HHsearch alignment for GI: 254781218 and conserved domain: PRK05911

>PRK05911 RNA polymerase sigma factor sigma-28; Reviewed.
Probab=95.76  E-value=0.12  Score=29.95  Aligned_cols=125  Identities=15%  Similarity=0.175  Sum_probs=64.6

Q ss_pred             HHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHCCCHHHHHHHHCCCCCC---CHHHHHHH--HHHHCCCHHHHHCCCCCC
Q ss_conf             8999999999999999985--9988999998489999999887799888---99999999--998289999961453221
Q gi|254781218|r   25 IRQYWKDVGTRIKDIRKAN--NKTQKEMAIGANQLESAVNLFENGMCST---SIRYALYL--RNEYEISFDWIYDGEVID   97 (205)
Q Consensus        25 ~~~~~~~iG~rik~lR~~~--gltQ~elA~~~gis~~~is~~E~G~~~p---si~~l~~l--a~~~~vs~d~Ll~ge~~~   97 (205)
T Consensus       105 ~~~~~~ki~~~~~~l~~~~gr~pt~~eiA~~l~i~~~~v~~~~~~~~~~~~~sl~~~~~~~~d~~~~~~l~d~i~d~~~~  184 (257)
T PRK05911        105 VHQKANKLADAMDSLRQSLGKEPTDGELCEYLNISQQELSGWFSSARPALILSLNEEFPSQSDDEAGLALEERIADERAE  184 (257)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCHHHHCCCCCCC
T ss_conf             99999999999999999868899999999883979999999998535522230578888788887653077746798889


Q ss_pred             CCCCCCCCHHHH--HHHH---HH---HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCC
Q ss_conf             000023213455--4677---79---9999999972983899999977999999997414
Q gi|254781218|r   98 RRYEDVTNKKRL--DPYA---IG---ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQG  149 (205)
Q Consensus        98 ~~~~~~~~~~~~--d~~~---iG---~rLk~lR~~~glsq~elA~~lgis~~tis~~E~g  149 (205)
T Consensus       185 ~~~~~~~~~~~~~~L~~al~~L~erEr~Ii~lry~e~~Tl~EIg~~lgvS~eRVrQi~~~  244 (257)
T PRK05911        185 TGYDVVDKKEFSSILANAILALEEKERKVMALYYYEELVLKEIGKILGVSESRVSQIHSK  244 (257)
T ss_pred             CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf             989999999999999999865899999999987489878999998979889999999999