HHsearch results for GI: 254781217 and protein with PDBid: 1u78_A

>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2

Probab=94.44  E-value=0.037  Score=33.85  Aligned_cols=42  Identities=10%  Similarity=0.029  Sum_probs=38.6

Q ss_pred             HHCCHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHC
Q ss_conf             242999999999997489579999721799978999999848
Q gi|254781217|r    4 HKYTKERIDNILASFSGGLSLSQSCKKHGVTVVSFHGWVKQD   45 (162)
Q Consensus         4 ~Kyt~el~d~Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~kd   45 (162)
                      .-+|++.-..|+.....|.|.+.|++..|++.+||++|+...
T Consensus         5 ~~lt~~~R~~I~~l~~~G~s~~~IAk~lg~s~stV~r~lk~~   46 (141)
T 1u78_A            5 SALSDTERAQLDVMKLLNVSLHEMSRKISRSRHCIRVYLKDP   46 (141)
T ss_dssp             CCCCHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHSG
T ss_pred             CCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf             879999999999999979999999999895789999999971