BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254781215|ref|YP_003065628.1| putative phage terminase,
large subunit [Candidatus Liberibacter asiaticus str. psy62]
(511 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254781215|ref|YP_003065628.1| putative phage terminase, large subunit [Candidatus Liberibacter
asiaticus str. psy62]
Length = 511
Score = 1066 bits (2757), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 511/511 (100%), Positives = 511/511 (100%)
Query: 1 MSRELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFME 60
MSRELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFME
Sbjct: 1 MSRELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFME 60
Query: 61 VVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQL 120
VVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQL
Sbjct: 61 VVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQL 120
Query: 121 KTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEER 180
KTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEER
Sbjct: 121 KTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEER 180
Query: 181 PDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEI 240
PDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEI
Sbjct: 181 PDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEI 240
Query: 241 FNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLN 300
FNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLN
Sbjct: 241 FNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLN 300
Query: 301 IIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKI 360
IIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKI
Sbjct: 301 IIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKI 360
Query: 361 SGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKM 420
SGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKM
Sbjct: 361 SGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKM 420
Query: 421 ADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENP 480
ADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENP
Sbjct: 421 ADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENP 480
Query: 481 PRSDMDFGRCPSYQYEGVDLLIERRFEYDSR 511
PRSDMDFGRCPSYQYEGVDLLIERRFEYDSR
Sbjct: 481 PRSDMDFGRCPSYQYEGVDLLIERRFEYDSR 511
>gi|254781187|ref|YP_003065600.1| putative phage terminase, large subunit [Candidatus Liberibacter
asiaticus str. psy62]
Length = 367
Score = 545 bits (1403), Expect = e-156, Method: Compositional matrix adjust.
Identities = 252/359 (70%), Positives = 299/359 (83%)
Query: 1 MSRELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFME 60
M R + T+ + EQ+L +++ E LSF NFV+ FFPWG KG PLE FS P WQLEFME
Sbjct: 1 MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60
Query: 61 VVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQL 120
VD HC ++VNN NP +FK AISAGRGIGKTTLNAW++LWL+STRPG+S+IC+ANSETQL
Sbjct: 61 AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120
Query: 121 KTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEER 180
K TLWAEVSKWLS+LP++HWFEMQSLSLHP+ WY+++L S+GIDSKHY+ CRTYSEER
Sbjct: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180
Query: 181 PDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEI 240
PDTFVG HNT+GMA+ NDEASGTPD+IN ILGF TE N NRFWIMTSN RRL+G FY+I
Sbjct: 181 PDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDI 240
Query: 241 FNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLN 300
FN PL+DWKR+QIDTRTVEGID FHEGII+RYGLDSDV R+E+ GQFPQQ++++FIP N
Sbjct: 241 FNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN 300
Query: 301 IIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNK 359
IEEA++RE D YAPLIMGCDIA EGGD TVVV RRG +IEH+FDWS ++ TN +
Sbjct: 301 YIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQE 359
>gi|254781186|ref|YP_003065599.1| hypothetical protein CLIBASIA_05465 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 45
Score = 42.4 bits (98), Expect = 2e-05, Method: Composition-based stats.
Identities = 19/43 (44%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 363 LVEKYRPDAIIIDANNTGARTCDYLEMLGYH-VYRVLGQKRAV 404
+ +Y PDAI++ AN GA T +YLE L Y + ++LGQ+ +V
Sbjct: 1 MAHQYNPDAIVLYANGIGAVTANYLENLNYSPIEKILGQRSSV 43
>gi|254780273|ref|YP_003064686.1| putative ABC transporter ATP-binding protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 539
Score = 26.9 bits (58), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 287 QFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIM 320
Q PQ D+ + NIIE +++ D Y L+M
Sbjct: 76 QEPQLDLSKTVKENIIEGVAHKQAILDRYNELMM 109
>gi|254780291|ref|YP_003064704.1| hypothetical protein CLIBASIA_00880 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 475
Score = 26.2 bits (56), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 8/37 (21%)
Query: 303 EEALNREPCPDPY--APLIMGC------DIAEEGGDN 331
+E + PC DPY P I GC DI+++ D+
Sbjct: 228 QEYIGNRPCRDPYTLTPSIYGCAFIAINDISQQINDH 264
>gi|254780185|ref|YP_003064598.1| glutamine synthetase protein [Candidatus Liberibacter asiaticus
str. psy62]
Length = 458
Score = 25.4 bits (54), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 274 GLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDI 324
LD D ++V F ID+FI L ++E L E P P M C I
Sbjct: 410 NLDKDREFLKVGNVFDDDQIDAFINLK-MKEVLKLESSPSP-VEFEMYCSI 458
>gi|254781113|ref|YP_003065526.1| amino acid ABC transporter (permease) [Candidatus Liberibacter
asiaticus str. psy62]
Length = 226
Score = 25.0 bits (53), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 4/28 (14%)
Query: 18 LMWSDEIKLSFSNFVLHFFPWGEKGTPL 45
+ +SD I + ++HF+ W +GTPL
Sbjct: 47 IFFSDTII----SLIMHFYVWIFRGTPL 70
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.320 0.137 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 347,280
Number of Sequences: 1233
Number of extensions: 15106
Number of successful extensions: 34
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 29
Number of HSP's gapped (non-prelim): 8
length of query: 511
length of database: 328,796
effective HSP length: 78
effective length of query: 433
effective length of database: 232,622
effective search space: 100725326
effective search space used: 100725326
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 40 (20.0 bits)