HHsearch alignment for GI: 254781218 and conserved domain: TIGR02684
>TIGR02684 dnstrm_HI1420 probable addiction module antidote protein; InterPro: IPR014057 Members of this strictly bacterial protein family are small, at roughly 100 amino acids. The gene is almost invariably the downstream member of a gene pair. It is a predicted DNA-binding protein from a clade within the helix-turn-helix family IPR001387 from INTERPRO. These gene pairs, when found on the bacterial chromosome, are located often with prophage regions, but also both in integrated plasmid regions and in housekeeping gene regions. Analysis suggests that the gene pair may serve as an addiction module..
Probab=96.50 E-value=0.0042 Score=39.00 Aligned_cols=54 Identities=13% Similarity=0.129 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCH
Q ss_conf 99999999998599889999984899999998877998889999999999828999
Q gi|254781218|r 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISF 87 (205)
Q Consensus 32 iG~rik~lR~~~gltQ~elA~~~gis~~~is~~E~G~~~psi~~l~~la~~~~vs~ 87 (205)
T Consensus 35 ~~~ALG~iArArGMtq--lA~~tGlsREsLYkALs~~GnP~f~T~lkV~~ALG~~L 88 (91)
T TIGR02684 35 IAAALGVIARARGMTQ--LAKKTGLSRESLYKALSGGGNPTFDTILKVTKALGLKL 88 (91)
T ss_pred HHHHHHHHHHHCCHHH--HHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHCCCEE
T ss_conf 9999889986516578--99982876788788735688956688899998408602