HHsearch alignment for GI: 254781217 and conserved domain: pfam05225

>pfam05225 HTH_psq helix-turn-helix, Psq domain. This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster. In pipsqueak this domain binds to GAGA sequence.

Probab=92.94  E-value=0.15  Score=31.35  Aligned_cols=39  Identities=21%  Similarity=0.412  Sum_probs=31.4

Q ss_pred             CHHHHHHHHHHHHCC-HHHHHHHHCCCCCHHHHHHHHHHC
Q ss_conf             999999999997489-579999721799978999999848
Q gi|254781217|r    7 TKERIDNILASFSGG-LSLSQSCKKHGVTVVSFHGWVKQD   45 (162)
Q Consensus         7 t~el~d~Ic~~Ia~G-~SLr~Ick~~gmp~~Tv~~Wl~kd   45 (162)
T Consensus         1 tee~l~~Al~av~~g~~S~~kAa~~ygIP~sTL~~r~~g~   40 (45)
T pfam05225         1 TEEDLAEALEAVRNGKMSLRKAARKYGIPRSTLWRRLRGK   40 (45)
T ss_pred             CHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHCCC
T ss_conf             9789999999999199679999999789858999997563