HHSEARCH alignment of GI: 254781217 and SCOP domain: d1hlva1

Alignment

Probab=92.61  E-value=0.099  Score=29.46  Aligned_cols=49  Identities=6%  Similarity=0.106  Sum_probs=37.4

Q ss_pred             HCCHHHHHHHHHHHHCCH--HHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHH
Q ss_conf             429999999999974895--79999721799978999999848199999999
Q gi|254781217|r    5 KYTKERIDNILASFSGGL--SLSQSCKKHGVTVVSFHGWVKQDREDLEKRYE   54 (162)
Q Consensus         5 Kyt~el~d~Ic~~Ia~G~--SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e~Y~   54 (162)
                      .+|-+.=-+||.++..|.  +-+.||+.+|+|.+||..|+.. .+.....+.
T Consensus         7 ~LT~~eK~~ii~~~e~g~k~sq~eIA~~fGv~~STvs~IlKn-K~kil~~~~   57 (66)
T d1hlva1           7 QLTFREKSRIIQEVEENPDLRKGEIARRFNIPPSTLSTILKN-KRAILASER   57 (66)
T ss_dssp             CCCHHHHHHHHHHHHHCTTSCHHHHHHHHTCCHHHHHHHHHT-HHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHH-HHHHHHHHH
T ss_conf             377999999999998087210999999959976479999987-999998899

SCOP domain information

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Centromere-binding
domain: DNA-binding domain of centromere binding protein B (CENP-B)
species: Human (Homo sapiens) [TaxId: 9606]