HHsearch alignment for GI: 254781218 and conserved domain: PRK12427

>PRK12427 flagellar biosynthesis sigma factor; Provisional.
Probab=95.43  E-value=0.21  Score=28.43  Aligned_cols=113  Identities=14%  Similarity=0.111  Sum_probs=62.5

Q ss_pred             HHHHHHHHHHHHHHHHHC--CCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCC
Q ss_conf             999999999999999985--998899999848999999988779988899999999998289999961453221000023
Q gi|254781218|r   26 RQYWKDVGTRIKDIRKAN--NKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRRYEDV  103 (205)
Q Consensus        26 ~~~~~~iG~rik~lR~~~--gltQ~elA~~~gis~~~is~~E~G~~~psi~~l~~la~~~~vs~d~Ll~ge~~~~~~~~~  103 (205)
T Consensus        95 r~~~~ki~~a~~~l~~~lgr~Pt~~EiA~~l~is~~~v~~~~~~~~~-----------~~~~sld~~~~~e~~~~~~~~~  163 (229)
T PRK12427         95 RQKTHKTNEAIRQIAKRLGHEPNFEEISAELNLTADEYQEYLLLENA-----------GAMESLDEILALEAHNDILQSR  163 (229)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHCC-----------CCCCCCCCCCCCCCCCCCCCCC
T ss_conf             99999999999999998588999999998919999999999998736-----------6875723344578876545676


Q ss_pred             C-CHHHH----HHHH---HHHH---HHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCC
Q ss_conf             2-13455----4677---7999---99999972983899999977999999997414
Q gi|254781218|r  104 T-NKKRL----DPYA---IGAR---LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQG  149 (205)
Q Consensus       104 ~-~~~~~----d~~~---iG~r---Lk~lR~~~glsq~elA~~lgis~~tis~~E~g  149 (205)
T Consensus       164 ~~~e~~~~~~~L~~al~~L~erEr~Vi~l~y~e~ltlkEIa~~LgvS~~RVsQi~~k  220 (229)
T PRK12427        164 DLEENIIIEDNLKQAISQLDEREQMILHLYYQQELSMKEIAQVLDLTEARICQLNKK  220 (229)
T ss_pred             CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf             646789999999999971999999999998058998999999979889999999999