HHSEARCH alignment of GI: 254781217 and SCOP domain: d1k78a1

Alignment
>d1k78a1 a.4.1.5 (A:19-81) Pax-5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=93.99  E-value=0.029  Score=32.95  Aligned_cols=41  Identities=7%  Similarity=-0.016  Sum_probs=37.9

Q ss_pred             HCCHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHC
Q ss_conf             42999999999997489579999721799978999999848
Q gi|254781217|r    5 KYTKERIDNILASFSGGLSLSQSCKKHGVTVVSFHGWVKQD   45 (162)
Q Consensus         5 Kyt~el~d~Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~kd   45 (162)
                      =|+-++-..|++.+..|.|-++|++..+++.+|+.+|+.+.
T Consensus        14 Pls~DLR~Riv~~~~~G~s~r~aA~rf~VS~s~v~k~l~r~   54 (63)
T d1k78a1          14 PLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRY   54 (63)
T ss_dssp             CCCHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf             59999999999999959989999999597799999999999


SCOP domain information

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Paired domain
domain: Pax-5
species: Human (Homo sapiens) [TaxId: 9606]