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~~ 118 (511)
+++-..=|+|||+++..|.-++ ... -.++.-|...
T Consensus 8 IviEGidGsGKST~~~~L~~~L---~~~-~~~~~~p~~~ 42 (216)
T 3tmk_A 8 ILIEGLDRTGKTTQCNILYKKL---QPN-CKLLKFPERS 42 (216)
T ss_dssp EEEEECSSSSHHHHHHHHHHHH---CSS-EEEEESSCTT
T ss_pred EEEECCCCCCHHHHHHHHHHHH---HCC-CEEEEECCCC
T ss_conf 9998998884999999999999---719-8899978999
No 461
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=31.80 E-value=19 Score=13.79 Aligned_cols=64 Identities=17% Similarity=0.037 Sum_probs=38.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHH---HHHCCCCEEEEEECCH
Q ss_conf 55578458999999999998740565554210124650257659789999999999---9808996699980858
Q gi|254781215|r 46 EGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWL---MSTRPGISVICLANSE 117 (511)
Q Consensus 46 ~~~~~P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~---l~~~p~~kv~vtApt~ 117 (511)
.+|.| -.+.+..|.+...+... ....|+|.+-=|+|||++++.++.=. -.++|+....++....
T Consensus 124 ~~fvg----R~~~~~~i~~~L~~~~~----~~~~V~I~G~gG~GKTtLA~~~~~~~~~~~~~f~~~v~wv~v~~~ 190 (591)
T 1z6t_A 124 VVFVT----RKKLVNAIQQKLSKLKG----EPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ 190 (591)
T ss_dssp SSCCC----CHHHHHHHHHHHTTSTT----SCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC
T ss_pred CCCCC----CHHHHHHHHHHHHHCCC----CCCEEEEECCCCCCHHHHHHHHHHCHHHHHHCCCCEEEEEEECCC
T ss_conf 88518----29999999999871389----973799889997768999999996789886148973899984777
No 462
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=31.75 E-value=19 Score=13.78 Aligned_cols=21 Identities=29% Similarity=0.129 Sum_probs=17.9
Q ss_pred CEEEEEECCCCCCHHHHHHHH
Q ss_conf 012465025765978999999
Q gi|254781215|r 77 VFKGAISAGRGIGKTTLNAWL 97 (511)
Q Consensus 77 ~~r~aV~sgrG~GKS~l~a~l 97 (511)
-+|+.|..-.|+|||++.--+
T Consensus 16 ~~kI~vvG~~~~GKTsLi~~l 36 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQL 36 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHH
T ss_conf 879999999999899999999
No 463
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=31.47 E-value=15 Score=14.35 Aligned_cols=20 Identities=30% Similarity=0.326 Sum_probs=16.6
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 24650257659789999999
Q gi|254781215|r 79 KGAISAGRGIGKTTLNAWLV 98 (511)
Q Consensus 79 r~aV~sgrG~GKS~l~a~l~ 98 (511)
-+++...-|+|||++.-.++
T Consensus 33 ~~~i~GpsGsGKSTllr~ia 52 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIA 52 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHH
T ss_conf 99999999975999999997
No 464
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=31.13 E-value=19 Score=13.72 Aligned_cols=21 Identities=29% Similarity=0.101 Sum_probs=17.7
Q ss_pred CEEEEEECCCCCCHHHHHHHH
Q ss_conf 012465025765978999999
Q gi|254781215|r 77 VFKGAISAGRGIGKTTLNAWL 97 (511)
Q Consensus 77 ~~r~aV~sgrG~GKS~l~a~l 97 (511)
++=|+|.+...+|||+|+-.+
T Consensus 38 v~vvsi~G~~~sGKS~LlN~l 58 (592)
T 1f5n_A 38 MVVVAIVGLYRTGKSYLMNKL 58 (592)
T ss_dssp EEEEEEEEBTTSSHHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHH
T ss_conf 799987789999799999997
No 465
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.10A {Aeropyrum pernix K1}
Probab=30.95 E-value=19 Score=13.70 Aligned_cols=24 Identities=29% Similarity=0.230 Sum_probs=17.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 124650257659789999999999
Q gi|254781215|r 78 FKGAISAGRGIGKTTLNAWLVLWL 101 (511)
Q Consensus 78 ~r~aV~sgrG~GKS~l~a~l~lw~ 101 (511)
.-+-+..--|+|||+++..|+--+
T Consensus 14 ~iI~itG~~GSGKSTlAk~La~~L 37 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 599989999999999999999998
No 466
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3add_A* 3adc_A* 3adb_A*
Probab=30.82 E-value=19 Score=13.68 Aligned_cols=33 Identities=27% Similarity=0.279 Sum_probs=22.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 24650257659789999999999980899669998
Q gi|254781215|r 79 KGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICL 113 (511)
Q Consensus 79 r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vt 113 (511)
=+.+.+.=|+|||+++..+.-.+-.... .+++.
