HHsearch alignment of GI: 254781217 and MMDB domain: 1jko_C_

>1jko_C (C:) HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic}

Probab=96.95  E-value=0.00051  Score=47.08  Aligned_cols=44  Identities=14%  Similarity=0.161  Sum_probs=40.7

Q ss_pred             CHHCCHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHCH
Q ss_conf             12429999999999974895799997217999789999998481
Q gi|254781217|r    3 AHKYTKERIDNILASFSGGLSLSQSCKKHGVTVVSFHGWVKQDR   46 (162)
Q Consensus         3 ~~Kyt~el~d~Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~kd~   46 (162)
                      -.++|++.++.+...++.|.|++.||+..||+..|+|+++....
T Consensus         3 p~klt~eq~~~a~~l~~~G~s~~~iA~~~gVSr~TiYr~l~~~~   46 (52)
T 1jko_C            3 PRAINKHEQEQISRLLEKGHPRQQLAIIFGIGVSTLYRYFPASS   46 (52)
T ss_dssp             CCSSCTTHHHHHHHHHHTTCCHHHHHHTTSCCHHHHHHHSCTTC
T ss_pred             CCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHCCCHH
T ss_conf             98699999999999998799899999998979999999845214