HHsearch alignment for GI: 254781217 and conserved domain: pfam04218
>pfam04218 CENP-B_N CENP-B N-terminal DNA-binding domain. Centromere Protein B (CENP-B) is a DNA-binding protein localized to the centromere. Within the N-terminal 125 residues, there is a DNA-binding region, which binds to a corresponding 17bp CENP-B box sequence. CENP-B dimers either bind two separate DNA molecules or alternatively, they may bind two CENP-B boxes on one DNA molecule, with the intervening stretch of DNA forming a loop structure. The CENP-B DNA-binding domain consists of two repeating domains, RP1 and RP2. This family corresponds to RP1 has been shown to consist of four helices in a helix-turn-helix structure.
Probab=94.55 E-value=0.074 Score=33.28 Aligned_cols=45 Identities=18% Similarity=0.205 Sum_probs=36.4
Q ss_pred CCHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHCHHHHHH
Q ss_conf 2999999999997489579999721799978999999848199999
Q gi|254781217|r 6 YTKERIDNILASFSGGLSLSQSCKKHGVTVVSFHGWVKQDREDLEK 51 (162)
Q Consensus 6 yt~el~d~Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e 51 (162)
T Consensus 7 LTl~eKi~iI~~~e~G~s~~~lar~~gi~~STl~~I~Kn-kekil~ 51 (53)
T pfam04218 7 LTLREKIEVIQRSEEGESKASLARRFNVPRSTLRDILKN-KEKLLK 51 (53)
T ss_pred ECHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHH-HHHHHH
T ss_conf 169999999999985896889999969879799999980-999986