T Consensus 6 LIil~G~PGSGKST~A~~L~~~l~~~~~--~~~~i 38 (260)
T 3a4m_A 6 LIILTGLPGVGKSTFSKNLAKILSKNNI--DVIVL 38 (260)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTC--CEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCC--CEEEE
T ss_conf 9998899999889999999999985299--93997
No 467
>3ez1_A Aminotransferase MOCR family; YP_604413.1, structural genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}
Probab=30.41 E-value=20 Score=13.64 Aligned_cols=20 Identities=5% Similarity=-0.170 Sum_probs=16.7
Q ss_pred HCCCCEEEEEECCHHHHHHH
Q ss_conf 08996699980858999999
Q gi|254781215|r 104 TRPGISVICLANSETQLKTT 123 (511)
Q Consensus 104 ~~p~~kv~vtApt~~Q~~~i 123 (511)
+.|+-+|+|..|++.....+
T Consensus 121 ~~~Gd~vl~p~P~y~~~~~~ 140 (423)
T 3ez1_A 121 LSQTPKMIVTVPGYDRHFLL 140 (423)
T ss_dssp GGGCCEEEEEESCCHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHH
T ss_conf 79999899979983899999
No 468
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=30.21 E-value=20 Score=13.62 Aligned_cols=21 Identities=33% Similarity=0.422 Sum_probs=17.2
Q ss_pred CEEEEEECCCCCCHHHHHHHH
Q ss_conf 012465025765978999999
Q gi|254781215|r 77 VFKGAISAGRGIGKTTLNAWL 97 (511)
Q Consensus 77 ~~r~aV~sgrG~GKS~l~a~l 97 (511)
-+.+-|.+..|+|||+++=.+
T Consensus 31 ~~~Ilv~G~tG~GKSt~iNsl 51 (418)
T 2qag_C 31 EFTLMVVGESGLGKSTLINSL 51 (418)
T ss_dssp CEEEEEECCTTSSHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHH
T ss_conf 049999778999399999999
No 469
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=29.97 E-value=20 Score=13.59 Aligned_cols=24 Identities=33% Similarity=0.163 Sum_probs=19.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 465025765978999999999998
Q gi|254781215|r 80 GAISAGRGIGKTTLNAWLVLWLMS 103 (511)
Q Consensus 80 ~aV~sgrG~GKS~l~a~l~lw~l~ 103 (511)
++|-..=|+|||+++..|.-++-.
T Consensus 3 I~ieG~dGsGKST~~~~L~e~l~~ 26 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 999899878999999999999987
No 470
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=29.83 E-value=20 Score=13.58 Aligned_cols=37 Identities=19% Similarity=0.163 Sum_probs=27.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHH
Q ss_conf 465025765978999999999998089966999808589
Q gi|254781215|r 80 GAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSET 118 (511)
Q Consensus 80 ~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~~ 118 (511)
+.|.++-|.|||.++..++.- ++.+ +..++++=|+-+
T Consensus 56 ~lI~G~TGsGKT~~l~~ll~~-~~~~-g~~~iviDpkge 92 (437)
T 1e9r_A 56 LLVNGATGTGKSVLLRELAYT-GLLR-GDRMVIVDPNGD 92 (437)
T ss_dssp EEEEECTTSSHHHHHHHHHHH-HHHT-TCEEEEEEETTH
T ss_pred EEEECCCCCCHHHHHHHHHHH-HHHC-CCCEEEEECCCH
T ss_conf 899816998689999999999-9868-998899979836
No 471
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens}
Probab=29.69 E-value=20 Score=13.56 Aligned_cols=21 Identities=14% Similarity=0.294 Sum_probs=15.4
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q ss_conf 465025765978999999999
Q gi|254781215|r 80 GAISAGRGIGKTTLNAWLVLW 100 (511)
Q Consensus 80 ~aV~sgrG~GKS~l~a~l~lw 100 (511)
+.+.+.-|+|||+++..|+--
T Consensus 22 Ivl~GpSG~GK~tl~~~L~~~ 42 (197)
T 3ney_A 22 LVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999998999999999999972
No 472
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, membrane, nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=29.55 E-value=20 Score=13.55 Aligned_cols=33 Identities=12% Similarity=0.049 Sum_probs=23.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 12465025765978999999999998089966999808
Q gi|254781215|r 78 FKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLAN 115 (511)
Q Consensus 78 ~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtAp 115 (511)
..+-.....|+|||.++-.++-.. +..++.+.+
T Consensus 52 ~giLL~GPpGtGKT~la~aiA~e~-----~~~~~~i~~ 84 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVATEA-----NSTFFSVSS 84 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHHHHH-----TCEEEEEEH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH-----CCCEEEEEH
T ss_conf 716887979987899999999985-----898567568
No 473
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=29.36 E-value=21 Score=13.53 Aligned_cols=52 Identities=15% Similarity=0.041 Sum_probs=27.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHCC---CCCCCCCCEEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 5784589999999999987405---6555421012465025765978999999999
