RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254781217|ref|YP_003065630.1| hypothetical protein
CLIBASIA_05620 [Candidatus Liberibacter asiaticus str. psy62]
(162 letters)
>3hef_A Gene 1 protein; bacteriophage SF6, terminase small subunit
GP1, GP1 octameric assembly, GP1 channel, DNA
recognition, DNA packaging; 1.65A {Enterobacteria phage
SF6} (A:)
Length = 143
Score = 59.1 bits (143), Expect = 3e-10
Identities = 27/131 (20%), Positives = 54/131 (41%), Gaps = 13/131 (9%)
Query: 5 KYTKERIDNILASFSGGLSLSQSCKKHGV-TVVSFHGWVKQDREDLEKRYEQAKQSHMEH 63
Y E D+I + S G SL + CK+ G+ + W+ + ED +Y +A ++ +
Sbjct: 15 DYMPEVADDICSLLSSGESLLKVCKRPGMPDKSTVFRWLAKH-EDFRDKYAKATEARADS 73
Query: 64 LSENLASVVEAPLTEEERDHPQAIKLRELRMKRLQWELEKRYRNVYGNHVSVEQKH---- 119
+ E + + + + + + LR+ +W L + YG+ V+ E
Sbjct: 74 IFEEIFEIADNAIPDAA-----EVAKARLRVDTRKWALARMNPRKYGDKVTNELVGKDGG 128
Query: 120 --TIDLKPLMD 128
I+ P+
Sbjct: 129 AIQIETSPMST 139
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Drosophila melanogaster} (A:)
Length = 87
Score = 34.3 bits (79), Expect = 0.007
Identities = 8/44 (18%), Positives = 15/44 (34%)
Query: 5 KYTKERIDNILASFSGGLSLSQSCKKHGVTVVSFHGWVKQDRED 48
T + + G S + + GV + GW K + +
Sbjct: 22 SLTPRDKIHAIQRIHDGESKASVARDIGVPESTLRGWCKNEDKL 65
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
reductase, beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae} (A:1221-1330,A:1541-1688)
Length = 258
Score = 33.7 bits (77), Expect = 0.013
Identities = 11/70 (15%), Positives = 19/70 (27%), Gaps = 10/70 (14%)
Query: 46 REDLEKRYEQAKQSH---MEHLSENLASVVEAPLTEEERDHPQAIKLRELRMKRLQWELE 102
+ L R Q K +E L + E + + I Q
Sbjct: 30 KRQLVTREAQIKDWVENELEALKLEAEEIPSEDQNEFLLERTREIH----NEAESQ---L 82
Query: 103 KRYRNVYGNH 112
+ + +GN
Sbjct: 83 RAAQQQWGND 92
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein
structure, structural genomics, protein structure
initiative; NMR {Corynebacterium glutamicum} (A:1-56)
Length = 56
Score = 29.7 bits (67), Expect = 0.20
Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Query: 5 KYTKE-RIDNI-LASFSGGLSLSQSCKKHGVTVVSFHGWVKQDRED 48
Y++E + D + L S G SL Q G+ V+ W+ + +
Sbjct: 5 TYSEEFKRDAVALYENSDGASLQQIANDLGINRVTLKNWIIKYGSN 50
>2bp1_A Aflatoxin B1 aldehyde reductase member 2; oxidoreductase,
aldo-keto reductase family 7, SSA reductase, TIM barrel;
HET: FLC NDP; 2.4A {Homo sapiens} (A:)
Length = 360
Score = 28.8 bits (62), Expect = 0.35
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 57 KQSHMEHLSENLASVVEAPLTEEERD 82
S +E L +NLA+ E PL D
Sbjct: 317 GMSSLEQLEQNLAATEEGPLEPAVVD 342
>3erp_A Putative oxidoreductase; funded by the national institute of
allergy and infectious diseases of NIH contract number
HHSN272200700058C; 1.55A {Salmonella enterica subsp}
(A:)
Length = 353
Score = 29.0 bits (63), Expect = 0.36
Identities = 2/26 (7%), Positives = 7/26 (26%)
Query: 57 KQSHMEHLSENLASVVEAPLTEEERD 82
S + + + + + E
Sbjct: 318 GASKPSQIEDAVGMLANRRFSAAECA 343
>1gve_A Aflatoxin B1 aldehyde reductase; oxidoreductase, aldo-keto
reductase, succinic semialdehyde oxidoreductase, AKR7
