RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254781217|ref|YP_003065630.1| hypothetical protein CLIBASIA_05620 [Candidatus Liberibacter asiaticus str. psy62] (162 letters) >3hef_A Gene 1 protein; bacteriophage SF6, terminase small subunit GP1, GP1 octameric assembly, GP1 channel, DNA recognition, DNA packaging; 1.65A {Enterobacteria phage SF6} (A:) Length = 143 Score = 59.1 bits (143), Expect = 3e-10 Identities = 27/131 (20%), Positives = 54/131 (41%), Gaps = 13/131 (9%) Query: 5 KYTKERIDNILASFSGGLSLSQSCKKHGV-TVVSFHGWVKQDREDLEKRYEQAKQSHMEH 63 Y E D+I + S G SL + CK+ G+ + W+ + ED +Y +A ++ + Sbjct: 15 DYMPEVADDICSLLSSGESLLKVCKRPGMPDKSTVFRWLAKH-EDFRDKYAKATEARADS 73 Query: 64 LSENLASVVEAPLTEEERDHPQAIKLRELRMKRLQWELEKRYRNVYGNHVSVEQKH---- 119 + E + + + + + + LR+ +W L + YG+ V+ E Sbjct: 74 IFEEIFEIADNAIPDAA-----EVAKARLRVDTRKWALARMNPRKYGDKVTNELVGKDGG 128 Query: 120 --TIDLKPLMD 128 I+ P+ Sbjct: 129 AIQIETSPMST 139 >2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster} (A:) Length = 87 Score = 34.3 bits (79), Expect = 0.007 Identities = 8/44 (18%), Positives = 15/44 (34%) Query: 5 KYTKERIDNILASFSGGLSLSQSCKKHGVTVVSFHGWVKQDRED 48 T + + G S + + GV + GW K + + Sbjct: 22 SLTPRDKIHAIQRIHDGESKASVARDIGVPESTLRGWCKNEDKL 65 >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} (A:1221-1330,A:1541-1688) Length = 258 Score = 33.7 bits (77), Expect = 0.013 Identities = 11/70 (15%), Positives = 19/70 (27%), Gaps = 10/70 (14%) Query: 46 REDLEKRYEQAKQSH---MEHLSENLASVVEAPLTEEERDHPQAIKLRELRMKRLQWELE 102 + L R Q K +E L + E + + I Q Sbjct: 30 KRQLVTREAQIKDWVENELEALKLEAEEIPSEDQNEFLLERTREIH----NEAESQ---L 82 Query: 103 KRYRNVYGNH 112 + + +GN Sbjct: 83 RAAQQQWGND 92 >2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} (A:1-56) Length = 56 Score = 29.7 bits (67), Expect = 0.20 Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 2/46 (4%) Query: 5 KYTKE-RIDNI-LASFSGGLSLSQSCKKHGVTVVSFHGWVKQDRED 48 Y++E + D + L S G SL Q G+ V+ W+ + + Sbjct: 5 TYSEEFKRDAVALYENSDGASLQQIANDLGINRVTLKNWIIKYGSN 50 >2bp1_A Aflatoxin B1 aldehyde reductase member 2; oxidoreductase, aldo-keto reductase family 7, SSA reductase, TIM barrel; HET: FLC NDP; 2.4A {Homo sapiens} (A:) Length = 360 Score = 28.8 bits (62), Expect = 0.35 Identities = 10/26 (38%), Positives = 13/26 (50%) Query: 57 KQSHMEHLSENLASVVEAPLTEEERD 82 S +E L +NLA+ E PL D Sbjct: 317 GMSSLEQLEQNLAATEEGPLEPAVVD 342 >3erp_A Putative oxidoreductase; funded by the national institute of allergy and infectious diseases of NIH contract number HHSN272200700058C; 1.55A {Salmonella enterica subsp} (A:) Length = 353 Score = 29.0 bits (63), Expect = 0.36 Identities = 2/26 (7%), Positives = 7/26 (26%) Query: 57 KQSHMEHLSENLASVVEAPLTEEERD 82 S + + + + + E Sbjct: 318 GASKPSQIEDAVGMLANRRFSAAECA 343 >1gve_A Aflatoxin B1 aldehyde reductase; oxidoreductase, aldo-keto reductase, succinic