HHSEARCH alignment of GI: 254781217 and SCOP domain: d1ijwc_

Alignment

Probab=96.90  E-value=0.0003  Score=46.08  Aligned_cols=42  Identities=14%  Similarity=0.166  Sum_probs=39.1

Q ss_pred             CHHCCHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf             124299999999999748957999972179997899999984
Q gi|254781217|r    3 AHKYTKERIDNILASFSGGLSLSQSCKKHGVTVVSFHGWVKQ   44 (162)
Q Consensus         3 ~~Kyt~el~d~Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~k   44 (162)
                      -+++|++.++.+-.++++|.|...||+..|++..|+|+|+-.
T Consensus         3 ~~~lt~~q~~~a~~l~~~G~s~~~iA~~~gVSr~TiYry~pa   44 (47)
T d1ijwc_           3 PRAINKHEQEQISRLLEKGHPRQQLAIIFGIGVSTLYRYFPA   44 (47)
T ss_dssp             CCSSCHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHSCS
T ss_pred             CCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHCCC
T ss_conf             885999999999999988997999999979699999855775

SCOP domain information

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Recombinase DNA-binding domain
domain: HIN recombinase (DNA-binding domain)
species: Synthetic