family; HET: NAP CIT; 1.38A {Rattus norvegicus} (A:)
Length = 327
Score = 28.9 bits (62), Expect = 0.38
Identities = 11/27 (40%), Positives = 13/27 (48%)
Query: 56 AKQSHMEHLSENLASVVEAPLTEEERD 82
S +E L +NLA V E PL D
Sbjct: 283 LGMSSLEQLEQNLALVEEGPLEPAVVD 309
>2rn7_A IS629 ORFA; helix, all alpha, unknown function; NMR
{Shigella flexneri} (A:)
Length = 108
Score = 28.0 bits (62), Expect = 0.60
Identities = 9/54 (16%), Positives = 18/54 (33%)
Query: 11 IDNILASFSGGLSLSQSCKKHGVTVVSFHGWVKQDREDLEKRYEQAKQSHMEHL 64
+++ S ++ K G T + WV+Q D + + L
Sbjct: 20 LESQGEYDSQWATICSIAPKIGCTPETLRVWVRQHERDTGGDDGGLTTAERQRL 73
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium,
transcriptional repressor, solution structure,
structural genomics; NMR {Mycobacterium tuberculosis
H37RV} (A:)
Length = 118
Score = 27.6 bits (61), Expect = 0.77
Identities = 17/75 (22%), Positives = 29/75 (38%), Gaps = 1/75 (1%)
Query: 22 LSLSQSCKKHGVTVVSFHGWVKQDREDLEKRYEQAKQSHMEHLSENLASVVEAPLTEEER 81
L L++S + ++ + G V E + RY SH+ L VV A T++
Sbjct: 44 LGLTRSNVSNHLSCLRGCGLVVATYEGRQVRY-ALADSHLARALGELVQVVLAVDTDQPC 102
Query: 82 DHPQAIKLRELRMKR 96
+A + M
Sbjct: 103 VAERAASGEAVEMTG 117
>2hp4_A T-cell surface glycoprotein CD8 alpha chain; CO-receptor,
soluble protein, KD, protein engineering,
immunotherapy, immune-suppressor, immune system; 2.10A
{Homo sapiens} PDB: 1akj_D 1cd8_A 2q3a_A (A:)
Length = 114
Score = 27.3 bits (61), Expect = 1.00
Identities = 5/28 (17%), Positives = 12/28 (42%)
Query: 17 SFSGGLSLSQSCKKHGVTVVSFHGWVKQ 44
+++ G ++ C+ S W+ Q
Sbjct: 11 TWNLGETVELKCQVLLSNPTSGASWLFQ 38
>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum
spherical virus} (A:)
Length = 165
Score = 27.2 bits (60), Expect = 1.1
Identities = 15/89 (16%), Positives = 24/89 (26%), Gaps = 1/89 (1%)
Query: 22 LSLSQSCKKHGVTVVSFHGWVKQDREDLEKRYEQAKQSHMEHLSENLASVVEAPLTEEER 81
L LS K + V+ G V + L + VE +T +
Sbjct: 34 LGLSHGRAKALIYVLEKEGRVTRVAFGNVALV-CLSXDQYRQLVDGXIREVERLVTTNKL 92
Query: 82 DHPQAIKLRELRMKRLQWELEKRYRNVYG 110
+L +L +K Q
Sbjct: 93 KFISPPRLHDLIIKDPQARKFFSSIIPIA 121
>1ynp_A Oxidoreductase, AKR11C1; aldo-keto reductase, NADPH; HET:
SUC; 1.25A {Bacillus halodurans c-125} PDB: 1ynq_A* (A:)
Length = 317
Score = 27.1 bits (58), Expect = 1.3
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 57 KQSHMEHLSENLASVVEAPLTEEERD 82
S ++ + N+ +V PLT EER
Sbjct: 276 GASSIDQVKANVQAVEATPLTAEERQ 301
>3eak_A NBBCII10-FGLA; antibody, nanobody, humanization, VHH
domain, immune system; 1.95A {Camelus dromedarius} (A:)
Length = 137
Score = 26.2 bits (58), Expect = 2.3
Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 9/34 (26%)
Query: 20 GGL-----SLSQSCKKHGVTVVSF----HGWVKQ 44
GGL SL SC G + S+ GW +Q
Sbjct: 9 GGLVQPGGSLRLSCAASGGSEYSYSTFSLGWFRQ 42
>3cx5_J Heavy chain (VH) of FV-fragment; complex III, electron
transfer complex, cytochrome BC1 complex,
mitochondrialtransmembrane complex; HET: M3L SUC 6PH
UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Mus musculus}
(J:)
Length = 127
Score = 26.2 bits (58), Expect = 2.5
