HHsearch alignment for GI: 254781218 and conserved domain: pfam04814
>pfam04814 HNF-1_N Hepatocyte nuclear factor 1 (HNF-1), N terminus. This family consists of the N terminus of homeobox-containing transcription factor HNF-1. This region contains a dimerization sequence and an acidic region that may be involved in transcription activation. Mutations and the common Ala/Val 98 polymorphism in HNF-1 cause the type 3 form of maturity-onset diabetes of the young (MODY3).
Probab=92.59 E-value=0.7 Score=25.25 Aligned_cols=67 Identities=19% Similarity=0.173 Sum_probs=46.1
Q ss_pred HHHHHHHHHH-HHHHHCCCHHHHHHHH----HHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCC
Q ss_conf 7777666543-3310001566899999----99999999999859988999998489999999887799888
Q gi|254781218|r 5 PFLETSLKSL-QEYTLIITPEIRQYWK----DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCST 71 (205)
Q Consensus 5 ~~~~~~~~~~-~~~~~~~~~~~~~~~~----~iG~rik~lR~~~gltQ~elA~~~gis~~~is~~E~G~~~p 71 (205)
T Consensus 84 pPi~kele~l~~EEaa~qra~Ve~ll~~d~~~v~~~Ik~~m~~h~ipQ~~vv~~TGlnQS~lSq~LnkGt~M 155 (177)
T pfam04814 84 PPILKELERLSPEEAAHQRAEVDRLLREDPWRVAKMIKSYMQQHNIPQREVVDATGLNQSHLSQHLNKGTPM 155 (177)
T ss_pred CCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHCCCCC
T ss_conf 876603222582588888999999997284999999999998768846678761065599999999668840