Q gi|254781215|r 48 FSAPRSWQLEFMEVVDAHCLNS---VNNPNPEVFKGAISAGRGIGKTTLNAWLVLW 100 (511)
Q Consensus 48 ~~~P~~WQ~e~l~~i~~~~~~~---~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw 100 (511)
.-|.+....++-+.|.-..... .+...| ...+-...+-|+|||.++..++--
T Consensus 23 i~G~~~~k~~l~e~v~~~~~~~~~~~~~~~p-~~giLL~GPpGtGKT~la~aiA~~ 77 (297)
T 3b9p_A 23 IAGQDVAKQALQEMVILPSVRPELFTGLRAP-AKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp SCCCHHHHHHHHHHTHHHHHCGGGSCGGGCC-CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred HCCHHHHHHHHHHHHHHHHCCHHHHHCCCCC-CCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 6389999999999999575099989349999-824888896997499999999852
No 474
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, replication initiation; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 2hcb_A*
Probab=29.14 E-value=21 Score=13.50 Aligned_cols=50 Identities=24% Similarity=0.072 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 99999999998740565554210124650257659789999999999980899669998
Q gi|254781215|r 55 QLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICL 113 (511)
Q Consensus 55 Q~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vt 113 (511)
-..+++++.++. .....| +.+-++-|+|||+|+..++.... ..+.+++++
T Consensus 22 A~~a~~~i~~~~---g~~~np----l~l~G~~G~GKTHLl~Ai~~~~~--~~~~~v~y~ 71 (324)
T 1l8q_A 22 AYEVVKEALENL---GSLYNP----IFIYGSVGTGKTHLLQAAGNEAK--KRGYRVIYS 71 (324)
T ss_dssp HHHHHHHHHHTT---TTSCSS----EEEECSSSSSHHHHHHHHHHHHH--HTTCCEEEE
T ss_pred HHHHHHHHHHCC---CCCCCE----EEEECCCCCCHHHHHHHHHHHHH--HCCCCEEEE
T ss_conf 999999998674---766761----89888999989999999999998--549975994
No 475
>3dhw_C Methionine import ATP-binding protein METN; ABC-transporter, methionine uptake transporter, membrane protein, amino-acid transport; 3.70A {Escherichia coli K12} SCOP: c.37.1.12 d.58.18.13
Probab=29.09 E-value=21 Score=13.50 Aligned_cols=21 Identities=29% Similarity=0.308 Sum_probs=16.7
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 246502576597899999999
Q gi|254781215|r 79 KGAISAGRGIGKTTLNAWLVL 99 (511)
Q Consensus 79 r~aV~sgrG~GKS~l~a~l~l 99 (511)
-+++...-|+|||+++..++-
T Consensus 33 ~~~ivG~SGsGKSTLlr~i~g 53 (343)
T 3dhw_C 33 IYGVIGASGAGKSTLIRCVNL 53 (343)
T ss_dssp EEEEEESTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCHHHHHHHHHHC
T ss_conf 999999998349999999975
No 476
>1m7y_A ACC synthase, 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, pyridoxal phosphate, lyase; HET: PPG; 1.60A {Malus x domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1ynu_A* 1b8g_A*
Probab=29.05 E-value=21 Score=13.49 Aligned_cols=58 Identities=17% Similarity=0.173 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHCCCCC---CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHH
Q ss_conf 99999999987405655---5421012465025765978999999999998089966999808589999
Q gi|254781215|r 56 LEFMEVVDAHCLNSVNN---PNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLK 121 (511)
Q Consensus 56 ~e~l~~i~~~~~~~~~~---~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~~Q~~ 121 (511)
.++-++|+.+..+..+. -.|. .+.|.+ |=|. +..++..+++.|+-.|++.+|++....
T Consensus 89 ~~LR~aiA~~~~~~~g~~~~~~pe--~I~it~----Ga~~--al~~~~~~l~~~Gd~Vlv~~P~y~~~~ 149 (435)
T 1m7y_A 89 PAFKKAMVDFMAEIRGNKVTFDPN--HLVLTA----GATS--ANETFIFCLADPGEAVLIPTPYYPGFD 149 (435)
T ss_dssp HHHHHHHHHHHHHHTTTSSCCCGG--GEEEEE----HHHH--HHHHHHHHHCCTTCEEEEEESCCTTHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCCHH--EEEECC----CHHH--HHHHHHHHHCCCCCEEEEECCCCHHHH
T ss_conf 999999999999984899997830--099948----9999--999999997499898999189846378
No 477
>2ccj_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, ATP-binding; HET: TMP; 1.7A {Staphylococcus aureus} PDB: 2cck_A 2ccg_A*
Probab=29.02 E-value=21 Score=13.49 Aligned_cols=34 Identities=24% Similarity=0.173 Sum_probs=23.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEE-ECC
Q ss_conf 4650257659789999999999980899669998-085
Q gi|254781215|r 80 GAISAGRGIGKTTLNAWLVLWLMSTRPGISVICL-ANS 116 (511)
Q Consensus 80 ~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vt-Apt 116 (511)
+++-+.=|+|||+++..|.-++. .+-+++.+ -|.