Identities = 7/26 (26%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 21 GLSLSQSCKKHGVTVVSFH--GWVKQ 44
SLS +C G ++ S + W++
Sbjct: 15 SQSLSLTCSVTGYSITSGYYWNWIRL 40
>3bik_B Programmed cell death protein 1; CO-stimulation,
receptor-ligand complex, immunoglobulin- like
beta-sandwich, T cell, B cell, programmed death; 2.65A
{Mus musculus} (B:)
Length = 134
Score = 25.7 bits (57), Expect = 3.1
Identities = 3/24 (12%), Positives = 8/24 (33%)
Query: 21 GLSLSQSCKKHGVTVVSFHGWVKQ 44
G + + +C + W +
Sbjct: 24 GANATFTCSLSNWSEDLMLNWNRL 47
>2f48_A Diphosphate--fructose-6-phosphate 1- phosphotransferase;
HET: FBP; 2.11A {Borrelia burgdorferi B31}
(A:212-315,A:388-432,A:505-555)
Length = 200
Score = 25.6 bits (56), Expect = 3.3
Identities = 17/85 (20%), Positives = 27/85 (31%), Gaps = 8/85 (9%)
Query: 29 KKHGVTVVSFHGWVKQDREDLEKRYEQAKQSHMEHL------SENLASVVEAPLTEEERD 82
GV +V G + R EK + + QS + + + V E R
Sbjct: 92 DNFGVVIVP-EGLINVSRVPTEKLFIEMIQSRLNDMKKRGEYKGSFTPVDH-FFGYEGRS 149
Query: 83 HPQAIKLRELRMKRLQWELEKRYRN 107
+ +E R +W L Y
Sbjct: 150 DLEGRPFKEFVKNRDKWALNNLYLY 174
>3f6o_A Probable transcriptional regulator, ARSR family protein;
transcriptional regulator,RHA00566,MCSG, structural
genomics, PSI-2; 1.90A {Rhodococcus SP} (A:)
Length = 118
Score = 25.2 bits (55), Expect = 4.5
Identities = 6/77 (7%), Positives = 22/77 (28%), Gaps = 1/77 (1%)
Query: 22 LSLSQSCKKHGVTVVSFHGWVKQDREDLEKRYEQAKQSHMEHLSENLASVVEAPLTEEER 81
++ + + GW++ ++ + ++ + LA E + +R
Sbjct: 41 FDMALPSFMKHIHFLEDSGWIRTHKQGRVRTC-AIEKEPFTAVEAWLAEQQELWESRTDR 99
Query: 82 DHPQAIKLRELRMKRLQ 98
+ +
Sbjct: 100 LEQFVTEHTVTAHAKAT 116
>3dmm_D T-cell surface glycoprotein CD8 beta chain; T cell
CO-receptor CD8AB MHC complex, immune response,
membrane, MHC I, phosphoprotein, transmembrane; 2.60A
{Mus musculus} (D:)
Length = 150
Score = 25.0 bits (55), Expect = 4.5
Identities = 3/26 (11%), Positives = 13/26 (50%)
Query: 21 GLSLSQSCKKHGVTVVSFHGWVKQDR 46
+ SC+ ++ ++ W+++ +
Sbjct: 16 NHTAKMSCEVKSISKLTSIYWLRERQ 41
>2p0y_A Hypothetical protein LP_0780; structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium, NESG; 3.00A {Lactobacillus
plantarum} (A:)
Length = 341
Score = 25.2 bits (55), Expect = 4.7
Identities = 9/81 (11%), Positives = 22/81 (27%), Gaps = 16/81 (19%)
Query: 43 KQDREDLEKRYEQAKQSHM-----EHLSENLASVVEAPLTEEE----RDHPQAI--KLRE 91
++ ED ++ + S L E V+ + + + +L
Sbjct: 265 EKVPEDYXDFHKFNEVSKQVSHDFRGLREQNCRVISSNFLKLRDNGAFHDGDQVVAELXN 324
Query: 92 LRMKRLQWELEKRYRNVYGNH 112
L + + +H
Sbjct: 325 LVGHS-----DVFRLEHHHHH 340
>2atp_B T-cell surface glycoprotein CD8 beta chain; CD8AB, CD8AA,
MHC, immune system; HET: NAG; 2.40A {Mus musculus} (B:)
Length = 115
Score = 25.0 bits (55), Expect = 5.2
Identities = 4/32 (12%), Positives = 13/32 (40%), Gaps = 6/32 (18%)
Query: 19 SGGL------SLSQSCKKHGVTVVSFHGWVKQ 44
L + SC+ ++ ++ W+++
Sbjct: 5 PSSLLVQTNHTAKMSCEVKSISKLTSIYWLRE 36
>3a7r_A Lipoate-protein ligase A; adenylate-forming enzyme, lipoic
acid, ATP-binding, cytoplasm, nucleotide-binding,
transferase, lipoyl; HET: LAQ; 2.05A {Escherichia coli}
