HHsearch alignment for GI: 254781218 and conserved domain: pfam01381

>pfam01381 HTH_3 Helix-turn-helix. This large family of DNA binding helix-turn helix proteins includes Cro and CI.

Probab=99.36  E-value=1.7e-12  Score=97.06  Aligned_cols=55  Identities=24%  Similarity=0.290  Sum_probs=46.0

Q ss_pred             HHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHH
Q ss_conf             9999998599889999984899999998877998889999999999828999996
Q gi|254781218|r   36 IKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWI   90 (205)
Q Consensus        36 ik~lR~~~gltQ~elA~~~gis~~~is~~E~G~~~psi~~l~~la~~~~vs~d~L   90 (205)
T Consensus         1 ir~~R~~~g~tq~~lA~~~gis~~~is~~E~g~~~p~~~~l~~ia~~l~v~~~~l   55 (55)
T pfam01381         1 LKELREELGLSQEELAEKLGVSRSTISKIENGKREPSLETLKKLAEALGVSLDEL   55 (55)
T ss_pred             CHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHC
T ss_conf             9898978299899999998969999999987999999999999999978979879