T Consensus 5 I~ieG~dGsGKsT~~~~L~~~L~---~~~~v~~~~eP~ 39 (205)
T 2ccj_A 5 ITFEGPEGSGKTTVINEVYHRLV---KDYDVIMTREPG 39 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT---TTSCEEEEESST
T ss_pred EEEECCCCCHHHHHHHHHHHHHH---CCCCEEEEECCC
T ss_conf 99989988709999999999996---699889987899
No 478
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum 3D7}
Probab=28.97 E-value=21 Score=13.48 Aligned_cols=23 Identities=17% Similarity=0.273 Sum_probs=18.8
Q ss_pred CCCEEEEEECCCCCCHHHHHHHH
Q ss_conf 21012465025765978999999
Q gi|254781215|r 75 PEVFKGAISAGRGIGKTTLNAWL 97 (511)
Q Consensus 75 ~~~~r~aV~sgrG~GKS~l~a~l 97 (511)
|..+.|++..--++|||+|+..+
T Consensus 27 ~~~~~V~lvG~~nvGKSSLln~L 49 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIV 49 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHH
T ss_conf 99999999999998599999998
No 479
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=28.80 E-value=21 Score=13.47 Aligned_cols=20 Identities=20% Similarity=0.104 Sum_probs=15.2
Q ss_pred EEEECCCCCCHHHHHHHHHH
Q ss_conf 46502576597899999999
Q gi|254781215|r 80 GAISAGRGIGKTTLNAWLVL 99 (511)
Q Consensus 80 ~aV~sgrG~GKS~l~a~l~l 99 (511)
+.+.+.=|+|||+++..++-
T Consensus 5 Iil~G~pGSGKST~a~~L~~ 24 (301)
T 1ltq_A 5 ILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999899979999999998
No 480
>3meb_A Aspartate aminotransferase; pyridoxal phosphate, structural genomics, seattle structural genomics center for infectious disease; HET: PLP; 1.90A {Giardia lamblia atcc 50803}
Probab=28.73 E-value=21 Score=13.46 Aligned_cols=64 Identities=9% Similarity=-0.079 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHH
Q ss_conf 9999999999874056555421012465025765978999999999998089966999808589999
Q gi|254781215|r 55 QLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLK 121 (511)
Q Consensus 55 Q~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~~Q~~ 121 (511)
-.++.+++++............-.-+.+. +.|.+...+..+.......|+..|++..|++.--.
T Consensus 96 ~~~lreav~~~~~~~~~~~~~~~~~~~~~---~~g~~~~~~l~~~~~~~~~pg~~v~ip~P~~~~y~ 159 (448)
T 3meb_A 96 FPLFLEAAQFLMFGKDSKAAQEGRIASCQ---SLSGTGSLHIGFEFLHLWMPKAEFYMPSTTWPNHY 159 (448)
T ss_dssp CHHHHHHHHHHHHCTTCHHHHTTCEEEEE---ESHHHHHHHHHHHHHHHHCTTCCEEEESSCCTHHH
T ss_pred CHHHHHHHHHHHHCCCCCCCCCCCEEEEE---CCCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHH
T ss_conf 79999999999741457533345057852---54047899999999864289998999388976389
No 481
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=28.72 E-value=21 Score=13.46 Aligned_cols=23 Identities=26% Similarity=0.107 Sum_probs=16.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 46502576597899999999999
Q gi|254781215|r 80 GAISAGRGIGKTTLNAWLVLWLM 102 (511)
Q Consensus 80 ~aV~sgrG~GKS~l~a~l~lw~l 102 (511)
+-+..--|+|||+++..|.--..
T Consensus 28 IwltGlsGSGKTTiA~~L~~~L~ 50 (211)
T 1m7g_A 28 IWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99989999988999999999999
No 482
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=28.69 E-value=21 Score=13.45 Aligned_cols=22 Identities=18% Similarity=0.058 Sum_probs=15.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHH
Q ss_conf 1246502576597899999999
Q gi|254781215|r 78 FKGAISAGRGIGKTTLNAWLVL 99 (511)
Q Consensus 78 ~r~aV~sgrG~GKS~l~a~l~l 99 (511)
..+-.-...|+|||.++..++-
T Consensus 168 rgiLL~GPPGtGKT~lakaiA~ 189 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLAKAVAT 189 (444)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHH
T ss_conf 7147779899978999999998
No 483
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 2zi3_A* ...