semialdehyde oxidoreductase, AKR7 family; HET: NAP CIT; 1.38A {Rattus norvegicus} (A:) Length = 327 Score = 28.9 bits (62), Expect = 0.38 Identities = 11/27 (40%), Positives = 13/27 (48%) Query: 56 AKQSHMEHLSENLASVVEAPLTEEERD 82 S +E L +NLA V E PL D Sbjct: 283 LGMSSLEQLEQNLALVEEGPLEPAVVD 309 >2rn7_A IS629 ORFA; helix, all alpha, unknown function; NMR {Shigella flexneri} (A:) Length = 108 Score = 28.0 bits (62), Expect = 0.60 Identities = 9/54 (16%), Positives = 18/54 (33%) Query: 11 IDNILASFSGGLSLSQSCKKHGVTVVSFHGWVKQDREDLEKRYEQAKQSHMEHL 64 +++ S ++ K G T + WV+Q D + + L Sbjct: 20 LESQGEYDSQWATICSIAPKIGCTPETLRVWVRQHERDTGGDDGGLTTAERQRL 73 >2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, structural genomics; NMR {Mycobacterium tuberculosis H37RV} (A:) Length = 118 Score = 27.6 bits (61), Expect = 0.77 Identities = 17/75 (22%), Positives = 29/75 (38%), Gaps = 1/75 (1%) Query: 22 LSLSQSCKKHGVTVVSFHGWVKQDREDLEKRYEQAKQSHMEHLSENLASVVEAPLTEEER 81 L L++S + ++ + G V E + RY SH+ L VV A T++ Sbjct: 44 LGLTRSNVSNHLSCLRGCGLVVATYEGRQVRY-ALADSHLARALGELVQVVLAVDTDQPC 102 Query: 82 DHPQAIKLRELRMKR 96 +A + M Sbjct: 103 VAERAASGEAVEMTG 117 >2hp4_A T-cell surface glycoprotein CD8 alpha chain; CO-receptor, soluble protein, KD, protein engineering, immunotherapy, immune-suppressor, immune system; 2.10A {Homo sapiens} PDB: 1akj_D 1cd8_A 2q3a_A (A:) Length = 114 Score = 27.3 bits (61), Expect = 1.00 Identities = 5/28 (17%), Positives = 12/28 (42%) Query: 17 SFSGGLSLSQSCKKHGVTVVSFHGWVKQ 44 +++ G ++ C+ S W+ Q Sbjct: 11 TWNLGETVELKCQVLLSNPTSGASWLFQ 38 >2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus} (A:) Length = 165 Score = 27.2 bits (60), Expect = 1.1 Identities = 15/89 (16%), Positives = 24/89 (26%), Gaps = 1/89 (1%) Query: 22 LSLSQSCKKHGVTVVSFHGWVKQDREDLEKRYEQAKQSHMEHLSENLASVVEAPLTEEER 81 L LS K + V+ G V + L + VE +T + Sbjct: 34 LGLSHGRAKALIYVLEKEGRVTRVAFGNVALV-CLSXDQYRQLVDGXIREVERLVTTNKL 92 Query: 82 DHPQAIKLRELRMKRLQWELEKRYRNVYG 110 +L +L +K Q Sbjct: 93 KFISPPRLHDLIIKDPQARKFFSSIIPIA 121 >1ynp_A Oxidoreductase, AKR11C1; aldo-keto reductase, NADPH; HET: SUC; 1.25A {Bacillus halodurans c-125} PDB: 1ynq_A* (A:) Length = 317 Score = 27.1 bits (58), Expect = 1.3 Identities = 9/26 (34%), Positives = 14/26 (53%) Query: 57 KQSHMEHLSENLASVVEAPLTEEERD 82 S ++ + N+ +V PLT EER Sbjct: 276 GASSIDQVKANVQAVEATPLTAEERQ 301 >3eak_A NBBCII10-FGLA; antibody, nanobody, humanization, VHH domain, immune system; 1.95A {Camelus dromedarius} (A:) Length = 137 Score = 26.2 bits (58), Expect = 2.3 Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 9/34 (26%) Query: 20 GGL-----SLSQSCKKHGVTVVSF----HGWVKQ 44 GGL SL SC G + S+ GW +Q Sbjct: 9 GGLVQPGGSLRLSCAASGGSEYSYSTFSLGWFRQ 42 >3cx5_J Heavy chain (VH) of FV-fragment; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Mus musculus} (J:) Length = 127 Score = 26.2 bits (58), Expect = 2.5 Identities = 7/26 (26%), Positives = 13/26 (50%), Gaps = 2/26 (7%) Query: 21 GLSLSQSCKKHGVTVVSFH--GWVKQ 44 SLS +C G ++ S + W++ Sbjct: 15 SQSLSLTCSVTGYSITSGYYWNWIRL 40 >3bik_B Programmed cell death protein 1; CO-stimulation, receptor-ligand complex, immunoglobulin- like beta-sandwich, T cell, B cell, programmed death; 2.65A {Mus musculus} (B:) Length = 134 Score = 25.7 bits (57), Expect = 3.1 Identities = 3/24 (12%), Positives = 8/24 (33%) Query: 21 GLSLSQSCKKHGVTVVSFHGWVKQ 44 G + + +C + W + Sbjct: 24 GANATFTCSLSNWSEDLMLNWNRL 47 >2f48_A Diphosphate--fructose-6-phosphate 1- phosphotransferase; HET: FBP; 2.11A {Borrelia burgdorferi B31} (A:212-315,A:388-432,A:505-555) Length = 200 Score = 25.6 bits (56), Expect = 3.3 Identities = 17/85 (20%), Positives = 27/85 (31%), Gaps = 8/85 (9%) Query: 29 KKHGVTVVSFHGWVKQDREDLEKRYEQAKQSHMEHL------SENLASVVEAPLTEEERD 82 GV +V G + R EK + + QS + + + V E R Sbjct: 92 DNFGVVIVP-EGLINVSRVPTEKLFIEMIQSRLNDMKKRGEYKGSFTPVDH-FFGYEGRS 149 Query: 83 HPQAIKLRELRMKRLQWELEKRYRN 107 + +E R +W L Y Sbjct: 150 DLEGRPFKEFVKNRDKWALNNLYLY 174 >3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP} (A:) Length = 118 Score = 25.2 bits (55), Expect = 4.5 Identities = 6/77 (7%), Positives = 22/77 (28%), Gaps = 1/77 (1%) Query: 22 LSLSQSCKKHGVTVVSFHGWVKQDREDLEKRYEQAKQSHMEHLSENLASVVEAPLTEEER 81 ++ + + GW++ ++ + ++ + LA E + +R Sbjct: 41 FDMALPSFMKHIHFLEDSGWIRTHKQGRVRTC-AIEKEPFTAVEAWLAEQQELWESRTDR 99 Query: 82 DHPQAIKLRELRMKRLQ 98 + + Sbjct: 100 LEQFVTEHTVTAHAKAT 116 >3dmm_D T-cell surface glycoprotein CD8 beta chain; T cell CO-receptor CD8AB MHC complex, immune response, membrane, MHC I, phosphoprotein, transmembrane; 2.60A {Mus musculus} (D:) Length = 150 Score = 25.0 bits (55), Expect = 4.5 Identities = 3/26 (11%), Positives = 13/26 (50%) Query: 21 GLSLSQSCKKHGVTVVSFHGWVKQDR 46 + SC+ ++ ++ W+++ + Sbjct: 16 NHTAKMSCEVKSISKLTSIYWLRERQ 41 >2p0y_A Hypothetical protein LP_0780; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 3.00A {Lactobacillus plantarum} (A:) Length = 341 Score = 25.2 bits (55), Expect = 4.7 Identities = 9/81 (11%), Positives = 22/81 (27%), Gaps = 16/81 (19%) Query: 43 KQDREDLEKRYEQAKQSHM-----EHLSENLASVVEAPLTEEE----RDHPQAI--KLRE 91 ++ ED ++ + S L E V+ + + + +L Sbjct: 265 EKVPEDYXDFHKFNEVSKQVSHDFRGLREQNCRVISSNFLKLRDNGAFHDGDQVVAELXN 324 Query: 92 LRMKRLQWELEKRYRNVYGNH 112 L + + +H Sbjct: 325 LVGHS-----DVFRLEHHHHH 340 >2atp_B T-cell surface glycoprotein CD8 beta chain; CD8AB, CD8AA, MHC, immune system; HET: NAG; 2.40A {Mus musculus} (B:) Length = 115 Score = 25.0 bits (55), Expect = 5.2 Identities = 4/32 (12%), Positives = 13/32 (40%), Gaps = 6/32 (18%) Query: 19 SGGL------SLSQSCKKHGVTVVSFHGWVKQ 44 L + SC+ ++ ++ W+++ Sbjct: 5 PSSLLVQTNHTAKMSCEVKSISKLTSIYWLRE 36 >3a7r_A Lipoate-protein ligase A; adenylate-forming enzyme, lipoic