HHsearch alignment for GI: 254781218 and conserved domain: PRK05911
>PRK05911 RNA polymerase sigma factor sigma-28; Reviewed.
Probab=95.76 E-value=0.12 Score=29.95 Aligned_cols=125 Identities=15% Similarity=0.175 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHCCCHHHHHHHHCCCCCC---CHHHHHHH--HHHHCCCHHHHHCCCCCC
Q ss_conf 8999999999999999985--9988999998489999999887799888---99999999--998289999961453221
Q gi|254781218|r 25 IRQYWKDVGTRIKDIRKAN--NKTQKEMAIGANQLESAVNLFENGMCST---SIRYALYL--RNEYEISFDWIYDGEVID 97 (205)
Q Consensus 25 ~~~~~~~iG~rik~lR~~~--gltQ~elA~~~gis~~~is~~E~G~~~p---si~~l~~l--a~~~~vs~d~Ll~ge~~~ 97 (205)
T Consensus 105 ~~~~~~ki~~~~~~l~~~~gr~pt~~eiA~~l~i~~~~v~~~~~~~~~~~~~sl~~~~~~~~d~~~~~~l~d~i~d~~~~ 184 (257)
T PRK05911 105 VHQKANKLADAMDSLRQSLGKEPTDGELCEYLNISQQELSGWFSSARPALILSLNEEFPSQSDDEAGLALEERIADERAE 184 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCHHHHCCCCCCC
T ss_conf 99999999999999999868899999999883979999999998535522230578888788887653077746798889
Q ss_pred CCCCCCCCHHHH--HHHH---HH---HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCC
Q ss_conf 000023213455--4677---79---9999999972983899999977999999997414
Q gi|254781218|r 98 RRYEDVTNKKRL--DPYA---IG---ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQG 149 (205)
Q Consensus 98 ~~~~~~~~~~~~--d~~~---iG---~rLk~lR~~~glsq~elA~~lgis~~tis~~E~g 149 (205)
T Consensus 185 ~~~~~~~~~~~~~~L~~al~~L~erEr~Ii~lry~e~~Tl~EIg~~lgvS~eRVrQi~~~ 244 (257)
T PRK05911 185 TGYDVVDKKEFSSILANAILALEEKERKVMALYYYEELVLKEIGKILGVSESRVSQIHSK 244 (257)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 989999999999999999865899999999987489878999998979889999999999