Probab=28.60 E-value=18 Score=13.90 Aligned_cols=26 Identities=23% Similarity=0.161 Sum_probs=21.0
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 10124650257659789999999999
Q gi|254781215|r 76 EVFKGAISAGRGIGKTTLNAWLVLWL 101 (511)
Q Consensus 76 ~~~r~aV~sgrG~GKS~l~a~l~lw~ 101 (511)
.+..++|-++=|+|||+++..|.-++
T Consensus 23 ~~k~I~IeG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99989998998885999999999997
No 484
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=28.59 E-value=21 Score=13.44 Aligned_cols=57 Identities=11% Similarity=-0.057 Sum_probs=35.7
Q ss_pred CCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 34467467888999870706665288667764214557775655578458999999999998740565554
Q gi|254781215|r 4 ELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPN 74 (511)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~P~~WQ~e~l~~i~~~~~~~~~~~~ 74 (511)
-+++|.+-|+.+.--+..++-. |.... . .-+.|.-| =-+.|.+.|.+...++..-+.
T Consensus 10 ~~~~n~eaE~avLg~lL~~~~~-----~~~i~----L---~~e~F~~~--~h~~If~~i~~l~~~~~~id~ 66 (444)
T 3bgw_A 10 VMLYNEYAEQAVLGSILTEPEL-----IKECP----L---TPEHFSPG--KHFNIYFTMQDLDRKGQSVDF 66 (444)
T ss_dssp ----CHHHHHHHHHHHHHSTTH-----HHHSC----C---CGGGSCTT--HHHHHHHHHHHHHHTTCCCSH
T ss_pred CCCCCHHHHHHHHHHHHCCHHH-----HHHCE----E---CHHHCCCH--HHHHHHHHHHHHHHCCCCCCH
T ss_conf 7889999999999999869645-----65400----0---87888897--999999999999976999999
No 485
>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI, protein structure initiative, joint center for structural genomics, JCSG; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1
Probab=28.54 E-value=21 Score=13.44 Aligned_cols=59 Identities=17% Similarity=0.239 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHCCCCCC-CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHH
Q ss_conf 999999999874056555-4210124650257659789999999999980899669998085899999
Q gi|254781215|r 56 LEFMEVVDAHCLNSVNNP-NPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKT 122 (511)
Q Consensus 56 ~e~l~~i~~~~~~~~~~~-~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~~Q~~~ 122 (511)
.++-++|+++..+..+.+ .|. .+.|.+| =+ .+..++..+++.++..|++..|++.....
T Consensus 82 ~~LR~aia~~~~~~~g~~~~~e--~Iiit~G----s~--~~l~~~~~~~~~~gd~vl~~~p~y~~~~~ 141 (409)
T 2gb3_A 82 WELREAFASYYKRRQRVDVKPE--NVLVTNG----GS--EAILFSFAVIANPGDEILVLEPFYANYNA 141 (409)
T ss_dssp HHHHHHHHHHHHHTSCCCCCGG--GEEEESH----HH--HHHHHHHHHHCCTTCEEEEEESCCTHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCHH--EEEEECC----HH--HHHHHHHHHCCCCCCEEEECCCCCCCCCC
T ss_conf 9999999999989848998810--0999488----03--88889987416899989978986531100
No 486
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, ATP-binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus VF5}
Probab=28.38 E-value=21 Score=13.42 Aligned_cols=33 Identities=30% Similarity=0.187 Sum_probs=23.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 46502576597899999999999808996699980
Q gi|254781215|r 80 GAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLA 114 (511)
Q Consensus 80 ~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtA 114 (511)
+++.++=|+|||+++..|.-++-.. +-.+.++.
