HHsearch alignment for GI: 254781218 and conserved domain: PRK12469

>PRK12469 RNA polymerase factor sigma-54; Provisional.

Probab=96.14  E-value=0.0062  Score=37.95  Aligned_cols=40  Identities=18%  Similarity=0.223  Sum_probs=28.4

Q ss_pred             CCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf             2983899999977999999997414889998999999998
Q gi|254781218|r  125 KGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQV  164 (205)
Q Consensus       125 ~glsq~elA~~lgis~~tis~~E~g~~~Ps~~~l~kIa~~  164 (205)
T Consensus       362 kPL~lkdiA~~lglheSTVSRav~~Kyi~tp~Gi~~lk~F  401 (475)
T PRK12469        362 KPLVLRDVAEELGLHESTVSRATGNKYMATPRGTFEFKHF  401 (475)
T ss_pred             CCCCHHHHHHHHCCCCCHHHHHHCCCEECCCCCEEEHHHH
T ss_conf             6734999999819982037688627502379854669986