Query gi|254781216|ref|YP_003065629.1| hypothetical protein CLIBASIA_05615 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 38
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 23785
Date Wed Jun 1 01:47:24 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781216.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vdf_A OPCA, outer membrane pr 28.7 20 0.00083 17.6 1.6 13 19-31 211-223 (253)
2 3mb2_B 4-oxalocrotonate tautom 11.1 95 0.004 14.4 1.8 30 7-36 27-59 (72)
3 2qa0_A Capsid protein; beta-ba 9.4 89 0.0037 14.6 1.1 17 11-27 422-438 (519)
4 1k3v_A Capsid protein VP2; ico 9.2 1.1E+02 0.0044 14.2 1.4 14 11-24 486-499 (579)
5 2g8g_A Capsid; adeno-associate 8.8 1.1E+02 0.0046 14.2 1.4 16 11-26 427-442 (524)
6 2w7a_A LINE-1 ORF1P; RNA-bindi 8.7 60 0.0025 15.4 0.0 23 12-34 58-80 (100)
7 4dpv_Z Protein (parvovirus coa 8.6 1E+02 0.0043 14.3 1.2 16 11-26 490-505 (584)
8 2c0g_A ERP29 homolog, windbeut 7.9 1.5E+02 0.0063 13.5 1.8 21 5-25 22-42 (248)
9 3kic_A Capsid protein VP1; par 7.2 1.3E+02 0.0053 13.9 1.1 13 14-26 642-654 (736)
10 1bml_C Streptokinase; human pl 7.2 65 0.0027 15.2 -0.4 21 14-34 17-37 (362)
No 1
>2vdf_A OPCA, outer membrane protein; invasin, adhesin, beta barrel; 1.95A {Neisseria meningitidis} SCOP: f.4.4.2 PDB: 1k24_A
Probab=28.68 E-value=20 Score=17.65 Aligned_cols=13 Identities=31% Similarity=0.256 Sum_probs=10.7
Q ss_pred EEEEEEECCCCCE
Q ss_conf 8999982244301
Q gi|254781216|r 19 IFIKFWNIEESSA 31 (38)
Q Consensus 19 ifikfwnieessa 31 (38)
-|.++|+|++|..
T Consensus 211 PfyRyW~Ik~S~~ 223 (253)
T 2vdf_A 211 PFYKQRTYKESGE 223 (253)
T ss_dssp EEEEEEEECCCCC
T ss_pred EEEEEEEECCCCC
T ss_conf 0267644226764
No 2
>3mb2_B 4-oxalocrotonate tautomerase family enzyme - beta; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, hydrolase; 2.41A {Chloroflexus aurantiacus j-10-fl}
Probab=11.12 E-value=95 Score=14.44 Aligned_cols=30 Identities=30% Similarity=0.547 Sum_probs=21.8
Q ss_pred CCCCCCCCCCCE---EEEEEEECCCCCEEECCC
Q ss_conf 650201169985---899998224430110036
Q gi|254781216|r 7 TNFKGYIGTPPT---IFIKFWNIEESSAILHNN 36 (38)
Q Consensus 7 tnfkgyigtppt---ifikfwnieessailhnn 36 (38)
+-|.-.|||||- .+|.--.-|+|-++|...
T Consensus 27 aIFq~VlGTPpGRLrl~i~~l~pedsL~ll~d~ 59 (72)
T 3mb2_B 27 AIFQRVIGTPPGRLQLIIQIVSPENTLAVIDLD 59 (72)
T ss_dssp HHHHHHHCCCTTCCEEEEEECCGGGSGGGGGCC
T ss_pred HHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCC
T ss_conf 999998479986168898874654320103478
No 3
>2qa0_A Capsid protein; beta-barrel, icosahedral virus; 2.60A {Adeno-associated virus - 8} PDB: 1lp3_A
Probab=9.37 E-value=89 Score=14.57 Aligned_cols=17 Identities=35% Similarity=0.524 Sum_probs=11.2
Q ss_pred CCCCCCCEEEEEEEECC
Q ss_conf 01169985899998224
Q gi|254781216|r 11 GYIGTPPTIFIKFWNIE 27 (38)
Q Consensus 11 gyigtpptifikfwnie 27 (38)
|----||+||||.-.+-
T Consensus 422 gm~~PPpqIFIK~~P~P 438 (519)
T 2qa0_A 422 GLKHPPPQILIKNTPVP 438 (519)
T ss_dssp EESSCSCCEEEEECCCB
T ss_pred CCCCCCCEEEEECCCCC
T ss_conf 16899983799667768
No 4
>1k3v_A Capsid protein VP2; icosahadral, beta sheet, icosahedral virus; 3.50A {Porcine parvovirus} SCOP: b.121.5.2
Probab=9.16 E-value=1.1e+02 Score=14.23 Aligned_cols=14 Identities=21% Similarity=0.313 Sum_probs=9.6
Q ss_pred CCCCCCCEEEEEEE
Q ss_conf 01169985899998
Q gi|254781216|r 11 GYIGTPPTIFIKFW 24 (38)
Q Consensus 11 gyigtpptifikfw 24 (38)
|----||+||||.-
T Consensus 486 gm~~PPpqIFIKla 499 (579)
T 1k3v_A 486 CKNNPPGQLFVKIA 499 (579)
T ss_dssp CSSCCCCEEEEEEC
T ss_pred CCCCCCCEEEEECC
T ss_conf 25799986899757
No 5
>2g8g_A Capsid; adeno-associated virus serotype 4, gene therapy, icosahedral virus; HET: D5M; 3.20A {Adeno-associated virus - 4}
Probab=8.76 E-value=1.1e+02 Score=14.15 Aligned_cols=16 Identities=44% Similarity=0.671 Sum_probs=10.7
Q ss_pred CCCCCCCEEEEEEEEC
Q ss_conf 0116998589999822
Q gi|254781216|r 11 GYIGTPPTIFIKFWNI 26 (38)
Q Consensus 11 gyigtpptifikfwni 26 (38)
|----||+||||.-.+
T Consensus 427 ~m~~PPpqIFIK~~P~ 442 (524)
T 2g8g_A 427 GLKHPPPQIFIKNTPV 442 (524)
T ss_dssp EESSCSCEEEEEECCC
T ss_pred CCCCCCCEEEEECCCC
T ss_conf 1689998479965777
No 6
>2w7a_A LINE-1 ORF1P; RNA-binding protein; HET: MSE; 1.40A {Homo sapiens}
Probab=8.72 E-value=60 Score=15.38 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=18.0
Q ss_pred CCCCCCEEEEEEEECCCCCEEEC
Q ss_conf 11699858999982244301100
Q gi|254781216|r 12 YIGTPPTIFIKFWNIEESSAILH 34 (38)
Q Consensus 12 yigtpptifikfwnieessailh 34 (38)
.-.+|-+|.+||.+...-..||.