T Consensus 3 I~ieG~~GsGKsT~~~~L~~~L~~~--g~~v~~~~ 35 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYEYLKQK--GYFVSLYR 35 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHT--TCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC--CCCEEEEE
T ss_conf 9998899898999999999999877--99489986
No 487
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=28.08 E-value=22 Score=13.39 Aligned_cols=21 Identities=29% Similarity=0.131 Sum_probs=18.2
Q ss_pred EEEEEECCCCCCHHHHHHHHH
Q ss_conf 124650257659789999999
Q gi|254781215|r 78 FKGAISAGRGIGKTTLNAWLV 98 (511)
Q Consensus 78 ~r~aV~sgrG~GKS~l~a~l~ 98 (511)
.|+.+...-++|||++...++
T Consensus 17 ~kI~liG~~~~GKTsli~~l~ 37 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFS 37 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
T ss_conf 799999999988799999997
No 488
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=28.06 E-value=22 Score=13.39 Aligned_cols=43 Identities=28% Similarity=0.336 Sum_probs=27.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHH--------HCCCCEEEEEEC--CHHHHH
Q ss_conf 2465025765978999999999998--------089966999808--589999
Q gi|254781215|r 79 KGAISAGRGIGKTTLNAWLVLWLMS--------TRPGISVICLAN--SETQLK 121 (511)
Q Consensus 79 r~aV~sgrG~GKS~l~a~l~lw~l~--------~~p~~kv~vtAp--t~~Q~~ 121 (511)
-+.|.+.-|+|||+++..+++-.+. +.++.+|++... +..+++
T Consensus 32 ~~~i~G~~G~GKS~l~l~la~~ia~g~~~~~~~~~~~~~Vlyi~~E~~~~~i~ 84 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPPTAIH 84 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSCHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCHHHHH
T ss_conf 89998089898999999999999759963464334786379983567899999
No 489
>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1
Probab=27.88 E-value=22 Score=13.36 Aligned_cols=64 Identities=6% Similarity=-0.106 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHH
Q ss_conf 9999999999874056555421012465025765978999999999998089966999808589999
Q gi|254781215|r 55 QLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLK 121 (511)
Q Consensus 55 Q~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~~Q~~ 121 (511)
-.++.++|+++..+......... ++.+.. ..|-+...+..+.......|+-.|++..|++.--.
T Consensus 75 ~~~lreaia~~~~~~~~~~~~~~-~~~~~~--t~g~~~~~~~~~~~~~~~~~gd~Vlip~P~y~~y~ 138 (412)
T 1yaa_A 75 LPSLTSNAAKIIFGTQSDALQED-RVISVQ--SLSGTGALHISAKFFSKFFPDKLVYLSKPTWANHM 138 (412)
T ss_dssp CHHHHHHHHHHHHCTTCHHHHTT-CEEEEE--EEHHHHHHHHHHHHHHHHCTTCCEEEEESCCTTHH
T ss_pred CHHHHHHHHHHHHHHCCCCCCCC-CEEEEE--CCCHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHH
T ss_conf 79999999999863158765456-068860--57277899999998751599998998279856479
No 490
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=27.52 E-value=22 Score=13.32 Aligned_cols=21 Identities=24% Similarity=0.113 Sum_probs=16.5
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 246502576597899999999
Q gi|254781215|r 79 KGAISAGRGIGKTTLNAWLVL 99 (511)
Q Consensus 79 r~aV~sgrG~GKS~l~a~l~l 99 (511)
-+++...-|.|||++.-.++-
T Consensus 28 ~~~l~GpsGsGKSTll~~iaG 48 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAG 48 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHT
T ss_pred EEEEECCCCCHHHHHHHHHHC
T ss_conf 999999999749999999975
No 491
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, alternative splicing, ATP-binding, hydrolase, magnesium; HET: ADP; 2.00A {Homo sapiens}
Probab=27.17 E-value=22 Score=13.29 Aligned_cols=55 Identities=11% Similarity=0.084 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHCCCCC----CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 999999999987405655----5421012465025765978999999999998089966999808
Q gi|254781215|r 55 QLEFMEVVDAHCLNSVNN----PNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLAN 115 (511)
Q Consensus 55 Q~e~l~~i~~~~~~~~~~----~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtAp 115 (511)
+++.|+++-......... ..| ...+......|+|||.++-.++-- -+...+.+..
T Consensus 92 ~k~~l~e~v~~pl~~p~~f~~~~~p-p~GvLL~GPPGtGKT~lakaiA~e-----~g~~~~~i~~ 150 (357)
T 3d8b_A 92 AKATIKEIVVWPMLRPDIFTGLRGP-PKGILLFGPPGTGKTLIGKCIASQ-----SGATFFSISA 150 (357)
T ss_dssp HHHHHHHHTHHHHHCTTTSCGGGSC-CSEEEEESSTTSSHHHHHHHHHHH-----TTCEEEEEEG
T ss_pred HHHHHHHHHHHHHHCHHHHHHCCCC-CCEEEEECCCCCCHHHHHHHHHHC-----CCCCEEEEEH
T ss_conf 9999999999997499989746999-845887797998799999999842-----2898599406
No 492
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=27.15 E-value=22 Score=13.28 Aligned_cols=22 Identities=27% Similarity=0.371 Sum_probs=18.7
Q ss_pred CEEEEEECCCCCCHHHHHHHHH
Q ss_conf 0124650257659789999999
Q gi|254781215|r 77 VFKGAISAGRGIGKTTLNAWLV 98 (511)
Q Consensus 77 ~~r~aV~sgrG~GKS~l~a~l~ 98 (511)
.++++|..-.++|||++.-.+.
