HHsearch alignment for GI: 254781218 and conserved domain: cd04762
>cd04762 HTH_MerR-trunc Helix-Turn-Helix DNA binding domain of truncated MerR-like proteins. Proteins in this family mostly have a truncated helix-turn-helix (HTH) MerR-like domain. They lack a portion of the C-terminal region, called Wing 2 and the long dimerization helix that is typically present in MerR-like proteins. These truncated domains are found in response regulator receiver (REC) domain proteins (i.e., CheY), cytosine-C5 specific DNA methylases, IS607 transposase-like proteins, and RacA, a bacterial protein that anchors chromosomes to cell poles.
Probab=91.83 E-value=0.19 Score=28.81 Aligned_cols=28 Identities=25% Similarity=0.405 Sum_probs=20.7
Q ss_pred CCHHHHHHHHCCCHHHHHHHHCCCCCCC
Q ss_conf 8389999997799999999741488999
Q gi|254781218|r 127 MSQIEFGKLLGMPNSTLSNYEQGRTIPE 154 (205)
Q Consensus 127 lsq~elA~~lgis~~tis~~E~g~~~Ps 154 (205)
T Consensus 1 lt~~e~A~~lgVs~~TlrrW~~~G~i~~ 28 (49)
T cd04762 1 LTTKEAAELLGVSPSTLRRWVKEGKLKA 28 (49)
T ss_pred CCHHHHHHHHCCCHHHHHHHHHCCCCCE
T ss_conf 9889999997989999999998799431