T Consensus 58 k~~~PR~IIvkf~~~~~Ke~iLk 80 (100)
T 2w7a_A 58 RRATPRHIIVRFTKVEMKEKMLR 80 (100)
T ss_dssp SCCSCCEEEEEESCHHHHHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHH
T ss_conf 77865409997033255899999
No 7
>4dpv_Z Protein (parvovirus coat protein); complex (virus/DNA), FULL capsid, single-stranded DNA, icosahedral virus; HET: DNA; 2.90A {Canine parvovirus} SCOP: b.121.5.2 PDB: 1c8h_A* 1c8d_A 1ijs_P* 1fpv_A 2cas_A 1p5w_A* 1p5y_A 1c8e_A 1c8f_A 1c8g_A
Probab=8.60 E-value=1e+02 Score=14.29 Aligned_cols=16 Identities=19% Similarity=0.175 Sum_probs=10.5
Q ss_pred CCCCCCCEEEEEEEEC
Q ss_conf 0116998589999822
Q gi|254781216|r 11 GYIGTPPTIFIKFWNI 26 (38)
Q Consensus 11 gyigtpptifikfwni 26 (38)
|----||+||||.-.+
T Consensus 490 gm~~PPpqIFIKl~Pv 505 (584)
T 4dpv_Z 490 CQNNCPGQLFVKVAPN 505 (584)
T ss_dssp ESSCCCCCEEEEECCC
T ss_pred CCCCCCCEEEEECCCC
T ss_conf 0589998489966787
No 8
>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A
Probab=7.87 E-value=1.5e+02 Score=13.51 Aligned_cols=21 Identities=24% Similarity=0.245 Sum_probs=16.8
Q ss_pred CCCCCCCCCCCCCEEEEEEEE
Q ss_conf 856502011699858999982
Q gi|254781216|r 5 PETNFKGYIGTPPTIFIKFWN 25 (38)
Q Consensus 5 petnfkgyigtpptifikfwn 25 (38)
-+.||.-.|...+.++++||.
T Consensus 22 ~~~nFd~~v~~~~~vlV~F~a 42 (248)
T 2c0g_A 22 DELSFEKTVERFPYSVVKFDI 42 (248)
T ss_dssp CTTTHHHHHTTSSEEEEEEEE
T ss_pred CCHHHHHHHHCCCCEEEEEEC
T ss_conf 703589998439978999807
No 9
>3kic_A Capsid protein VP1; parvovirus, icosahedral virus, beta barrel, S stranded, dependovirus; HET: D5M; 2.60A {Adeno-associated virus 3B} PDB: 3kie_A*
Probab=7.23 E-value=1.3e+02 Score=13.87 Aligned_cols=13 Identities=38% Similarity=0.572 Sum_probs=8.8
Q ss_pred CCCCEEEEEEEEC
Q ss_conf 6998589999822
Q gi|254781216|r 14 GTPPTIFIKFWNI 26 (38)
Q Consensus 14 gtpptifikfwni 26 (38)
--||+||||.--+
T Consensus 642 ~PPpqIFIK~~P~ 654 (736)
T 3kic_A 642 HPPPQIMIKNTPV 654 (736)
T ss_dssp SCSCCEEEEECCC
T ss_pred CCCCEEEEECCCC
T ss_conf 9998078966777
No 10
>1bml_C Streptokinase; human plasmin, blood clotting; 2.90A {Streptococcus dysgalactiae subsp} SCOP: d.15.5.1 d.15.5.1 d.15.5.1
Probab=7.21 E-value=65 Score=15.21 Aligned_cols=21 Identities=38% Similarity=0.570 Sum_probs=0.0
Q ss_pred CCCCEEEEEEEECCCCCEEEC
Q ss_conf 699858999982244301100
Q gi|254781216|r 14 GTPPTIFIKFWNIEESSAILH 34 (38)
Q Consensus 14 gtpptifikfwnieessailh 34 (38)
||--.|+|||..|.-.|++.|
T Consensus 17 ~t~~~~~i~~~~~dl~s~~~h 37 (362)
T 1bml_C 17 GTNQDISLKFFEIDLTSRPAH 37 (362)
T ss_dssp SSCCEECCCCCEEECCCCC--
T ss_pred CCCCEEEEEEEEEECCCCCCC
T ss_conf 578479999987503455444
Done!