HHsearch alignment for GI: 254781218 and conserved domain: PRK12427
>PRK12427 flagellar biosynthesis sigma factor; Provisional.
Probab=95.43 E-value=0.21 Score=28.43 Aligned_cols=113 Identities=14% Similarity=0.111 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHHHHHC--CCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCC
Q ss_conf 999999999999999985--998899999848999999988779988899999999998289999961453221000023
Q gi|254781218|r 26 RQYWKDVGTRIKDIRKAN--NKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYEDV 103 (205)
Q Consensus 26 ~~~~~~iG~rik~lR~~~--gltQ~elA~~~gis~~~is~~E~G~~~psi~~l~~la~~~~vs~d~Ll~ge~~~~~~~~~ 103 (205)
T Consensus 95 r~~~~ki~~a~~~l~~~lgr~Pt~~EiA~~l~is~~~v~~~~~~~~~-----------~~~~sld~~~~~e~~~~~~~~~ 163 (229)
T PRK12427 95 RQKTHKTNEAIRQIAKRLGHEPNFEEISAELNLTADEYQEYLLLENA-----------GAMESLDEILALEAHNDILQSR 163 (229)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHCC-----------CCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99999999999999998588999999998919999999999998736-----------6875723344578876545676
Q ss_pred C-CHHHH----HHHH---HHHH---HHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCC
Q ss_conf 2-13455----4677---7999---99999972983899999977999999997414
Q gi|254781218|r 104 T-NKKRL----DPYA---IGAR---LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQG 149 (205)
Q Consensus 104 ~-~~~~~----d~~~---iG~r---Lk~lR~~~glsq~elA~~lgis~~tis~~E~g 149 (205)
T Consensus 164 ~~~e~~~~~~~L~~al~~L~erEr~Vi~l~y~e~ltlkEIa~~LgvS~~RVsQi~~k 220 (229)
T PRK12427 164 DLEENIIIEDNLKQAISQLDEREQMILHLYYQQELSMKEIAQVLDLTEARICQLNKK 220 (229)
T ss_pred CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 646789999999999971999999999998058998999999979889999999999