T Consensus 69 ~l~iai~G~~n~GKSsliN~l~ 90 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLR 90 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
T ss_conf 7269998899987999999984
No 493
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=26.70 E-value=23 Score=13.23 Aligned_cols=20 Identities=25% Similarity=0.253 Sum_probs=14.8
Q ss_pred EEEECCCCCCHHHHHHHHHH
Q ss_conf 46502576597899999999
Q gi|254781215|r 80 GAISAGRGIGKTTLNAWLVL 99 (511)
Q Consensus 80 ~aV~sgrG~GKS~l~a~l~l 99 (511)
+.+..+-|+|||+++..|+-
T Consensus 23 ivi~GpsGsGK~Tl~~~L~~ 42 (207)
T 1znw_A 23 VVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99989898899999999996
No 494
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=26.68 E-value=23 Score=13.23 Aligned_cols=21 Identities=29% Similarity=0.221 Sum_probs=17.9
Q ss_pred EEEEEECCCCCCHHHHHHHHH
Q ss_conf 124650257659789999999
Q gi|254781215|r 78 FKGAISAGRGIGKTTLNAWLV 98 (511)
Q Consensus 78 ~r~aV~sgrG~GKS~l~a~l~ 98 (511)
.++++...-++|||+|...+.
T Consensus 13 ~~i~ivG~~n~GKSsLin~l~ 33 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLT 33 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
T ss_conf 699999999999999999996
No 495
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=26.36 E-value=23 Score=13.19 Aligned_cols=21 Identities=24% Similarity=0.007 Sum_probs=17.6
Q ss_pred EEEEEECCCCCCHHHHHHHHH
Q ss_conf 124650257659789999999
Q gi|254781215|r 78 FKGAISAGRGIGKTTLNAWLV 98 (511)
Q Consensus 78 ~r~aV~sgrG~GKS~l~a~l~ 98 (511)
.+|++...-++|||+|.-.+.
T Consensus 8 ~~I~ivG~~~~GKTsLl~~l~ 28 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLL 28 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
T ss_conf 989999899988899999997
No 496
>2cb5_A Protein (bleomycin hydrolase); aminopeptidase, cysteine protease, SELF- compartmentalizing, cylinase; 1.85A {Homo sapiens} SCOP: d.3.1.1 PDB: 1cb5_A
Probab=26.30 E-value=23 Score=13.19 Aligned_cols=54 Identities=11% Similarity=0.212 Sum_probs=0.0
Q ss_pred HHHHHCCCCCCCCCCEEE--CHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCEEEE
Q ss_conf 544431756666787375--59999886407653189970899962333478417999
Q gi|254781215|r 280 TRVEVCGQFPQQDIDSFI--PLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVV 335 (511)
Q Consensus 280 ~r~evlgeFp~~~~~~~i--~~~~ie~a~~r~~~~~~~~~~viGvDVAr~G~D~svi~ 335 (511)
|.+++++.........+. |.+.+.+++..-+ ..+.|+.+|+||..+.+-+..+.
T Consensus 283 y~v~~~~Nv~~g~~~~y~Nvp~d~L~~~~~~sL--~~G~pVwfgcDV~~~~~~k~Gi~ 338 (453)
T 2cb5_A 283 YTVEYLSNMVGGRKTLYNNQPIDFLKKMVAASI--KDGEAVWFGCDVGKHFNSKLGLS 338 (453)
T ss_dssp EEETTCCSSTTCCCCCEEECCHHHHHHHHHHHH--HTTCCEEEEECTTTTEETTTTEE
T ss_pred EEECCCCCCCCCCCCEEECCCHHHHHHHHHHHH--HCCCCEEEECCCCCCCCCCCCCC
T ss_conf 775566664588040474069999999999999--76993899556542245234737
No 497
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, infectious diseases, center for structural genomics of infectious diseases; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=26.27 E-value=23 Score=13.18 Aligned_cols=50 Identities=24% Similarity=0.054 Sum_probs=0.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH
Q ss_conf 46502576597899999999999808996699980858999999999999
Q gi|254781215|r 80 GAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVS 129 (511)
Q Consensus 80 ~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~~Q~~~ilw~Ei~ 129 (511)
++|-..=|+|||+++..|.-++-...-...+.+--|......+.+...+.
