HHsearch alignment for GI: 254781218 and conserved domain: cd04762

>cd04762 HTH_MerR-trunc Helix-Turn-Helix DNA binding domain of truncated MerR-like proteins. Proteins in this family mostly have a truncated helix-turn-helix (HTH) MerR-like domain. They lack a portion of the C-terminal region, called Wing 2 and the long dimerization helix that is typically present in MerR-like proteins. These truncated domains are found in response regulator receiver (REC) domain proteins (i.e., CheY), cytosine-C5 specific DNA methylases, IS607 transposase-like proteins, and RacA, a bacterial protein that anchors chromosomes to cell poles.
Probab=91.83  E-value=0.19  Score=28.81  Aligned_cols=28  Identities=25%  Similarity=0.405  Sum_probs=20.7

Q ss_pred             CCHHHHHHHHCCCHHHHHHHHCCCCCCC
Q ss_conf             8389999997799999999741488999
Q gi|254781218|r  127 MSQIEFGKLLGMPNSTLSNYEQGRTIPE  154 (205)
Q Consensus       127 lsq~elA~~lgis~~tis~~E~g~~~Ps  154 (205)
T Consensus         1 lt~~e~A~~lgVs~~TlrrW~~~G~i~~   28 (49)
T cd04762           1 LTTKEAAELLGVSPSTLRRWVKEGKLKA   28 (49)
T ss_pred             CCHHHHHHHHCCCHHHHHHHHHCCCCCE
T ss_conf             9889999997989999999998799431