HHsearch alignment for GI: 254781218 and conserved domain: PRK07500
>PRK07500 rpoH2 RNA polymerase factor sigma-32; Reviewed.
Probab=91.05 E-value=0.22 Score=28.33 Aligned_cols=113 Identities=16% Similarity=0.240 Sum_probs=53.0
Q ss_pred CHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCC---HHHHHCCCCCCC-CCCCC---CCHHHHHHHH---HH
Q ss_conf 88999998489999999887799888999999999982899---999614532210-00023---2134554677---79
Q gi|254781218|r 46 TQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS---FDWIYDGEVIDR-RYEDV---TNKKRLDPYA---IG 115 (205)
Q Consensus 46 tQ~elA~~~gis~~~is~~E~G~~~psi~~l~~la~~~~vs---~d~Ll~ge~~~~-~~~~~---~~~~~~d~~~---iG 115 (205)
T Consensus 150 ~~~eiA~~l~~~~~~v~~~~~~~~~~~~SL~~~~~~d~~~~~~~~d~l~d~~~~p~~~~e~~~~~~~~~~~L~~~l~~L~ 229 (289)
T PRK07500 150 IHREIATALGVSLSDVEMMDARLSGPDSSLNAPQSEEDEGRSERMDFLVDDSPLPDEIVESSIDGERRRQWLTQALQTLN 229 (289)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 39999988099999999999997379866668067877774015554046889838999999999999999999985499
Q ss_pred HHHHH---HH--HHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 99999---99--9729838999999779999999974148899989999999982
Q gi|254781218|r 116 ARLKS---IR--KDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 (205)
Q Consensus 116 ~rLk~---lR--~~~glsq~elA~~lgis~~tis~~E~g~~~Ps~~~l~kIa~~l 165 (205)
T Consensus 230 eREr~Ii~~r~~~~e~~TL~EIg~~lgvSreRVRQIe~-------kAL~KLR~~L 277 (289)
T PRK07500 230 ERELFIIRERRLREDGATLEALGEELGISKERVRQIEA-------RALEKLRRAL 277 (289)
T ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHH-------HHHHHHHHHH
T ss_conf 99999999976689985899999997979999999999-------9999999999