HHsearch alignment for GI: 254781218 and conserved domain: PRK05932

>PRK05932 RNA polymerase factor sigma-54; Reviewed.

Probab=96.71  E-value=0.0025  Score=40.40  Aligned_cols=36  Identities=17%  Similarity=0.238  Sum_probs=24.5

Q ss_pred             CCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHH
Q ss_conf             983899999977999999997414889998999999
Q gi|254781218|r  126 GMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKI  161 (205)
Q Consensus       126 glsq~elA~~lgis~~tis~~E~g~~~Ps~~~l~kI  161 (205)
T Consensus       349 PL~lkdiA~~lglheSTVSRav~~Kyi~tp~G~~~l  384 (461)
T PRK05932        349 PLVLKDIAEALGMHESTISRATTNKYMATPRGIFEL  384 (461)
T ss_pred             CCCHHHHHHHCCCCHHHHHHHHHCCEECCCCCEEEH
T ss_conf             763999998739981258898716611489744669