acid, ATP-binding, cytoplasm, nucleotide-binding, transferase, lipoyl; HET: LAQ; 2.05A {Escherichia coli} PDB: 1x2h_A* 3a7a_A* 1x2g_A* (A:1-244) Length = 244 Score = 25.0 bits (54), Expect = 5.3 Identities = 11/74 (14%), Positives = 20/74 (27%), Gaps = 2/74 (2%) Query: 28 CKKHGVTVVSFHGWVKQDREDLEK-RYEQAKQSHMEHLSENL-ASVVEAPLTEEERDHPQ 85 K + S V E L +EQ ++ E + V ++ + Sbjct: 170 KKLAAKGITSVRSRVTNLTELLPGITHEQVCEAITEAFFAHYGERVEAEIISPNKTPDLP 229 Query: 86 AIKLRELRMKRLQW 99 R +W Sbjct: 230 NFAETFARQSSWEW 243 >1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural genomics, PSI, protein structure initiative, TB structural genomics consortium; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} (A:1-105,A:348-456) Length = 214 Score = 24.6 bits (53), Expect = 6.3 Identities = 3/23 (13%), Positives = 6/23 (26%) Query: 29 KKHGVTVVSFHGWVKQDREDLEK 51 +V+ W D + Sbjct: 169 AARQPKLVTSAHWQVIDAFERAA 191 >2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens} (A:1-218) Length = 218 Score = 24.6 bits (53), Expect = 6.6 Identities = 5/24 (20%), Positives = 7/24 (29%) Query: 21 GLSLSQSCKKHGVTVVSFHGWVKQ 44 G S C + V W + Sbjct: 18 GESAILHCTVTSLIPVGPIQWFRG 41 >3bp6_A Programmed cell death protein 1; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglobulin domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_A 1npu_A (A:) Length = 117 Score = 24.5 bits (54), Expect = 6.8 Identities = 3/24 (12%), Positives = 8/24 (33%) Query: 21 GLSLSQSCKKHGVTVVSFHGWVKQ 44 G + + +C + W + Sbjct: 14 GANATFTCSLSNWSEDLMLNWNRL 37 >1vqz_A Lipoate-protein ligase, putative; NP_345629.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.99A {Streptococcus pneumoniae TIGR4} (A:1-49,A:92-251) Length = 209 Score = 24.6 bits (53), Expect = 7.3 Identities = 7/47 (14%), Positives = 19/47 (40%), Gaps = 2/47 (4%) Query: 53 YEQAKQSHMEHLSENLASVVEAPLTEEERDHPQAIKLRELRMKRLQW 99 E+ + +E+ + E +EEE + ++++ + W Sbjct: 164 VEKFRDLLLEYXKKEYPEXTEYVFSEEEL--AEINRIKDTKFGTWDW 208 >1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} (C:17-69) Length = 53 Score = 24.2 bits (53), Expect = 8.1 Identities = 4/34 (11%), Positives = 13/34 (38%) Query: 14 ILASFSGGLSLSQSCKKHGVTVVSFHGWVKQDRE 47 I+ + G+ ++ V+ + + +E Sbjct: 10 IVEMAADGIRPCVISRQLRVSHGCVSKILNRYQE 43 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.314 0.129 0.370 Gapped Lambda K H 0.267 0.0623 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 1,186,533 Number of extensions: 50858 Number of successful extensions: 208 Number of sequences better than 10.0: 1 Number of HSP's gapped: 206 Number of HSP's successfully gapped: 48 Length of query: 162 Length of database: 4,956,049 Length adjustment: 82 Effective length of query: 80 Effective length of database: 2,184,039 Effective search space: 174723120 Effective search space used: 174723120 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 51 (23.7 bits)