T Consensus 30 IvieG~dGsGKSTq~~~L~~~L~~~g~~~~~~~~ep~~~~~~~~~~~~~~ 79 (236)
T 3lv8_A 30 IVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTREPGGTLLAEKLRALVK 79 (236)
T ss_dssp EEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHH
T ss_conf 99989998849999999999999669985998249899824899999985
No 498
>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 2.19A {Helicobacter pylori 26695}
Probab=26.15 E-value=14 Score=14.59 Aligned_cols=108 Identities=17% Similarity=0.003 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 65978999999999998089966999808589999999999999998550001344432222223334443211123578
Q gi|254781215|r 87 GIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDS 166 (511)
Q Consensus 87 G~GKS~l~a~l~lw~l~~~p~~kv~vtApt~~Q~~~ilw~Ei~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (511)
..|=+.....++....++.++..|++-.|++...... ..................................+-...++
T Consensus 88 t~G~~~al~~i~~~~~~~~~~~~Vl~p~P~y~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~il~nP~N 165 (376)
T 3ezs_A 88 TLGSREVLFNFPSFVLFDYQNPTIAYPNPFYQIYEGA--AKFIKAKSLLMPLTKENDFTPSLNEKELQEVDLVILNSPNN 165 (376)
T ss_dssp ESSSHHHHHHHHHHHTTTCSSCEEEEEESCCTHHHHH--HHHTTCEEEEEECCGGGTSCCCCCHHHHHHCSEEEECSSCT
T ss_pred CCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHH--HHHCCCEEEECCCCCCCCCCCHHHHHHCCCCCEEEECCCCC
T ss_conf 4787999999999986247999899788746203667--87627604512543345443037887506873899899979
Q ss_pred CEEEEEECCCCCCCCCHHHHCCCCCCEEEEECCH
Q ss_conf 6169853035755610021202676149997111
Q gi|254781215|r 167 KHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEA 200 (511)
Q Consensus 167 ~~~~~~~~~~s~~~~ea~~G~h~~~~~lvI~DEA 200 (511)
- +|..++.+.-..+.-+-.++.+++|.||+
T Consensus 166 P----tG~~~s~~~l~~i~~~~~~~~~~ii~De~ 195 (376)
T 3ezs_A 166 P----TGRTLSLEELISWVKLALKHDFILINDEC 195 (376)
T ss_dssp T----TCCCCCHHHHHHHHHHHHHHTCEEEEECT
T ss_pred C----CCCCCCHHHHHHHHHHCCCCCEEEEEECC
T ss_conf 8----77453077899998622156748994276
No 499
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=26.12 E-value=23 Score=13.17 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=0.0
Q ss_pred CCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 10124650257659789999999
Q gi|254781215|r 76 EVFKGAISAGRGIGKTTLNAWLV 98 (511)
Q Consensus 76 ~~~r~aV~sgrG~GKS~l~a~l~ 98 (511)
..+|+.+..--|+|||.++..++
T Consensus 7 y~~KvvlvGd~~VGKTsl~~r~~ 29 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFS 29 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEEEECCCCCCHHHHHHHHH
T ss_conf 89899999999979999999996
No 500
>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}
Probab=25.92 E-value=24 Score=13.14 Aligned_cols=136 Identities=15% Similarity=0.014 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCH
Q ss_conf 99999999874056555421012465025765978999999999998089966999808589999999999999998550
Q gi|254781215|r 57 EFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLP 136 (511)
Q Consensus 57 e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~~Q~~~ilw~Ei~k~~~~~~ 136 (511)
++.++|+++..+..+......-.|.|..| ...+..++-.+++.|+..|++..|++......+-.--.+......
T Consensus 89 ~lR~aia~~~~~~~~~~~~~~~~I~it~G------~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~g~~~v~~~~ 162 (404)
T 2o1b_A 89 AFKQAIVDFYQRQYNVTLDKEDEVCILYG------TKNGLVAVPTCVINPGDYVLLPDPGYTDYLAGVLLADGKPVPLNL 162 (404)
T ss_dssp HHHHHHHHHHHHHHCCCCCTTTSEEEESS------HHHHHHHHHHHHCCTTCEEEEEESCCSSHHHHHHHTTCEEEEEEC
T ss_pred HHHHHHHHHHHHHCCCCCCCCCEEEEECC------HHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHCCCEEEEEEC
T ss_conf 99999999999864999996557999168------799999999983689998998578740688999975947996412
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHCCCCCCEEEEECCHHC
Q ss_conf 001344432222223334443211123578616985303575561002120267614999711102
Q gi|254781215|r 137 NKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASG 202 (511)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ea~~G~h~~~~~lvI~DEAsg 202 (511)
.......................+....++- ++..++...-..+.-+-..+.++++.||+..
T Consensus 163 ~~~~~~~d~~~~~~~~~~~~~~i~l~~p~NP----tG~~~s~~~~~~l~~~~~~~~~~vi~D~~y~ 224 (404)
T 2o1b_A 163 EPPHYLPDWSKVDSQIIDKTKLIYLTYPNNP----TGSTATKEVFDEAIAKFKGTDTKIVHDFAYG 224 (404)
T ss_dssp CTTTCCCCGGGSCHHHHHHEEEEEECSSCTT----TCCCCCHHHHHHHHHHHTTSSCEEEEECTTT
T ss_pred CCCCCCCCHHHHHHHHCCCCCEEEECCCCCC----CCEEECHHHHHHHHHHHCCCCCEEEEEEEEE
T ss_conf 5876667889985331145604765798588----8733206777678876325772488776515
Done!