HHsearch alignment for GI: 254781218 and conserved domain: TIGR01321
>TIGR01321 TrpR trp operon repressor; InterPro: IPR013335 The Trp repressor (TrpR) binds to at least five operators in the Escherichia coli genome, repressing gene expression. The operators at which it binds vary considerably in DNA sequence and location within the promoter; when bound to the Trp operon it recognises the sequence 5'-ACTAGT-3' and acts to prevent the initiation of transcription. The TrpR controls the trpEDCBA (trpO) operon and the genes for trpR, aroH, mtr and aroL, which are involved in the biosynthesis and uptake of the amino acid tryptophan . The repressor binds to the operators only in the presence of L-tryptophan, thereby controlling the intracellular level of its effector; the complex also regulates Trp repressor biosynthesis by binding to its own regulatory region. TrpR acts as a dimer that is composed of identical 6-helical subunits, where four of the helices form the core of the protein and intertwine with the corresponding helices from the other subunit. This entry represents Trp repressors found in proteobacterial and chlamydial species.; GO: 0016564 transcription repressor activity, 0006355 regulation of transcription DNA-dependent.
Probab=94.46 E-value=0.071 Score=31.40 Aligned_cols=57 Identities=16% Similarity=0.253 Sum_probs=42.5
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHH
Q ss_conf 100015668999999999999999985--998899999848999999988779988899999
Q gi|254781218|r 17 YTLIITPEIRQYWKDVGTRIKDIRKAN--NKTQKEMAIGANQLESAVNLFENGMCSTSIRYA 76 (205)
Q Consensus 17 ~~~~~~~~~~~~~~~iG~rik~lR~~~--gltQ~elA~~~gis~~~is~~E~G~~~psi~~l 76 (205)
T Consensus 30 L~L~Lt~~---Er~dl~~R~~I~~~LL~~~~~QREi~~~lG~SiA~ITRGSn~Lk~~D~~~~ 88 (95)
T TIGR01321 30 LELLLTAD---EREDLGSRVRIVEELLEGEMSQREIAEKLGVSIATITRGSNALKALDPEFK 88 (95)
T ss_pred HHHHCCHH---HHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCHHHH
T ss_conf 99736863---799998799999999614897478888637616678787887516987889