BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254781217|ref|YP_003065630.1| hypothetical protein
CLIBASIA_05620 [Candidatus Liberibacter asiaticus str. psy62]
(162 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254781217|ref|YP_003065630.1| hypothetical protein CLIBASIA_05620 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 162
Score = 333 bits (855), Expect = 7e-94, Method: Compositional matrix adjust.
Identities = 162/162 (100%), Positives = 162/162 (100%)
Query: 1 MYAHKYTKERIDNILASFSGGLSLSQSCKKHGVTVVSFHGWVKQDREDLEKRYEQAKQSH 60
MYAHKYTKERIDNILASFSGGLSLSQSCKKHGVTVVSFHGWVKQDREDLEKRYEQAKQSH
Sbjct: 1 MYAHKYTKERIDNILASFSGGLSLSQSCKKHGVTVVSFHGWVKQDREDLEKRYEQAKQSH 60
Query: 61 MEHLSENLASVVEAPLTEEERDHPQAIKLRELRMKRLQWELEKRYRNVYGNHVSVEQKHT 120
MEHLSENLASVVEAPLTEEERDHPQAIKLRELRMKRLQWELEKRYRNVYGNHVSVEQKHT
Sbjct: 61 MEHLSENLASVVEAPLTEEERDHPQAIKLRELRMKRLQWELEKRYRNVYGNHVSVEQKHT 120
Query: 121 IDLKPLMDRVQHSIQSKGLKPVKALDKQTEKPLELPKLTKHD 162
IDLKPLMDRVQHSIQSKGLKPVKALDKQTEKPLELPKLTKHD
Sbjct: 121 IDLKPLMDRVQHSIQSKGLKPVKALDKQTEKPLELPKLTKHD 162
>gi|254781188|ref|YP_003065601.1| hypothetical protein CLIBASIA_05475 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 185
Score = 61.6 bits (148), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 83/155 (53%), Gaps = 10/155 (6%)
Query: 6 YTKERIDNILASFSGGLSLSQSCKKHGVTVVS-FHGWVKQDREDLEKRYEQAKQSHMEHL 64
Y+ E IL + G +L +K G+ S F+ W+K+D + L++ Y +A Q ++ L
Sbjct: 21 YSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLK-LQEAYTEALQCRLDLL 79
Query: 65 SENLASVVEAPLTEEERDHPQAI-KLRELRMKRLQWELEKRYRNVYGNHVSVEQKHTIDL 123
+E L T EE +P K+R+ + + + LEK YG VSVE KHTIDL
Sbjct: 80 AEELLEEPAP--TAEELANPVFYSKMRDRKQRMGTFLLEKLSNQKYGPRVSVESKHTIDL 137
Query: 124 KPLMDRVQHSIQSKGLKPV---KALDKQTEKPLEL 155
+P ++R++ K LKP+ + K TEKPLE+
Sbjct: 138 RPAIERLRE--HYKHLKPIDSERIPHKSTEKPLEI 170
>gi|254780895|ref|YP_003065308.1| hypothetical protein CLIBASIA_03960 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 91
Score = 27.3 bits (59), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 5 KYTKERIDNILASFSGGL-SLSQSCKKHGVTVVSFHGW 41
++ R ++A+ GGL SL ++C+ + +TV F W
Sbjct: 32 RWVARRKAEVVAAVKGGLLSLEEACQIYTLTVEEFLSW 69
>gi|254780941|ref|YP_003065354.1| GTP-binding protein Era [Candidatus Liberibacter asiaticus str.
psy62]
Length = 311
Score = 23.1 bits (48), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 8/73 (10%)
Query: 35 VVSFHGWVKQDREDLEKRYEQAKQSHMEHLSENLASVVEAPLTEEER-----DHPQAIKL 89
V+ G + L R+ AK S + H + S+V ++E+E D P
Sbjct: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83
Query: 90 RELR---MKRLQW 99
++ M RL W
Sbjct: 84 KDSYHKLMIRLSW 96
>gi|254780431|ref|YP_003064844.1| hypothetical protein CLIBASIA_01580 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 178
Score = 21.9 bits (45), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 6 YTKERIDNILASFSGGLSLSQ 26
+T ERID + +S GLS SQ
Sbjct: 3 WTVERIDKLKKFWSEGLSASQ 23
>gi|254780747|ref|YP_003065160.1| putative protease IV transmembrane protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 293
Score = 21.6 bits (44), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 123 LKPLMDRVQHSIQSKGLKPVKA 144
+KP +D++ SI+S P+KA
Sbjct: 141 VKPFLDKLGVSIKSVKSSPMKA 162
>gi|254781009|ref|YP_003065422.1| hypothetical protein CLIBASIA_04555 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 750
Score = 21.6 bits (44), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 2 YAHKYTKERIDNILASFSGGLSLSQSCKKHGVTVVSFH 39
+A+ Y R I++SF+ + S KK G +FH
Sbjct: 560 FANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFH 597
>gi|254780915|ref|YP_003065328.1| oligoendopeptidase F [Candidatus Liberibacter asiaticus str. psy62]
Length = 626
Score = 21.6 bits (44), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 11/43 (25%), Positives = 18/43 (41%)
Query: 9 ERIDNILASFSGGLSLSQSCKKHGVTVVSFHGWVKQDREDLEK 51
ERI ++ + LS +C T+ F+ + D EK
Sbjct: 95 ERICELIGRIASYAMLSYNCNLSSPTIRKFYTDINAKLADFEK 137
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.314 0.129 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102,784
Number of Sequences: 1233
Number of extensions: 3851
Number of successful extensions: 16
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 15
length of query: 162
length of database: 328,796
effective HSP length: 67
effective length of query: 95
effective length of database: 246,185
effective search space: 23387575
effective search space used: 23387575
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 35 (18.1 bits)