HHsearch alignment for GI: 254781218 and conserved domain: pfam04814
>pfam04814 HNF-1_N Hepatocyte nuclear factor 1 (HNF-1), N terminus. This family consists of the N terminus of homeobox-containing transcription factor HNF-1. This region contains a dimerization sequence and an acidic region that may be involved in transcription activation. Mutations and the common Ala/Val 98 polymorphism in HNF-1 cause the type 3 form of maturity-onset diabetes of the young (MODY3).
Probab=94.92 E-value=0.11 Score=30.25 Aligned_cols=54 Identities=22% Similarity=0.260 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHH
Q ss_conf 554677799999999972983899999977999999997414889998999999
Q gi|254781218|r 108 RLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKI 161 (205)
Q Consensus 108 ~~d~~~iG~rLk~lR~~~glsq~elA~~lgis~~tis~~E~g~~~Ps~~~l~kI 161 (205)
T Consensus 110 ~~d~~~v~~~Ik~~m~~h~ipQ~~vv~~TGlnQS~lSq~LnkGt~Mk~~kr~al 163 (177)
T pfam04814 110 REDPWRVAKMIKSYMQQHNIPQREVVDATGLNQSHLSQHLNKGTPMKTQKRAAL 163 (177)
T ss_pred HHCHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 728499999999999876884667876106559999999966884078999999