PDB: 1x2h_A* 3a7a_A* 1x2g_A* (A:1-244)
Length = 244
Score = 25.0 bits (54), Expect = 5.3
Identities = 11/74 (14%), Positives = 20/74 (27%), Gaps = 2/74 (2%)
Query: 28 CKKHGVTVVSFHGWVKQDREDLEK-RYEQAKQSHMEHLSENL-ASVVEAPLTEEERDHPQ 85
K + S V E L +EQ ++ E + V ++ +
Sbjct: 170 KKLAAKGITSVRSRVTNLTELLPGITHEQVCEAITEAFFAHYGERVEAEIISPNKTPDLP 229
Query: 86 AIKLRELRMKRLQW 99
R +W
Sbjct: 230 NFAETFARQSSWEW 243
>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural genomics,
PSI, protein structure initiative, TB structural
genomics consortium; HET: FAD ODP; 1.05A {Mycobacterium
tuberculosis} (A:1-105,A:348-456)
Length = 214
Score = 24.6 bits (53), Expect = 6.3
Identities = 3/23 (13%), Positives = 6/23 (26%)
Query: 29 KKHGVTVVSFHGWVKQDREDLEK 51
+V+ W D +
Sbjct: 169 AARQPKLVTSAHWQVIDAFERAA 191
>2wng_A Tyrosine-protein phosphatase non-receptor type substrate
1; signal regulatory protein alpha, immunoglobulin
superfamily, phosphoprotein; HET: NAG; 2.49A {Homo
sapiens} (A:1-218)
Length = 218
Score = 24.6 bits (53), Expect = 6.6
Identities = 5/24 (20%), Positives = 7/24 (29%)
Query: 21 GLSLSQSCKKHGVTVVSFHGWVKQ 44
G S C + V W +
Sbjct: 18 GESAILHCTVTSLIPVGPIQWFRG 41
>3bp6_A Programmed cell death protein 1; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglobulin domain,
membrane, transmembrane, receptor; 1.60A {Mus musculus}
PDB: 3bp5_A 1npu_A (A:)
Length = 117
Score = 24.5 bits (54), Expect = 6.8
Identities = 3/24 (12%), Positives = 8/24 (33%)
Query: 21 GLSLSQSCKKHGVTVVSFHGWVKQ 44
G + + +C + W +
Sbjct: 14 GANATFTCSLSNWSEDLMLNWNRL 37
>1vqz_A Lipoate-protein ligase, putative; NP_345629.1, structural
genomics, joint center for structural genomics, JCSG;
HET: MSE; 1.99A {Streptococcus pneumoniae TIGR4}
(A:1-49,A:92-251)
Length = 209
Score = 24.6 bits (53), Expect = 7.3
Identities = 7/47 (14%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
Query: 53 YEQAKQSHMEHLSENLASVVEAPLTEEERDHPQAIKLRELRMKRLQW 99
E+ + +E+ + E +EEE + ++++ + W
Sbjct: 164 VEKFRDLLLEYXKKEYPEXTEYVFSEEEL--AEINRIKDTKFGTWDW 208
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix,
PAX, paired domain, DNA-binding protein, gene
regulation/DNA complex; HET: DNA; 2.50A {Drosophila
melanogaster} (C:17-69)
Length = 53
Score = 24.2 bits (53), Expect = 8.1
Identities = 4/34 (11%), Positives = 13/34 (38%)
Query: 14 ILASFSGGLSLSQSCKKHGVTVVSFHGWVKQDRE 47
I+ + G+ ++ V+ + + +E
Sbjct: 10 IVEMAADGIRPCVISRQLRVSHGCVSKILNRYQE 43
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.314 0.129 0.370
Gapped
Lambda K H
0.267 0.0623 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,186,533
Number of extensions: 50858
Number of successful extensions: 208
Number of sequences better than 10.0: 1
Number of HSP's gapped: 206
Number of HSP's successfully gapped: 48
Length of query: 162
Length of database: 4,956,049
Length adjustment: 82
Effective length of query: 80
Effective length of database: 2,184,039
Effective search space: 174723120
Effective search space used: 174723120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (23.7 bits)